Tsga13 (testis specific, 13) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Tsga13 (testis specific, 13) Rattus norvegicus
Analyze
Symbol: Tsga13
Name: testis specific, 13
RGD ID: 1584118
Description: Orthologous to human TSGA13 (testis specific 13); INTERACTS WITH bisphenol A; copper atom; copper(0).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC688848; similar to testis specific gene A13; testis specific gene A13; testis-specific gene 13 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8460,469,136 - 60,490,218 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl460,469,136 - 60,490,173 (-)EnsemblGRCr8
mRatBN7.2459,501,773 - 59,522,925 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl459,501,774 - 59,522,818 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx464,472,647 - 64,493,799 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0460,388,829 - 60,409,982 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0458,790,766 - 58,811,922 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0458,195,424 - 58,216,712 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl458,195,355 - 58,216,711 (-)Ensemblrn6Rnor6.0
Rnor_5.0457,951,386 - 57,972,674 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4457,958,452 - 57,979,580 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera454,595,592 - 54,616,612 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:24270810  


Genomics

Comparative Map Data
Tsga13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8460,469,136 - 60,490,218 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl460,469,136 - 60,490,173 (-)EnsemblGRCr8
mRatBN7.2459,501,773 - 59,522,925 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl459,501,774 - 59,522,818 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx464,472,647 - 64,493,799 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0460,388,829 - 60,409,982 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0458,790,766 - 58,811,922 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0458,195,424 - 58,216,712 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl458,195,355 - 58,216,711 (-)Ensemblrn6Rnor6.0
Rnor_5.0457,951,386 - 57,972,674 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4457,958,452 - 57,979,580 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera454,595,592 - 54,616,612 (-)NCBICelera
Cytogenetic Map4q22NCBI
TSGA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387130,668,643 - 130,687,432 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7130,668,643 - 130,687,432 (-)Ensemblhg38GRCh38
GRCh377130,353,483 - 130,372,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367130,004,026 - 130,021,946 (-)NCBIBuild 36Build 36hg18NCBI36
Build 347129,810,742 - 129,828,661NCBI
Celera7125,101,322 - 125,119,243 (-)NCBICelera
Cytogenetic Map7q32.2NCBI
HuRef7124,668,924 - 124,686,845 (-)NCBIHuRef
CHM1_17130,287,085 - 130,305,011 (-)NCBICHM1_1
T2T-CHM13v2.07131,982,945 - 132,001,718 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27129,689,988 - 129,707,909 (-)NCBI
Tsga13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,873,915 - 30,902,089 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl630,873,916 - 30,892,508 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38630,896,981 - 30,921,570 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,896,981 - 30,915,573 (-)Ensemblmm10GRCm38
MGSCv37630,846,981 - 30,865,573 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36630,827,142 - 30,845,736 (-)NCBIMGSCv36mm8
Celera630,881,677 - 30,900,346 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.54NCBI
Tsga13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541036,967,791 - 36,981,957 (+)Ensembl
ChiLan1.0NW_00495541036,964,398 - 36,982,042 (+)NCBIChiLan1.0ChiLan1.0
TSGA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26167,487,758 - 167,506,503 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1719,498,002 - 19,516,747 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07122,633,095 - 122,651,841 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17135,150,077 - 135,168,413 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7135,150,077 - 135,168,413 (-)EnsemblpanPan2panpan1.1
TSGA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha145,994,726 - 6,010,479 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0146,068,700 - 6,084,693 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl146,071,116 - 6,084,693 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1146,274,298 - 6,289,947 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0146,019,385 - 6,035,137 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0146,163,034 - 6,178,789 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tsga13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511824,500,961 - 24,515,224 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365794,635,862 - 4,647,726 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSGA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1818,191,271 - 18,209,259 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11818,190,893 - 18,209,077 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21819,211,636 - 19,229,518 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSGA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12199,300,488 - 99,318,269 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2199,300,581 - 99,316,261 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660424,072,208 - 4,089,633 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tsga13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247835,656,087 - 5,669,811 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247835,654,018 - 5,669,921 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Tsga13
130 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:77
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000015134
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41794699962946999Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45863587778886137Rat


Expression

RNA-SEQ Expression

appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
4 3 24 17 12 1 9 1 2 32 20 15 8 30 11 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000015134   ⟹   ENSRNOP00000015135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl460,469,136 - 60,490,173 (-)Ensembl
mRatBN7.2 Ensembl459,501,774 - 59,522,818 (-)Ensembl
Rnor_6.0 Ensembl458,195,355 - 58,216,711 (-)Ensembl
RefSeq Acc Id: NM_001107851   ⟹   NP_001101321
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8460,469,136 - 60,490,173 (-)NCBI
mRatBN7.2459,501,774 - 59,522,818 (-)NCBI
Rnor_6.0458,195,425 - 58,216,712 (-)NCBI
Rnor_5.0457,951,386 - 57,972,674 (-)NCBI
RGSC_v3.4457,958,452 - 57,979,580 (-)RGD
Celera454,595,592 - 54,616,612 (-)RGD
Sequence:
RefSeq Acc Id: XM_039108375   ⟹   XP_038964303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8460,469,137 - 60,490,217 (-)NCBI
mRatBN7.2459,501,773 - 59,522,863 (-)NCBI
RefSeq Acc Id: XM_039108376   ⟹   XP_038964304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8460,472,260 - 60,490,218 (-)NCBI
mRatBN7.2459,504,903 - 59,522,925 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101321 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964303 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964304 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15268 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015135
  ENSRNOP00000015135.5
RefSeq Acc Id: NP_001101321   ⟸   NM_001107851
- UniProtKB: D3ZMN0 (UniProtKB/TrEMBL),   A6IEI1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015135   ⟸   ENSRNOT00000015134
RefSeq Acc Id: XP_038964303   ⟸   XM_039108375
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038964304   ⟸   XM_039108376
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZMN0-F1-model_v2 AlphaFold D3ZMN0 1-270 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692942
Promoter ID:EPDNEW_R3467
Type:single initiation site
Name:Tsga13_1
Description:testis specific, 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0458,216,716 - 58,216,776EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584118 AgrOrtholog
BioCyc Gene G2FUF-45335 BioCyc
Ensembl Genes ENSRNOG00000011108 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015134 ENTREZGENE
  ENSRNOT00000015134.8 UniProtKB/TrEMBL
InterPro TSGA13 UniProtKB/TrEMBL
KEGG Report rno:688848 UniProtKB/TrEMBL
NCBI Gene 688848 ENTREZGENE
PANTHER PTHR37352 UniProtKB/TrEMBL
  TESTIS-SPECIFIC GENE 13 PROTEIN UniProtKB/TrEMBL
Pfam TSGA13 UniProtKB/TrEMBL
PhenoGen Tsga13 PhenoGen
RatGTEx ENSRNOG00000011108 RatGTEx
UniProt A6IEI1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZMN0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 Tsga13  testis specific, 13  Tsga13  testis specific gene A13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Tsga13  testis specific gene A13  LOC688848  similar to testis specific gene A13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC688848  similar to testis specific gene A13  LOC683348  similar to testis specific gene A13  Data merged from RGD:1588021 1643240 APPROVED
2006-11-19 LOC688848  similar to testis specific gene A13      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683348  similar to testis specific gene A13      Symbol and Name status set to provisional 70820 PROVISIONAL