Gsr (glutathione-disulfide reductase) - Rat Genome Database
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Gene: Gsr (glutathione-disulfide reductase) Rattus norvegicus
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Symbol: Gsr
Name: glutathione-disulfide reductase
RGD ID: 621747
Description: Exhibits several functions, including glutathione binding activity; glutathione-disulfide reductase activity; and nucleotide binding activity. Involved in several processes, including response to iron(III) ion; response to ischemia; and response to vitamin A. Localizes to cytosol and mitochondrion. Used to study cataract and transient cerebral ischemia. Biomarker of several diseases, including acute kidney failure (multiple); alcohol-induced mental disorder; hemorrhagic cystitis; myoglobinuria; and neurodegenerative disease (multiple). Human ortholog(s) of this gene implicated in macular degeneration. Orthologous to human GSR (glutathione-disulfide reductase); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; glutamic acid/glutamate metabolic pathway; glutathione metabolic pathway; INTERACTS WITH (+)-alpha-tocopherol; (+)-catechin; (+)-schisandrin B.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: glutathione reductase; glutathione reductase, mitochondrial; GR; GRase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21658,482,209 - 58,525,256 (-)NCBI
Rnor_6.0 Ensembl1662,197,617 - 62,241,361 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01662,197,617 - 62,239,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01661,859,601 - 61,901,971 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41662,255,562 - 62,298,458 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11662,255,636 - 62,298,530 (-)NCBI
Celera1656,518,556 - 56,560,956 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acute kidney failure  (IEP,ISO)
acute kidney tubular necrosis  (IEP,ISO)
Acute Lung Injury  (IEP)
acute lymphoblastic leukemia  (ISO)
acute myeloid leukemia  (ISO)
alcohol-induced mental disorder  (IEP)
Alzheimer's disease  (IEP,ISO)
amyotrophic lateral sclerosis  (ISO)
anemia  (ISO)
Arsenic Poisoning  (IEP)
beta thalassemia  (ISO)
Cadmium Poisoning  (IEP)
cataract  (IDA,ISO)
Chemical and Drug Induced Liver Injury  (IEP,ISO)
Cognitive Dysfunction  (ISO)
congenital hemolytic anemia  (ISO)
contact dermatitis  (ISO)
coronary artery disease  (ISO)
dementia  (ISO)
diabetes mellitus  (ISO)
diabetic angiopathy  (ISO)
diabetic cataract  (ISO)
Diabetic Nephropathies  (IEP,ISO)
Edema  (ISO)
end stage renal disease  (ISO)
Endotoxemia  (IEP)
Experimental Diabetes Mellitus  (IEP,ISO)
Heinz body anemia  (ISO)
hemolytic anemia  (ISO)
Hemolytic Anemia due to Glutathione Reductase Deficiency  (ISO)
hemorrhagic cystitis  (IEP)
Huntington's disease  (IEP)
Hypercholesterolemia  (IDA,IEP)
hypertension  (ISO)
hyperthyroidism  (IEP,ISO)
hypoglycemia  (ISO)
iron deficiency anemia  (ISO)
Kidney Reperfusion Injury  (IEP)
Knee Osteoarthritis  (ISO)
Liver Injury  (IEP)
Lung Injury  (IEP)
lymphoid leukemia  (ISO)
macular degeneration  (ISO)
myocardial infarction  (IEP)
Myocardial Reperfusion Injury  (IEP)
myoglobinuria  (IEP)
nephrolithiasis  (IEP)
neurodegenerative disease  (ISO)
non-alcoholic fatty liver disease  (IEP)
Organophosphate Poisoning  (IEP)
osteoporosis  (ISO)
Parkinsonism  (IEP,ISO)
peptic ulcer disease  (IEP)
polycythemia vera  (ISO)
Premature Aging  (ISO)
Protein Deficiency  (ISO)
renal cell carcinoma  (ISO)
Reperfusion Injury  (IEP)
senile cataract  (ISO)
sickle cell anemia  (ISO)
Sleep Deprivation  (IEP)
Testicular Injury  (IEP)
transient cerebral ischemia  (IDA)
