Pia29 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Pia29 (Pristane induced arthritis QTL 29) Rattus norvegicus

Symbol: Pia29
Name: Pristane induced arthritis QTL 29
RGD ID: 2302057
Also known as: Rf3
Trait: blood autoantibody amount   (VT:0003725)    
Measurement Type: serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum   (CMO:0002111)    
LOD Score: 3.6
P Value: 0.001
Variance: Not Available
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01624,846,541 - 69,846,541RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01624,569,673 - 69,569,673RGDRnor5.0
RGSC_v3.41624,934,312 - 69,934,312RGDRGSC3.4
Cross Type: intercross
Strains Crossed: DA/ZtmRhd E3/ZtmRhd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition
pristane  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
DA/ZtmRhd  (IEA)
E3/ZtmRhd  (IEA)

References

References - curated
1. Wernhoff P, etal., Arthritis Rheum. 2003 Dec;48(12):3584-96.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2061Adrb3adrenoceptor beta 3166900354169006632Rat
71068Fgf20fibroblast growth factor 20165515274855159352Rat
67382Klkb1kallikrein B1165015112750175407Rat
3381Ppp2cbprotein phosphatase 2 catalytic subunit beta166227327662294767Rat
69291Hmgb2high mobility group box 2163607761536080191Rat
2015Acsl1acyl-CoA synthetase long-chain family member 1164893745649003898Rat
2948Aadataminoadipate aminotransferase163283200132868680Rat
2394Cpecarboxypeptidase E162690671627014811Rat
621219Clcn3chloride voltage-gated channel 3163244882132520649Rat
620362Galnt7polypeptide N-acetylgalactosaminyltransferase 7163593505936062734Rat
621229Glra3glycine receptor, alpha 3163767695937908221Rat
727826Cbr4carbonyl reductase 4163194432831972553Rat
620281Msmo1methylsterol monooxygenase 1162685944126875880Rat
621341Nrg1neuregulin 1166296957364065063Rat
620901Pcm1pericentriolar material 1165404072154137675Rat
628681Zdhhc2zinc finger DHHC-type palmitoyltransferase 2165493254655002322Rat
621747Gsrglutathione-disulfide reductase166219761762239987Rat
631381Mtus1microtubule associated scaffold protein 1165424089254386131Rat
620259Eif4ebp1eukaryotic translation initiation factor 4E binding protein 1166895486068968248Rat
621600Ppp1r3bprotein phosphatase 1, regulatory subunit 3B166041519260427498Rat
621254Fat1FAT atypical cadherin 1165037215050501716Rat
620427Pdlim3PDZ and LIM domain 3164954314049574362Rat
708530Cyp4v3cytochrome P450, family 4, subfamily v, polypeptide 3165011180350136741Rat
621207Hand2heart and neural crest derivatives expressed 2163637148936373551Rat
68387Slc7a2solute carrier family 7 member 2165445940954513349Rat
619800Vegfcvascular endothelial growth factor C164044037140555178Rat
1304922Irf2interferon regulatory factor 2164858235448732129Rat
1304810Trmt9btRNA methyltransferase 9B (putative)165931614559368559Rat
1307052Adam34la disintegrin and metalloprotease domain 34-like165172800351733028Rat
621544Chrnb3cholinergic receptor nicotinic beta 3 subunit166887644268913628Rat
735154Sh3rf1SH3 domain containing ring finger 1163206242532227526Rat
735171Tlr3toll-like receptor 3165001646650031011Rat
69281Chrna6cholinergic receptor nicotinic alpha 6 subunit166886001868866718Rat
1303065Spata4spermatogenesis associated 4163996116039970530Rat
620061Sorbs2sorbin and SH3 domain containing 2164962620549820223Rat
1303011Sarafstore-operated calcium entry-associated regulatory factor166173518961753438Rat
620625Dusp4dual specificity phosphatase 4166108076761090973Rat
620352Slc25a4solute carrier family 25 member 4164926690349270698Rat
620797Mtnr1amelatonin receptor 1A165033935850358809Rat
620087Hpgd15-hydroxyprostaglandin dehydrogenase163745713437495758Rat
631368Gpm6aglycoprotein m6a163936769739719292Rat
1303318Tusc3tumor suppressor candidate 3165624812556396491Rat
68377Scrg1stimulator of chondrogenesis 1163612753636161041Rat
1305148Marchf1membrane associated ring-CH-type finger 1162499870925856327Rat
1306023Ubxn8UBX domain protein 8166225124362272838Rat
1306388Klhl2kelch-like family member 2162675524626852134Rat
1305088Purgpurine-rich element binding protein G166242793362483295Rat
1306608Mtmr7myotubularin related protein 7165476521454856255Rat
1307347Ing2inhibitor of growth family, member 2164771475647725836Rat
1306120Tll1tolloid-like 1162739946727597240Rat
1307325Cfap97cilia and flagella associated protein 97164928007649329029Rat
620169Fgl1fibrinogen-like 1165415308654188120Rat
1307168Leprotl1leptin receptor overlapping transcript-like 1166175894161769655Rat
1307596Fbxo8F-box protein 8163713156637177033Rat
1304767Tktl2transketolase-like 2162494419724951478Rat
1307172Got1l1glutamic-oxaloacetic transaminase 1-like 1166902275669035507Rat
1308517Cep44centrosomal protein 44163717737937199043Rat
