| 2303585 | Bw86 | Body weight QTL 86 | 4 | | body mass (VT:0001259) | body weight (CMO:0000012) | 4 | 14678065 | 59678065 | Rat |
| 5685012 | Bmd87 | Bone mineral density QTL 87 | 5.1 | | tibia mineral mass (VT:1000283) | bone mineral content (CMO:0001554) | 4 | 56647776 | 78882945 | Rat |
| 1358352 | Srcrt3 | Stress Responsive Cort QTL 3 | 2.29 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 4 | 38465774 | 146803430 | Rat |
| 61445 | Strs3 | Sensitivity to stroke QTL 3 | 3 | | cerebrum integrity trait (VT:0010549) | post-insult time to onset of cerebrovascular lesion (CMO:0002343) | 4 | 40433388 | 85433388 | Rat |
| 6893678 | Bw108 | Body weight QTL 108 | 2.6 | 0.006 | body mass (VT:0001259) | body weight (CMO:0000012) | 4 | 43457976 | 88457976 | Rat |
| 5685009 | Bmd86 | Bone mineral density QTL 86 | 3.7 | | tibia mineral mass (VT:1000283) | bone mineral density (CMO:0001226) | 4 | 56647776 | 78882945 | Rat |
| 10755501 | Bp390 | Blood pressure QTL 390 | 2.5 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 4 | 26775591 | 168368347 | Rat |
| 1331807 | Rf31 | Renal function QTL 31 | 2.988 | | urine potassium amount (VT:0010539) | urine potassium level (CMO:0000128) | 4 | 39524264 | 74726312 | Rat |
| 8552782 | Vie1 | Viral induced encephalitis QTL 1 | 26.4 | | brain integrity trait (VT:0010579) | encephalitis incidence/prevalence measurement (CMO:0002361) | 4 | 34430484 | 82490359 | Rat |
| 634311 | Sach7 | Saccharin preference QTL 7 | | | taste sensitivity trait (VT:0001986) | saccharin intake volume to total fluid intake volume ratio (CMO:0001601) | 4 | 57114432 | 81266970 | Rat |
| 1358363 | Sradr3 | Stress Responsive Adrenal Weight QTL 3 | 6.19 | | adrenal gland mass (VT:0010420) | both adrenal glands wet weight (CMO:0000164) | 4 | 57486946 | 102486946 | Rat |
| 631261 | Tcas3 | Tongue tumor susceptibility QTL 3 | 6.88 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 4 | 10814170 | 91360527 | Rat |
| 2312567 | Glom19 | Glomerulus QTL 19 | 1.9 | 0.006 | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 4 | 45456990 | 146803430 | Rat |
| 61336 | Bp21 | Blood pressure QTL 21 | 4.6 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 4 | 57114705 | 78881294 | Rat |
| 2313401 | Anxrr27 | Anxiety related response QTL 27 | | | aggression-related behavior trait (VT:0015014) | tameness/aggressiveness composite score (CMO:0002136) | 4 | 17933508 | 62933508 | Rat |
| 8655961 | Kidm43 | Kidney mass QTL 43 | 18 | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 4 | 36303261 | 103194984 | Rat |
| 1354612 | Foco1 | Food consumption QTL 1 | 8.87 | | eating behavior trait (VT:0001431) | food intake rate (CMO:0000427) | 4 | 44463908 | 148090542 | Rat |
| 6909128 | Pancm4 | Pancreatic morphology QTL 4 | 11.35 | | pancreas mass (VT:0010144) | pancreas wet weight (CMO:0000626) | 4 | 26907285 | 75585128 | Rat |
| 2303168 | Bp330 | Blood pressure QTL 330 | 4.25 | 0.017 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 4 | 5214602 | 146446691 | Rat |
| 8552801 | Bw143 | Body weight QTL 143 | 7.3 | | body mass (VT:0001259) | change in body weight to body weight ratio (CMO:0002216) | 4 | 34430484 | 82490359 | Rat |
| 61475 | Aia2 | Adjuvant induced arthritis QTL 2 | 5.8 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 4 | 39505275 | 73892441 | Rat |
| 8694439 | Bw168 | Body weight QTL 168 | 9.57 | 0.001 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 4 | 40433414 | 85433414 | Rat |
| 61412 | Pia2 | Pristane induced arthritis QTL 2 | 3.9 | | joint integrity trait (VT:0010548) | post-insult time to onset of experimental arthritis (CMO:0001450) | 4 | 21333343 | 62278020 | Rat |
| 8655906 | Rf60 | Renal function QTL 60 | 3.8 | | blood creatinine amount (VT:0005328) | creatinine clearance (CMO:0000765) | 4 | 29494195 | 81006281 | Rat |
| 619616 | Bp79 | Blood pressure QTL 79 | | 0.0292 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 4 | 5214602 | 78882945 | Rat |
| 1576305 | Emca6 | Estrogen-induced mammary cancer QTL 6 | 5.8 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 4 | 44463720 | 155883716 | Rat |
| 7387227 | Uae40 | Urinary albumin excretion QTL 40 | 2.9 | 0.0052 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 4 | 17946999 | 62946999 | Rat |
| 6909122 | Insul22 | Insulin level QTL 22 | 4.63 | | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 4 | 26907285 | 75585128 | Rat |
| 8552809 | Vie5 | Viral induced encephalitis QTL 5 | 25.3 | | brain integrity trait (VT:0010579) | encephalitis incidence/prevalence measurement (CMO:0002361) | 4 | 34430484 | 82490359 | Rat |
| 1358203 | Stl19 | Serum triglyceride level QTL 19 | 2.8 | 0.002 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 4 | 5218294 | 65958103 | Rat |
| 1354660 | Salc1 | Saline consumption QTL 1 | 11.26 | | drinking behavior trait (VT:0001422) | saline drink intake rate (CMO:0001627) | 4 | 44463908 | 148090542 | Rat |
| 1641833 | Alc21 | Alcohol consumption QTL 21 | 8.6 | 0.0001 | drinking behavior trait (VT:0001422) | ethanol drink intake rate (CMO:0001407) | 4 | 56698790 | 126192555 | Rat |
| 1298082 | Stresp4 | Stress response QTL 4 | | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 4 | 50119848 | 146803430 | Rat |
| 631546 | Bp86 | Blood pressure QTL 86 | 3.2 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 4 | 57114432 | 91360801 | Rat |
| 1300139 | Hrtrt6 | Heart rate QTL 6 | 2.85 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 4 | 39524264 | 116179656 | Rat |
| 70200 | Alc18 | Alcohol consumption QTL 18 | 9.2 | | drinking behavior trait (VT:0001422) | ethanol intake volume to total fluid intake volume ratio (CMO:0001591) | 4 | 56647873 | 149491524 | Rat |
| 12798520 | Anxrr55 | Anxiety related response QTL 55 | 4.45 | 0.01 | locomotor behavior trait (VT:0001392) | number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715) | 4 | 32583980 | 114627242 | Rat |
| 4889969 | Bss96 | Bone structure and strength QTL 96 | 4.9 | | tibia size trait (VT:0100001) | tibia cortical bone volume (CMO:0001725) | 4 | 56647776 | 78882945 | Rat |
| 2316958 | Gluco58 | Glucose level QTL 58 | 10 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 4 | 11320076 | 180699135 | Rat |
| 4889972 | Bss97 | Bone structure and strength QTL 97 | 5.6 | | tibia size trait (VT:0100001) | tibia total bone volume (CMO:0001724) | 4 | 56647776 | 78882945 | Rat |