Ureteral Calculi  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-alpha-tocopherol  (EXP)
(+)-catechin  (EXP)
(+)-schisandrin B  (EXP,ISO)
(+)-sesamin  (EXP)
(+)-trans-(S)-allethrin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(aminooxy)acetic acid  (EXP)
(E)-cinnamyl alcohol  (ISO)
(R)-lipoic acid  (EXP,ISO)
(RS)-coclaurine  (ISO)
(RS)-norcoclaurine  (ISO)
(S)-(-)-perillyl alcohol  (EXP,ISO)
(S)-coclaurine  (ISO)
(S)-naringenin  (EXP,ISO)
(S)-nicotine  (EXP)
1'-acetoxychavicol acetate  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
1,3-dichloropropan-2-ol  (EXP)
1-bromopropane  (EXP,ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4,6-trinitrotoluene  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,5-dihydroxybenzoic acid  (ISO)
2,6-dinitrotoluene  (EXP)
2-(chloromethyl)pyridine  (ISO)
2-acetamidofluorene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
2-tert-butylhydroquinone  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-dihydroxybenzaldehyde  (ISO)
3-[(4-anilinophenyl)diazenyl]benzene-1-sulfonic acid  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
3-nitropropanoic acid  (EXP)
3-phenylprop-2-enal  (ISO)
3H-1,2-dithiole-3-thione  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
4-amino-2,6-dinitrotoluene  (EXP)
4-hexylbenzene-1,3-diol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-methoxycinnamic acid  (EXP)
5-fluorouracil  (ISO)
7,12-dimethyltetraphene  (EXP,ISO)
9,11,13-octadecatrienoic acid  (EXP)
9-cis,11-trans-octadecadienoic acid  (EXP)
acetic acid  (EXP)
acrolein  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP)
alcohol  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
allopurinol  (EXP)
alloxan  (EXP)
allyl isothiocyanate  (EXP,ISO)
alpha,alpha-trehalose  (EXP)
alpha-hexachlorocyclohexane  (EXP)
alpha-hexylcinnamaldehyde  (ISO)
alpha-naphthoflavone  (ISO)
alternariol  (ISO)
aluminium atom  (EXP)
aluminium oxide  (EXP)
aluminium(0)  (EXP)
AM-251  (ISO)
aminoacetone  (EXP)
amlodipine  (EXP)
ammonium chloride  (EXP)
amoxicillin  (ISO)
amphibole asbestos  (ISO)
andrographolide  (EXP)
Anetholtrithion  (ISO)
anthocyanin  (EXP)
apigenin  (EXP,ISO)
arjunolic acid  (EXP,ISO)
Aroclor 1254  (EXP,ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
aspartame  (EXP)
astaxanthin  (EXP)
atrazine  (EXP,ISO)
azathioprine  (ISO)
Bandrowski's base  (ISO)
benfotiamine  (ISO)
benzo[a]pyrene  (ISO)
benzoic acid  (ISO)
benzopyran  (EXP)
Benzoyl peroxide  (ISO)
benzyl isothiocyanate  (EXP,ISO)
berberine  (EXP)
beta-carotene  (ISO)
beta-hexachlorocyclohexane  (EXP)
bezafibrate  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bis-4-nitrophenyl phosphate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
bortezomib  (ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
cadmium sulfide  (ISO)
caffeine  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
camphene  (EXP)
cannabidiol  (ISO)
capsaicin  (ISO)
captan  (ISO)
carbamate ester  (ISO)
carbon nanotube  (ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
carboplatin  (EXP)
carmustine  (EXP,ISO)
carnosic acid  (EXP,ISO)
cefaloridine  (EXP)
cefazolin  (ISO)
celastrol  (EXP)
chalcones  (EXP)
chitosan  (EXP)
chloric acid  (ISO)
chlorite  (ISO)
chloroacetaldehyde  (ISO)
chloroform  (ISO)
chlorogenic acid  (EXP)
chloroprene  (EXP,ISO)
chloroquine  (ISO)
chlorpromazine  (EXP)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
chromium atom  (EXP)
chromium(3+) trichloride  (EXP)
chromium(6+)  (EXP,ISO)
chrysin  (EXP)
cidofovir anhydrous  (ISO)
cinnamyl alcohol  (ISO)
cis-caffeic acid  (EXP,ISO)
cisplatin  (EXP,ISO)
citraconic acid  (EXP,ISO)
citral  (EXP)
clobetasol  (ISO)
clodronic acid  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (EXP,ISO)