1305896Lrp2bpLrp2 binding protein164943737349463100Rat
1306641Tenm3teneurin transmembrane protein 3164642267646929023Rat
1307788Sgczsarcoglycan zeta165713643358206350Rat
1305337Triml1tripartite motif family-like 1165216942652177548Rat
1310414Tti2TELO2 interacting protein 2166473734264745207Rat
1305222Tma16translation machinery associated 16 homolog162497842924997286Rat
1311645Enpp6ectonucleotide pyrophosphatase/phosphodiesterase 6164831550048437258Rat
1308028Pdgfrlplatelet-derived growth factor receptor-like165438626954450426Rat
1333135Olr1649-psolfactory receptor pseudogene 1649163098635730986593Rat
1308378Eri1exoribonuclease 1166030714860327237Rat
1311297Mak16MAK16 homolog166472925464737807Rat
1311274Mfap3lmicrofibril associated protein 3 like163273405932777091Rat
1559427Wwc2WW and C2 domain containing 2164736876847533816Rat
621568Asah1N-acylsphingosine amidohydrolase 1165399860454030006Rat
1560302RGD1560302similar to RIKEN cDNA 1700018B24164777431247774930Rat
1561098Rps27a-ps14ribosomal protein S27a, pseudogene 14163520042835200956Rat
1359390Palldl1palladin-like 1163134914031390340Rat
1311747Hpf1histone PARylation factor 1163252412832540233Rat
1559501Adam26aa disintegrin and metallopeptidase domain 26A165179206051828519Rat
1359164Fut10fucosyltransferase 10166462324664716248Rat
1359166LOC364556similar to Ab1-351162811716428117920Rat
1309001Cldn23claudin 23165998860359990327Rat
1309010Erlin2ER lipid raft associated 2166917900569195452Rat
1309646Agaaspartylglucosaminidase164122222541234169Rat
1305672Spock3SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3162837206728716762Rat
1309364F11coagulation factor XI165017945850201644Rat
1307549Dctn6dynactin subunit 6166179554461814734Rat
1310150Snx25sorting nexin 25164932895849432415Rat
1309245Unc5dunc-5 netrin receptor D166704780367601002Rat
1310090Dusp26dual specificity phosphatase 26166479878264806459Rat
1309375Nek1NIMA-related kinase 1163232101032439421Rat
1310562Neil3nei-like DNA glycosylase 3164107944441138505Rat
1305302Cdkn2aipCDKN2A interacting protein164766486447670935Rat
1305313Cnot7CCR4-NOT transcription complex, subunit 7165489945254918616Rat
1309341Tmem192transmembrane protein 192162662052526642537Rat
1308784Tnkstankyrase166092509361067192Rat
1310134Gtf2e2general transcription factor IIE subunit 2166211384662164339Rat
1308962Plpbppyridoxal phosphate binding protein166916465469176245Rat
1308812Mfhas1malignant fibrous histiocytoma amplified sequence 1166012045760208550Rat
1308817Brf2BRF2, RNA polymerase III transcription initiation factor subunit166908995569094678Rat
1305271Cldn22claudin 22164753434947535358Rat
1309765Trappc11trafficking protein particle complex subunit 11164787499347920822Rat
1359671DctddCMP deaminase164717714447222850Rat
1559626Atp5hl1ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d-like 1165181649551817031Rat
1561067RbpmsRNA binding protein, mRNA processing factor166195456962109998Rat
1334202Olr1772-psolfactory receptor pseudogene 1772163047409330474383Rat
1564788WrnWRN RecQ like helicase166248377362619018Rat
1560956Anxa10annexin A10162967469929741521Rat
1563097RGD1563097similar to ribosomal protein S15a166262827762628723Rat
1560014Ddx60DEXD/H-box helicase 60162981614429936220Rat
1564316Msr1macrophage scavenger receptor 1165681771456900025Rat
1562965Rab11fip1RAB11 family interacting protein 1166904873969079332Rat
1563411Micu3mitochondrial calcium uptake family, member 3165504305155133080Rat
1560016Vps37aVPS37A subunit of ESCRT-I165486081154899410Rat
1563604RGD1563604similar to Bcl-2 inhibitor of transcription165105935951059908Rat
1564073Helthelt bHLH transcription factor164918556049187293Rat
1565715Ankrd37ankyrin repeat domain 37164946301649465905Rat
1560512RGD1560512similar to 40S ribosomal protein S25166231206762312492Rat
1359470PotegPOTE ankyrin domain family, member G166873881368832907Rat
1562800LOC302192similar to RIKEN cDNA 1700001E04166636341466387912Rat
1564308RGD1564308similar to LOC495042 protein164948502249509756Rat
1564132Rwdd4RWD domain containing 4164785652247874921Rat
1560648RGD1560648similar to DJ-1 protein164250892642509284Rat
1311266Tex15testis expressed 15, meiosis and synapsis associated166231328462373288Rat
1562119Primpolprimase and DNA directed polymerase164886338548900409Rat
1309066Adam24a disintegrin and metallopeptidase domain 24165462578954631824Rat
1564773Galntl6polypeptide N-acetylgalactosaminyltransferase-like 6163455105235803840Rat
1562043Cldn24claudin 24164753681447537476Rat
708477Stox2storkhead box 2164799455548233588Rat
1311793Prag1PEAK1 related kinase activating pseudokinase 1165966679459730681Rat
1311161Ufsp2UFM1-specific peptidase 2164946595849484975Rat
1586153Fam149afamily with sequence similarity 149, member A165004981650105962Rat