cocaine  (EXP)
coenzyme Q10  (EXP)
coniferyl aldehyde  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (EXP)
crocidolite asbestos  (EXP)
CU-O LINKAGE  (EXP,ISO)
cumene hydroperoxide  (EXP)
curcumin  (EXP,ISO)
cycloartenol  (ISO)
cyclophosphamide  (EXP,ISO)
cyclosporin A  (EXP,ISO)
cyfluthrin  (EXP,ISO)
cyhalothrin  (EXP)
cypermethrin  (ISO)
cyproconazole  (EXP)
D-glucose  (EXP,ISO)
daidzein  (EXP)
dapsone  (ISO)
delta-hexachlorocyclohexane  (EXP)
desferrioxamine B  (EXP)
dexamethasone  (ISO)
diallyl disulfide  (EXP)
Diallyl sulfide  (EXP)
diarsenic trioxide  (EXP,ISO)
diazinon  (EXP)
dibutyl phthalate  (EXP,ISO)
dichlorine  (EXP)
dichloromethane  (ISO)
dichlorvos  (EXP)
diethyl malate  (ISO)
diethyl maleate  (ISO)
diethyl phthalate  (EXP,ISO)
diethylstilbestrol  (EXP,ISO)
digoxin  (EXP)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dimethoate  (EXP)
dimethyl fumarate  (EXP,ISO)
dioscin  (EXP,ISO)
diosmin  (EXP,ISO)
dioxygen  (EXP,ISO)
diprotium oxide  (ISO)
diquat  (ISO)
disodium selenite  (EXP,ISO)
disulfiram  (ISO)
diuron  (EXP)
dopamine  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
ebselen  (EXP)
elemental selenium  (EXP)
ellagic acid  (EXP)
emodin  (ISO)
endosulfan  (EXP)
endrin  (EXP)
enilconazole  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
eugenol  (ISO)
farnesol  (EXP)
fenitrothion  (EXP)
fenofibrate  (EXP)
fenvalerate  (EXP)
ferric oxide  (ISO)
ferulic acid  (EXP,ISO)
finasteride  (EXP)
fipronil  (EXP)
fisetin  (EXP)
flutamide  (EXP,ISO)
folic acid  (ISO)
folpet  (ISO)
fructose  (EXP)
furan  (EXP)
furans  (ISO)
furosemide  (EXP)
gallic acid  (EXP)
gallocatechin  (ISO)
gamma-hexachlorocyclohexane  (EXP,ISO)
genistein  (EXP,ISO)
gentamycin  (EXP,ISO)
geranial  (EXP)
geraniol  (EXP,ISO)
gliclazide  (EXP)
glucose  (EXP,ISO)
glutaraldehyde  (ISO)
glutathione  (EXP,ISO)
glutathione disulfide  (EXP,ISO)
glyburide  (EXP)
glyphosate  (EXP)
GW 4064  (ISO)
Heptachlor epoxide  (ISO)
hesperetin  (EXP,ISO)
hesperidin  (EXP)
Hexachloro-1,3-butadiene  (EXP)
hexane  (ISO)
homocysteine  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (ISO)
hydroxytyrosol  (ISO)
hypochlorous acid  (ISO)
iberin  (EXP)
idarubicin  (ISO)
ifosfamide  (ISO)
Illudin S  (ISO)
imidacloprid  (EXP)
indirubin-3'-monoxime  (ISO)
indole-3-acetic acid  (ISO)
indometacin  (EXP,ISO)
irofulven  (ISO)
iron atom  (EXP,ISO)
iron trichloride  (EXP)
iron(0)  (EXP,ISO)
iron(III) nitrilotriacetate  (EXP)
isocyanates  (ISO)
isoeugenol  (ISO)
isoprenaline  (EXP)
isotretinoin  (ISO)
juglone  (ISO)
kainic acid  (EXP)
ketoconazole  (EXP)
kojic acid  (ISO)
L-ascorbic acid  (EXP,ISO)
L-methionine  (ISO)
lead diacetate  (EXP,ISO)
lead nitrate  (ISO)
lead(0)  (EXP)
lead(2+)  (EXP)
leflunomide  (EXP)
letrozole  (EXP)
limonin  (ISO)
lipoic acid  (EXP,ISO)
lipopolysaccharide  (EXP,ISO)
liquiritigenin  (EXP)
liquiritin  (EXP)
lithium carbonate  (EXP)
lupeol  (EXP)
lutein  (ISO)
luzindole  (ISO)
LY294002  (ISO)
lycopene  (ISO)
magnesium sulfate  (EXP)
malathion  (EXP,ISO)
maneb  (EXP,ISO)
manganese atom  (EXP,ISO)
manganese(0)  (EXP,ISO)
manganese(II) chloride  (ISO)
mangiferin  (EXP,ISO)
melatonin  (EXP,ISO)
menadione  (ISO)
mercury atom  (EXP,ISO)
mercury dibromide  (ISO)
mercury dichloride  (EXP,ISO)
mercury(0)  (EXP,ISO)
metformin  (EXP,ISO)
methamphetamine  (EXP)
methapyrilene  (EXP)
methotrexate  (EXP)
methoxychlor  (EXP,ISO)
methyl salicylate  (ISO)
methylglyoxal  (EXP)
methylmercury chloride  (ISO)
microcystin  (EXP)
microcystin-LR  (EXP,ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
monocrotaline  (EXP)
monocrotophos  (EXP)
monoethyl phthalate  (ISO)
monosodium L-glutamate  (ISO)
motexafin gadolinium  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N,N-dimethylformamide  (EXP)
N,N-dimethylglycine  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
NAD zwitterion  (ISO)
NAD(+)  (ISO)
NADP zwitterion  (EXP,ISO)
NADP(+)  (EXP,ISO)
naphthalene  (ISO)
naringin  (EXP,ISO)
nefazodone  (EXP)
nickel atom  (EXP)
nickel sulfate  (EXP,ISO)
nicotinamide  (EXP)
nicotine  (EXP)
nimesulide  (EXP)
nitric oxide  (EXP)
nitrofurantoin  (EXP,ISO)
nitrogen dioxide  (EXP)
O-acetyl-L-carnitine  (ISO)
obeticholic acid  (ISO)
ochratoxin A  (ISO)
oleanolic acid  (EXP)
oridonin  (EXP)
orlistat  (EXP)
oxidopamine  (EXP,ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
parathion-methyl  (EXP)
patulin  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
perillyl alcohol  (EXP,ISO)
permethrin  (EXP,ISO)
peroxynitrous acid  (ISO)
phenanthrene  (ISO)
phenethyl caffeate  (EXP)
phenethyl isothiocyanate  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phytol  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
poly(I:C)  (EXP)
potassium bromate  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
prochloraz  (EXP)
propan-2-ol  (ISO)
propiconazole  (EXP,ISO)
pterostilbene  (ISO)
puerarin  (EXP,ISO)
Pyridostigmine bromide  (EXP)
pyridoxamine  (EXP)
pyrogallol  (ISO)
pyrovalerone  (ISO)
quartz  (ISO)
quercetin  (EXP,ISO)
quinalphos  (EXP)
rac-lactic acid  (ISO)
reactive oxygen species  (EXP,ISO)
resveratrol  (EXP,ISO)
riboflavin  (ISO)
rifampicin  (ISO)
rotenone  (EXP,ISO)
rutin  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
S-allylcysteine  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP,ISO)
salubrinal  (EXP)
sanguinarine  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
scopolamine  (ISO)
selenic acid  (ISO)
selenium atom  (EXP)
selenomethionine  (ISO)
serotonin  (ISO)
silibinin  (EXP)
silicon atom  (EXP)
silicon carbide  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenate  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium chlorate  (EXP)
sodium dichromate  (EXP,ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
sodium nitrate  (ISO)
sodium nitrite  (ISO)
spironolactone  (EXP)
streptozocin  (EXP)
sulfasalazine  (EXP)
sulforaphane  (EXP,ISO)
T-2 toxin  (ISO)
tacrine  (ISO)
tamoxifen  (ISO)
tangeretin  (EXP)
taurine  (EXP,ISO)
tert-butyl hydroperoxide  (EXP,ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
tetramethylpyrazine  (EXP)
tetrathiomolybdate(2-)  (ISO)
thallium  (EXP)
thapsigargin  (ISO)
theophylline  (EXP)
thioacetamide  (EXP)
thiostrepton  (ISO)
thymol  (ISO)
thymol sulfate(1-)  (ISO)
thymoquinone  (EXP)
thyroxine  (EXP)
titanium atom  (ISO)
titanium dioxide  (EXP,ISO)
trans-caffeic acid  (EXP,ISO)
trans-isoeugenol  (ISO)
triadimefon  (EXP)
tributyl phosphate  (EXP)
tributylstannane  (EXP)
triclosan  (ISO)
triphenyl phosphate  (EXP)
tris(2-butoxyethyl) phosphate  (EXP)
tris(picolinato)chromium  (EXP)
troglitazone  (EXP)
trovafloxacin  (EXP)
tungsten  (ISO)
tunicamycin  (ISO)
usnic acid  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vitamin E  (EXP,ISO)
water  (ISO)
yohimbine  (ISO)
zearalenone  (ISO)
zinc acetate  (EXP,ISO)
zinc atom  (EXP)
zinc dichloride  (EXP,ISO)
zinc oxide  (ISO)
zinc pyrithione  (ISO)
zinc sulfate  (EXP,ISO)
zinc(0)  (EXP)
zingerone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,IDA,IEA,ISO,TAS)
external side of plasma membrane  (ISO)
mitochondrion  (IBA,IDA)

Molecular Function

References

References - curated
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2. Abraham P, etal., Cell Biochem Funct. 2009 Jan;27(1):56-62. doi: 10.1002/cbf.1534.
3. Adem S and Ciftci M, Protein Expr Purif. 2012 Jan;81(1):1-4. doi: 10.1016/j.pep.2011.08.031. Epub 2011 Sep 10.