1585878LOC680911hypothetical protein LOC680911164160826541612491Rat
68416Dlc1DLC1 Rho GTPase activating protein165877648959247752Rat
1582869LOC690241similar to transcription elongation factor B (SIII), polypeptide 2165441555054415898Rat
1587352LOC306476similar to 60S ribosomal protein L29 (P23)165130967951310165Rat
1587353LOC306456similar to CG17726-PA164775654547757913Rat
1587354LOC306444similar to Protein kinase C-binding protein 1 (Rack7) (Cutaneous T-cell lymphoma associated antigen se14-3) (CTCL tumor antigen se14-3) (Zinc finger MYND domain containing protein 8)164213329142135023Rat
1585243LOC688765hypothetical protein LOC688765165872977558731673Rat
1585256LOC688752similar to voltage-dependent anion channel 1165857656058593527Rat
1584662LOC681082similar to eukaryotic translation initiation factor 3, subunit 1 alpha164541225845413287Rat
1585819LOC680970similar to histone deacetylase 1164305557843095363Rat
2275Casp3caspase 3164884501148863249Rat
1565973Asb5ankyrin repeat and SOCS box-containing 5163998523340050663Rat
1561238Rnf122ring finger protein 122166476687864787308Rat
1562020RGD1562020similar to 60S ribosomal protein L13a (Transplantation antigen P198)166892681268927495Rat
1562566Cenpucentromere protein U164889803248921248Rat
1566335Mboat4membrane bound O-acyltransferase domain containing 4166178269961795414Rat
1565534RGD1565534similar to RING finger protein 33162661521926618601Rat
1562638RGD1562638similar to MAP/microtubule affinity-regulating kinase 3166847851368597196Rat
1562583Lonrf1LON peptidase N-terminal domain and ring finger 1165956454859594252Rat
1582825LOC690289similar to mitochondrial ribosomal protein S25162613586026136372Rat
1565382Triml2tripartite motif family-like 2165211697552127591Rat
1583491LOC682400similar to glyceraldehyde-3-phosphate dehydrogenase164960463649605707Rat
1564538Ccdc110coiled-coil domain containing 110164950988549522094Rat
1565245RGD1565245similar to Histone H2B 291B165951886259524529Rat
1565331RGD1565331similar to reticulocalbin163904355239044840Rat
1588595LOC290779similar to zinc finger protein 148 (pHZ-52)165653078356537885Rat
1588596LOC290761similar to Fructose-bisphosphate aldolase A (Muscle-type aldolase) (Aldolase 1)165069282650694269Rat
1588597LOC290721similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)163655341536554489Rat
1592970LOC680359similar to 40S ribosomal protein S20166670201766702331Rat
1592389LOC688171similar to vomeronasal 2, receptor, 9166497922164984761Rat
1587863Snrpc-ps1small nuclear ribonucleoprotein polypeptide C, pseudogene 1165209561352098616Rat
1590843Wdr17WD repeat domain 17163981028539938953Rat
1590850LOC364619similar to 40S ribosomal protein S7 (S8)166808201868082612Rat
1590851LOC364616similar to heat shock protein HSP 90-beta166451398964516013Rat
1590852LOC364609similar to 40S ribosomal protein S17166185196261852404Rat
1590853LOC364604hypothetical pseudogene on chromosome 16165788109757882250Rat
1590854LOC364602similar to 40S ribosomal protein S3165583440455835117Rat
1589654LOC498647similar to poly(rC)-binding protein 2 isoform a166839041068391704Rat
1589656LOC498634similar to tubulin, alpha 1165014516950147532Rat
1589657LOC498628similar to Pinin163960866239613413Rat
1589057LOC685829similar to calcium binding and coiled-coil domain 2165178638351788350Rat
1589040Adam34a disintegrin and metallopeptidase domain 34165175079051752939Rat
1586989Pabpc1-ps1poly(A) binding protein, cytoplasmic 1, pseudogene 1164160555841608129Rat
1589889Gapdh-ps2glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2162577357325774863Rat
1585495Frg1FSHD region gene 1165395785853978865Rat
1584050LOC690117similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)163750001737502245Rat
1586634LOC686062similar to family with sequence similarity 51, member A1 homolog165366262953663332Rat
1588249Zfp703zinc finger protein 703166923785769242028Rat
1588184Spcs3signal peptidase complex subunit 3164005086240056296Rat
1589009LOC685877similar to endothelial differentiation-related factor 1 isoform alpha165167907251679505Rat
1592034LOC364592similar to ribosomal protein L4164883829648839540Rat
1592037LOC364562similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (P31) (p1B15)163270898032709514Rat
1592038LOC364561similar to PIN1-like protein163265716932657769Rat
1597370LOC690318similar to Glycine cleavage system H protein, mitochondrial precursor162632310226335708Rat
1595671LOC502078similar to myc induced nuclear antigen163734675237348606Rat
1596975Grlf1-ps1glucocorticoid receptor DNA binding factor 1, pseudogene 1162723287227236491Rat
1591754LOC680446similar to ABT1-associated protein163765025237651838Rat
1593988LOC682860similar to Bromodomain adjacent to zinc finger domain 2A (Transcription termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5)165215497352161693Rat
1592040LOC364559similar to 60S ribosomal protein L7a163225012532261377Rat
1597163LOC301772similar to Y-linked testis-specific protein163026154030262255Rat
1596879LOC680008similar to ATP synthase mitochondrial F1 complex assembly factor 2166284715662848000Rat
1595501Sap30Sin3A associated protein 30163611594236121310Rat
1594133Pebp1-ps1phosphatidylethanolamine binding protein 1, pseudogene 1163666409336665024Rat
1596760LOC681330similar to ribosomal protein S15a164728323947283685Rat
1592044LOC364546similar to Tubulin alpha-2 chain (Alpha-tubulin 2)162648055226482136Rat
1596691LOC681399similar to Proteasome subunit alpha type 5 (Proteasome zeta chain) (Macropain zeta chain) (Multicatalytic endopeptidase complex zeta chain)164757245447573257Rat
1595880Vom2r-ps142vomeronasal 2 receptor, pseudogene 142166492025864925312Rat
1597769LOC685113similar to prothymosin, alpha (gene sequence 28)164844624548451474Rat
1597747LOC685135similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9)164851345348513707Rat
2319133Zfp42zinc finger protein 42165201659052026346Rat
2318755LOC100362128reticulocalbin 1-like166624463666245475Rat
2318769LOC100362114hypothetical LOC100362114163879414238796233Rat
2319506LOC100361768E74-like factor 2 (ets domain transcription factor)-like163814876938156195Rat
2320355LOC100361310hypothetical LOC100361310164865599948657829Rat
2320536LOC10036122760S ribosomal protein L18-like163289093432917582Rat
2322262LOC100360391hypothetical LOC100360391166765935267659798Rat
2321505LOC100360753ribosomal protein S3a-like162951180329637917Rat
2322323LOC100360330hypothetical LOC100360330165895650659049771Rat
2322323LOC100360330hypothetical LOC100360330165877646458792456Rat
2322336LOC100360316hypothetical protein LOC100360316163394259233943784Rat
2320851LOC100364509ribosomal protein S9-like166187386961874544Rat
2320869LOC100361091Stam binding protein-like163262057632621231Rat
2322491LOC100360260chromobox homolog 3-like163250887132511270Rat
2322528LOC100360222hypothetical LOC100360222165770270357709089Rat
2322545Palldpalladin, cytoskeletal associated protein163186571231948168Rat
2321133LOC100360926sorcin-like165948035059480957Rat
2322723LOC100360126MAD homolog 2165645541556456168Rat
2323365Adgra2adhesion G protein-coupled receptor A2166909458769133015Rat
2320482LOC100361281solute carrier family 25, member 13-like163291864533074585Rat
2324264Trim60tripartite motif containing 60162660294126604692Rat
2324291LOC100362667RIKEN cDNA 2310037I24-like164074036940741592Rat
2325533Mir383microRNA 383165751967557519748Rat
6486823LOC100912522ubiquitin-conjugating enzyme E2 variant 1-like164869588648697718Rat
6485990LOC100912602uncharacterized LOC100912602164916317649169308Rat
6493344LOC100911312uncharacterized LOC100911312166892977768937289Rat
6487726LOC100912321myeloid-associated differentiation marker-like163479565734797769Rat
6494469LOC100911229sperm motility kinase-like166863005968635525Rat
6490582LOC100911829guanine nucleotide exchange factor MSS4-like165892194458922545Rat
6493806LOC100911264uncharacterized LOC100911264166865919468697850Rat
6485857LOC100912658probable ATP-dependent RNA helicase DDX60-like162980473829814159Rat
6495500LOC100910955Y-linked testis-specific protein 1-like163025552130256223Rat
6495615LOC100910977disintegrin and metalloproteinase domain-containing protein 25-like165453024854535481Rat
6499367LOC100910324uncharacterized LOC100910324163931343739322032Rat
6496301LOC100910853transcription elongation factor B polypeptide 2-like165441945854419866Rat
6499950Adam21ADAM metallopeptidase domain 21163913856139148460Rat
6499975LOC100910088prolow-density lipoprotein receptor-related protein 1-like165999709060046457Rat
6500448LOC100910052elongation factor Tu, mitochondrial-like166001201960014274Rat
6498266LOC100910468tripartite motif-containing protein 60-like162659337026594763Rat
6498547Smim31small integral membrane protein 31162648341126519137Rat
6501537Smim18small integral membrane protein 18166214575662154278Rat
7519070LOC102553540uncharacterized LOC102553540166038618560400518Rat
7526295LOC102555533disintegrin and metalloproteinase domain-containing protein 25-like165160096151601753Rat
7540575LOC102551022uncharacterized LOC102551022164730730047316220Rat
7540925LOC102547380uncharacterized LOC102547380165392077053933684Rat
7507107LOC102549910uncharacterized LOC102549910164065397840683123Rat
7542501LOC102548526uncharacterized LOC102548526163592214335934896Rat
7499273LOC102555385uncharacterized LOC102555385163117256831187380Rat
7530546LOC102554462uncharacterized LOC102554462165114158951176983Rat
7533622LOC102551570uncharacterized LOC102551570164782619647840989Rat
7533657LOC102555353uncharacterized LOC102555353164799453447996971Rat