4. Aksenov MY, etal., J Mol Neurosci. 1998 Oct;11(2):151-64.
5. Ali N, etal., Mol Cell Biochem. 2014 Jan;385(1-2):215-23. doi: 10.1007/s11010-013-1830-4. Epub 2013 Oct 24.
6. Arieli Y, etal., Respir Physiol Neurobiol. 2014 Jun 15;197:29-35. doi: 10.1016/j.resp.2014.03.006. Epub 2014 Mar 24.
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Additional References at PubMed
PMID:204065   PMID:1235912   PMID:2139228   PMID:7323947   PMID:8417789   PMID:12516874   PMID:12967637   PMID:14651853   PMID:16189290   PMID:17382203   PMID:18614015   PMID:19056867  
PMID:23376485   PMID:23533145   PMID:24029230   PMID:26316444  


Genomics

Comparative Map Data
Gsr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21658,482,209 - 58,525,256 (-)NCBI
Rnor_6.0 Ensembl1662,197,617 - 62,241,361 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01662,197,617 - 62,239,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01661,859,601 - 61,901,971 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41662,255,562 - 62,298,458 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11662,255,636 - 62,298,530 (-)NCBI
Celera1656,518,556 - 56,560,956 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
GSR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl830,678,066 - 30,727,846 (-)EnsemblGRCh38hg38GRCh38
GRCh38830,678,066 - 30,727,846 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37830,535,583 - 30,585,363 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37830,535,578 - 30,585,486 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,655,977 - 30,704,985 (-)NCBINCBI36hg18NCBI36
Build 34830,655,976 - 30,704,985NCBI
Celera829,494,968 - 29,543,967 (-)NCBI
Cytogenetic Map8p12NCBI
HuRef829,080,197 - 29,130,251 (-)NCBIHuRef
CHM1_1830,737,741 - 30,787,638 (-)NCBICHM1_1
Gsr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,143,266 - 34,188,190 (+)NCBIGRCm39mm39
GRCm38833,653,238 - 33,698,162 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl833,652,523 - 33,698,163 (+)EnsemblGRCm38mm10GRCm38
MGSCv37834,763,710 - 34,808,634 (+)NCBIGRCm37mm9NCBIm37
MGSCv36835,119,173 - 35,164,097 (+)NCBImm8
MGSCv36832,569,577 - 32,614,657 (+)NCBImm8
Celera836,289,529 - 36,337,457 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.69NCBI
Gsr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554637,131,364 - 7,153,583 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554637,130,459 - 7,153,631 (-)NCBIChiLan1.0ChiLan1.0
GSR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1827,180,294 - 27,229,557 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl827,180,300 - 27,229,557 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0829,990,543 - 30,040,157 (-)NCBIMhudiblu_PPA_v0panPan3
GSR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1633,633,968 - 33,679,752 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11633,633,949 - 33,680,411 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Gsr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936792531,076 - 579,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,382,567 - 54,433,989 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11554,382,564 - 54,433,989 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21561,755,038 - 61,806,793 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GSR
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,778,713 - 28,851,907 (-)NCBI
Gsr
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478013,440,269 - 13,497,435 (+)NCBI

Position Markers
RH141457  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01662,197,428 - 62,197,610NCBIRnor6.0
Rnor_5.01661,859,412 - 61,859,594UniSTSRnor5.0