7534516LOC10255555840S ribosomal protein S6-like163882517438826207Rat
7538198LOC102553008uncharacterized LOC102553008164908369649109565Rat
7539606LOC102555039MLV-related proviral Env polyprotein-like163610400636105868Rat
7662509LOC102548313uncharacterized LOC102548313166903029369035520Rat
7631653LOC102548721uncharacterized LOC102548721166966119369663816Rat
7632599LOC10254872040S ribosomal protein S27-like164646899746469341Rat
7633194LOC102551895uncharacterized LOC102551895164847435848479137Rat
7634621LOC102550563high mobility group protein B1-like164118649841203835Rat
7621982LOC102553302uncharacterized LOC102553302164906277949068793Rat
7659612LOC102554887uncharacterized LOC102554887166244557862452435Rat
7660333LOC102548057calponin-3-like163389022333891333Rat
7630189LOC102552257ubiquitin-conjugating enzyme E2 E3-like165937383259375431Rat
7569603LOC102548002uncharacterized LOC102548002163343978333443332Rat
7588928LOC102547442uncharacterized LOC102547442163231866732340885Rat
7589768LOC102552468uncharacterized LOC102552468165992483459946011Rat
7617995LOC102552115uncharacterized LOC102552115165901914159021783Rat
7594186LOC102551260uncharacterized LOC102551260164760568747607998Rat
7619887LOC102552290uncharacterized LOC102552290164859147548609215Rat
7620441LOC102554053uncharacterized LOC102554053166135851361377284Rat
7543674LOC102556287uncharacterized LOC102556287166517812265255583Rat
7557665LOC102552063BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like162518655225188245Rat
7578262LOC102555473uncharacterized LOC102555473166408492664085559Rat
7561344LOC102547443uncharacterized LOC102547443165397540953998388Rat
7580994LOC102551690uncharacterized LOC102551690164794645047954533Rat
7584717LOC102553697uncharacterized LOC102553697166076618360788407Rat
7607022LOC102551217glyceraldehyde-3-phosphate dehydrogenase-like163348077833481427Rat
7553804LOC102553369uncharacterized LOC102553369166035620560368099Rat
7688308LOC102552351uncharacterized LOC102552351164648303146494888Rat
7688695LOC102552563uncharacterized LOC102552563164693493146938966Rat
7732122LOC102554104uncharacterized LOC102554104166160903261611700Rat
7740585LOC10255286260S ribosomal protein L24-like162618414226184721Rat
7716143LOC102554682uncharacterized LOC102554682162915052229153811Rat
7718883LOC102552421uncharacterized LOC102552421164622478046255489Rat
7701467LOC102548719uncharacterized LOC102548719163619933836201741Rat
7746793LOC102555712uncharacterized LOC102555712166478923664791419Rat
7675343LOC102547664uncharacterized LOC102547664163265879832665673Rat
7682348LOC10255598840S ribosomal protein S8-like165216179052163045Rat
9134656LOC103693941uncharacterized LOC103693941163467202734680370Rat
9212565LOC103693926uncharacterized LOC103693926162731772427333018Rat
9177338LOC103693951glutathione S-transferase P pseudogene164065654340658445Rat
9142800LOC103693981uncharacterized LOC103693981166702589467037116Rat
9076880LOC103693949early nodulin-75-like163335781933358385Rat
9078042LOC103693944heat shock cognate 71 kDa protein-like163546891235471822Rat
9182273LOC103693962uncharacterized LOC103693962165138416651401579Rat
9149733LOC103690186uncharacterized LOC103690186163901969539020570Rat
9151001LOC103693927uncharacterized LOC103693927162988417929884943Rat
9153014LOC103693953zinc finger protein 239-like164496864944971470Rat
9155287LOC103693988uncharacterized LOC103693988166949252069507067Rat
9159203LOC103693939uncharacterized LOC103693939163291802832925699Rat
9159214LOC10369397860S ribosomal protein L9-like166113035761131372Rat
9113796LOC103693929uncharacterized LOC103693929162996031529962853Rat
9114442LOC10369424260S ribosomal protein L7 pseudogene163645016036451034Rat
9197513LOC103693982uncharacterized LOC103693982166710203467105674Rat
9164473LOC103693960coiled-coil domain-containing protein 110-like164952111749522180Rat
9201979LOC103693968uncharacterized LOC103693968165428316454287611Rat
9169473LOC103693935palladin pseudogene163155260231554209Rat
9205705LOC103693943uncharacterized LOC103693943163576364235780405Rat
9206341LOC103693954cytochrome b-c1 complex subunit 6, mitochondrial pseudogene164120816541209155Rat
9207468LOC103693972low-density lipoprotein receptor-related protein 1-like166001821760037015Rat
9126708LOC10369396560S ribosomal protein L7 pseudogene165363940253640178Rat
9083603LOC103693983uncharacterized LOC103693983166770273667774325Rat
9084629LOC103693980uncharacterized LOC103693980166556086965566780Rat
9216280LOC103693975uncharacterized LOC103693975166080489060817730Rat
9350183LOC103693955mitochondrial import receptor subunit TOM20 homolog pseudogene164341414943414565Rat
9269843LOC103693946uncharacterized LOC103693946163629574336298032Rat
9274278LOC103693966uncharacterized LOC103693966165388579553891736Rat
9368194LOC103693959uncharacterized LOC103693959164830945048325124Rat
9233703LOC103693928uncharacterized LOC103693928162993682529938322Rat
9374545LOC103693961uncharacterized LOC103693961164994255149948954Rat
9324707LOC103693977uncharacterized LOC103693977166399502164000874Rat
9245352LOC103693976fibroin heavy chain-like166256346062567001Rat
9328352LOC103693964uncharacterized LOC103693964165347124553482630Rat
9335847LOC103693950U6 snRNA-associated Sm-like protein LSm3163646792336478204Rat
9253664LOC103693970uncharacterized LOC103693970165921065759222523Rat
9296491LOC103693940uncharacterized LOC103693940163428096734286472Rat
9255264LOC103693945uncharacterized LOC103693945163604628736053444Rat
9297489LOC103693924apelin receptor early endogenous ligand-like162657575726576316Rat
9299863Apelaapelin receptor early endogenous ligand162658210326583828Rat
9371868LOC10369397940S ribosomal protein S15a-like166241831562418731Rat
9265010LOC103693938uncharacterized LOC103693938163255936532579947Rat
9421631LOC103693963uncharacterized LOC103693963165224877252249936Rat
9463928LOC103693973low-density lipoprotein receptor-related protein 8-like166003779560046471Rat
9317204LOC103693937uncharacterized LOC103693937163207394532083771Rat
9424972LOC103693967male-enhanced antigen 1 pseudogene165392349353924789Rat
9473177LOC103693974uncharacterized LOC103693974166058725960590751Rat
9395579LOC103693985uncharacterized LOC103693985166894928368952020Rat
9396457LOC103693971uncharacterized LOC103693971165934196159346953Rat
9442087LOC10369392360S ribosomal protein L22-like 1 pseudogene162511173125112211Rat
9456189LOC103693942uncharacterized LOC103693942163579933835811244Rat
9999338Rps27a-ps15ribosomal protein S27a, pseudogene 15165265664652657181Rat
9999339Rps27a-ps16ribosomal protein S27a, pseudogene 16165311324953113664Rat
11373421LOC108348402uncharacterized LOC108348402165906420859081942Rat
11356250LOC108348396uncharacterized LOC108348396164895551948961516Rat
11442889LOC108353103igE-binding protein-like165558294655585703Rat
11461794LOC108348391actin, alpha skeletal muscle-like162651149226512073Rat
11461826LOC108353097arginine/serine-rich protein PNISR pseudogene162491365524913989Rat
11466176LOC108348399uncharacterized LOC108348399165230552852340724Rat
11473538LOC108348406uncharacterized LOC108348406166260493762606010Rat
11474030LOC108348412uncharacterized LOC108348412166936276469385373Rat
11444080LOC108353100peptidyl-prolyl cis-trans isomerase A pseudogene164393327743933760Rat
11444389LOC108353084glyceraldehyde-3-phosphate dehydrogenase pseudogene163641689036419191Rat
11444632LOC10834840460S ribosomal protein L21 pseudogene166051140560512567Rat
11362354LOC108348394ATP synthase subunit g, mitochondrial pseudogene163249203932493314Rat
11444868LOC10834844360S ribosomal protein L23-like165206622352066653Rat
11445083LOC108348297uncharacterized LOC108348297164483201345318280Rat
11458726LOC108348444uncharacterized LOC108348444165243094752436224Rat
11366572LOC108353101glyceraldehyde-3-phosphate dehydrogenase pseudogene164913385949138138Rat
11372709LOC108353112uncharacterized LOC108353112165722761257282046Rat
11362459LOC108353111uncharacterized LOC108353111164652918646540268Rat
11430756LOC10834844840S ribosomal protein S15a pseudogene166241835462419395Rat
11440895LOC108348393uncharacterized LOC108348393162740212627475702Rat
11442065LOC108348400uncharacterized LOC108348400165853099358565723Rat
11432444LOC108353106uncharacterized LOC108353106166864256568645506Rat
11442344LOC108353099Y-linked testis-specific protein 1-like163054432430610888Rat
11383954LOC108353114glyceraldehyde-3-phosphate dehydrogenase pseudogene163865164638652779Rat
11415534LOC108348408uncharacterized LOC108348408166592230065932808Rat
11416551LOC108348395glutathione S-transferase P pseudogene164065715640657819Rat
11416552LOC10834840960S ribosomal protein L21 pseudogene166927960669280109Rat
11421015LOC108348414uncharacterized LOC108348414166952908069539081Rat
11421454LOC108348445uncharacterized LOC108348445165393373553935451Rat
11407239LOC108348401uncharacterized LOC108348401165870611758723221Rat
11407470LOC108348411uncharacterized LOC108348411166931867369323790Rat
11387230LOC108348457uncharacterized LOC108348457162503936725042056Rat
11387844LOC108353098Y-linked testis-specific protein 1-like163026155530325740Rat
11399682LOC108348461uncharacterized LOC108348461164555469145987407Rat
11378581LOC10835310540S ribosomal protein S10 pseudogene166113318561134373Rat
11411172LOC108348398uncharacterized LOC108348398165082156950838054Rat
11389875LOC10834844260S ribosomal protein L29 pseudogene165130967151310912Rat
11380833Trnae-uuc9transfer RNA glutamic acid (anticodon UUC) 9163613028236130353Rat