RGSC_v3.41662,254,812 - 62,254,994UniSTSRGSC3.4
Celera1656,518,367 - 56,518,549UniSTS
RH 3.4 Map16560.71UniSTS
Cytogenetic Map16q12.3UniSTS
RH144224  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01662,233,971 - 62,234,123NCBIRnor6.0
Rnor_5.01661,895,955 - 61,896,107UniSTSRnor5.0
RGSC_v3.41662,291,124 - 62,291,276UniSTSRGSC3.4
Celera1656,554,903 - 56,555,055UniSTS
RH 3.4 Map16541.6UniSTS
Cytogenetic Map16q12.3UniSTS
AI230105  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01662,197,611 - 62,197,801NCBIRnor6.0
Rnor_5.01661,859,595 - 61,859,785UniSTSRnor5.0
RGSC_v3.41662,254,995 - 62,255,185UniSTSRGSC3.4
Celera1656,518,550 - 56,518,740UniSTS
RH 3.4 Map16542.51UniSTS
Cytogenetic Map16q12.3UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)16109005486162972Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)16155018763210301Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16155018763210301Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)16155018763210301Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)16155018763210301Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16501380264012784Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161939818770590230Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)162075555680316424Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162484654169846541Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162751998072519980Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162834031573340315Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163530711063909364Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163900002184000021Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164151271086512710Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164151271086512710Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164655818890668790Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165781635790668790Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165781635790668790Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165781635790668790Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165928577589248943Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:438
Count of miRNA genes:232
Interacting mature miRNAs:269
Transcripts:ENSRNOT00000020252
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 34 11 8
Low 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000020252   ⟹   ENSRNOP00000020252
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1662,197,617 - 62,239,987 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090036   ⟹   ENSRNOP00000068989
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1662,198,178 - 62,241,361 (-)Ensembl
RefSeq Acc Id: NM_053906   ⟹   NP_446358
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,482,505 - 58,524,909 (-)NCBI
Rnor_6.01662,197,617 - 62,239,987 (-)NCBI
Rnor_5.01661,859,601 - 61,901,971 (-)NCBI
RGSC_v3.41662,255,562 - 62,298,458 (-)RGD
Celera1656,518,556 - 56,560,956 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005494529
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,482,209 - 58,525,256 (-)NCBI
Protein Sequences
Protein RefSeqs NP_446358 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB18132 (Get FASTA)   NCBI Sequence Viewer  
  EDM09143 (Get FASTA)   NCBI Sequence Viewer  
  P70619 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_446358   ⟸   NM_053906
- UniProtKB: F1LRE1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068989   ⟸   ENSRNOT00000090036
RefSeq Acc Id: ENSRNOP00000020252   ⟸   ENSRNOT00000020252
Protein Domains
Pyr_redox_2   Pyr_redox_dim

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2