11393191LOC108348407uncharacterized LOC108348407166542997465531685Rat
11502132LOC108348460uncharacterized LOC108348460164480932844818260Rat
11479443LOC108348405uncharacterized LOC108348405166159701561640692Rat
11480995LOC108353104glyceraldehyde-3-phosphate dehydrogenase-like165619570556201717Rat
11510605LOC108348410uncharacterized LOC108348410166926131369294350Rat
11498890LOC108348447uncharacterized LOC108348447165648572956517788Rat
11482878LOC108348392high mobility group protein B1 pseudogene162746903527473113Rat
11483970LOC10835310240S ribosomal protein S26-like165024014050243801Rat
11485594LOC10834845960S ribosomal protein L10-like164441755344418615Rat
11492380LOC108348397uncharacterized LOC108348397164900399149022318Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10841D16Wox13118165016919850169312Ratregion
10842D16Mgh5148165016915750169318Ratregion
34007D16Mit3144164734647047346612Ratregion
34066D16Mgh1236164590509745905331Ratregion
34142D16Mgh9247162677035926770607Ratregion
34553D16Mgh6100164905140749051506Ratregion
33636D16Mit1164162590559525905758Ratregion
35200D16Rat102135163461013134610265Ratregion
35280D16Rat19233163530711035307342Ratregion
35419D16Rat18160163188120331881358Ratregion
37054D16Rat17161165325316853253355Ratregion
37766D16Rat46213164028856440288774Ratregion
37820D16Rat28237166008839460088615Ratregion
34894D16Rat29139164924730549247447Ratregion
35022D16Rat101160166863624168636401Ratregion
35022D16Rat101160166859213868592313Ratregion
35024D16Rat1173163997463439974800Ratregion
35026D16Rat3169164477593044776091Ratregion
35861D16Rat4167163595922835959394Ratregion
39604D16Rat99148163281730032817451Ratregion
39628D16Rat69124164627275146272917Ratregion
39642D16Rat63200166247596962476166Ratregion
39718D16Rat68218164522239045222607Ratregion
39776D16Rat72188164234831342348511Ratregion
39838D16Rat109202166390916363909364Ratregion
39920D16Rat70200163670721236707417Ratregion
39936D16Rat96201165020212750202329Ratregion
40416D16Rat10498164056737540567454Ratregion
40450D16Rat103172163991575839915927Ratregion
40524D16Rat67254165001987150020090Ratregion
40742D16Rat71200164274140642741611Ratregion
38428D16Rat53133166653343166533547Ratregion
38594D16Rat52213162650672426506922Ratregion
38712D16Rat50249164467695844677196Ratregion
40030D16Rat98144165050531650505445Ratregion
40166D16Rat65171166177676261776910Ratregion
40234D16Rat60138166401263764012784Ratregion
40320D16Rat66132166150414961504283Ratregion
40320D16Rat66132166149576061495894Ratregion
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38938D16Rat40206166031664960316851Ratregion
38988D16Rat27202166139639461396590Ratregion
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42024D16Arb6188162690577126905958Ratregion
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42028D16Arb8115164905138449051503Ratregion
41248D16Rat58171166905810269058274Ratregion
41264D16Rat61151166412519064125340Ratregion
41344D16Rat59134166906661769066749Ratregion
41526D16Rat62173165882589958826070Ratregion
43070D16Rat118239164049230040492522Ratregion
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43073D16Rat114239166007272760072945Ratregion
43075D16Rat100215166921682469217033Ratregion
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40820D1Rat310224166123069961230938Ratregion
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41766D16Rat110104165515564355155752Ratregion
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67810D16Uwm1188163835244938352662Ratregion
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62443D16Uia1146165718552257185669Ratregion
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62459D16Uia493164754196747542106Ratregion
66392D16Mco7163165084024750840384Ratregion
66539D16Uia5228162617992226180149Ratregion
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2315208D16Nkg45295165914826759148561Ratregion
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2315210D16Nkg53237165918989559190520Ratregion
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2315226D16Nkg71170165998592259986091Ratregion
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2315246D16Nkg25162164812983448129995Ratregion
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2315250D16Nkg107198166767961567679812Ratregion
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2315270D16Nkg66337165976700959767345Ratregion
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2315316D16Nkg10279164656635946566637Ratregion
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2315414D16Nkg83285165893370258933986Ratregion
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7206724D8Mit297114164978842149788534Ratregion
7205962Helt909164918603449186942Ratregion
7206380fe36g08.x10166261734962618667Ratregion
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5038916RH127406220165010755650107759Ratregion
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5036519Tll187162759658627596772Ratregion
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5029423UniSTS:238126545163250951232510056Ratregion
5035002Fgf20198165515274855152945Ratregion
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5500440fc63g12.x1131166082522560825355Ratregion
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5499967UniSTS:235863259166479880564799063Ratregion
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5500322GDB:1874241430163160641331607842Ratregion
5500749D7S1476766166742887767429642Ratregion
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5501141PMC148819P9192164884661148846802Ratregion
5501293RH16017359165051350450513861Ratregion
5501968MARC_21337-21338:1023126946:11093165924408059245172Ratregion
Position Markers

Peak: (D16Mit3)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01647,346,470 - 47,346,612NCBI
Rnor_5.01647,069,602 - 47,069,744UniSTS
RGSC_v3.41647,434,241 - 47,434,384RGD
RGSC_v3.41647,434,242 - 47,434,384UniSTS
RGSC_v3.11647,434,317 - 47,434,459RGD
Celera1642,249,982 - 42,250,124UniSTS
RH 3.4 Map16402.0UniSTS
RH 3.4 Map16402.0RGD
RH 2.0 Map16432.9RGD
SHRSP x BN Map1612.35RGD
Cytogenetic Map16 RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16127556253Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16127556253Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16127556253Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16131816439Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16133160624Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16134465490Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16141240937Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16141240937Rat
631561Hcuc2Hepatic copper content QTL 22.8hepatic copper amount (VT:0003065)liver total copper weight (CMO:0001507)16141240957Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)1624459345244593Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)16109005486162972Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16134074146340741Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)16155018749247447Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)16155018763210301Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16155018763210301Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)16155018763210301Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)16155018763210301Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16172829746728297Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16413635545905331Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16501380245905331Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16501380245905331Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16501380245905331Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16501380250013802Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16501380250169318Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16501380252144919Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16501380264012784Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161939818770590230Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)162075555680316424Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162484654169846541Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162751998072519980Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162834031573340315Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163530711063909364Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163900002184000021Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164151271086512710Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164151271086512710Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164590509753253355Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164655818890668790Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165781635790668790Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165781635790668790Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165781635790668790Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165928577589248943Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general no association with disease or immunoglobin levels noticed 2302026
qtl_general inducing agent and dosage: pristane 150 microliter 2302026
qtl_general measurement method: serum samples were collected on days 6, 14, 35, 49, 100, and desired levels were quantified by ELISA 2302026
qtl_general software used: Map Manager QTX software and R/qtl in R-Plus package 2302026
qtl_general this region has no association to rheumatoid arthritis 2302026