Mef2c (myocyte enhancer factor 2C) - Rat Genome Database

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Gene: Mef2c (myocyte enhancer factor 2C) Rattus norvegicus
Analyze
Symbol: Mef2c
Name: myocyte enhancer factor 2C
RGD ID: 1563119
Description: Enables DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in several processes, including cellular response to retinoic acid; dentate gyrus development; and transdifferentiation. Located in nucleus and sarcomere. Used to study myocardial infarction. Biomarker of status epilepticus. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 20. Orthologous to human MEF2C (myocyte enhancer factor 2C); PARTICIPATES IN mitogen activated protein kinase signaling pathway; INTERACTS WITH (+)-pilocarpine; (S)-nicotine; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC499497; LOC685671; myocyte-specific enhancer factor 2C; RGD1563119; similar to MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C); similar to myocyte enhancer factor 2C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2213,973,299 - 14,136,065 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl213,993,438 - 14,132,880 (+)Ensembl
Rnor_6.0211,658,534 - 11,822,788 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl211,658,568 - 11,822,787 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0211,521,053 - 11,684,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4212,331,078 - 12,346,520 (-)NCBIRGSC3.4rn4RGSC3.4
Celera210,288,159 - 10,449,731 (+)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acadesine  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
amphetamine  (EXP)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
caffeine  (EXP)
cannabidiol  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
dantrolene  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
ferric oxide  (ISO)
formaldehyde  (ISO)
Goe 6976  (ISO)
hydrogen peroxide  (ISO)
icariin  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
isotretinoin  (ISO)
isoxazoles  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
maneb  (ISO)
manganese(II) chloride  (EXP)
metformin  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mifepristone  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nicotine  (EXP)
nitrofen  (EXP)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylephrine  (EXP,ISO)
phenylmercury acetate  (ISO)
phosgene  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
resveratrol  (ISO)
rofecoxib  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
spermine  (ISO)
streptozocin  (ISO)
succimer  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic process  (IEA)
B cell homeostasis  (ISO,ISS)
B cell proliferation  (ISO,ISS)
B cell receptor signaling pathway  (ISO,ISS)
blood vessel development  (ISO)
blood vessel remodeling  (ISO)
cardiac muscle cell differentiation  (ISO)
cardiac muscle hypertrophy in response to stress  (ISO)
cardiac ventricle formation  (ISO)
cartilage morphogenesis  (ISO)
cell differentiation  (IBA)
cell fate commitment  (ISO)
cell morphogenesis involved in neuron differentiation  (ISO,ISS)
cellular response to calcium ion  (ISO,ISS)
cellular response to fluid shear stress  (ISO,ISS)
cellular response to glucose stimulus  (IEP)
cellular response to growth factor stimulus  (IDA)
cellular response to lipopolysaccharide  (ISO,ISS)
cellular response to organic cyclic compound  (IEP)
cellular response to parathyroid hormone stimulus  (IEA,ISO,ISS)
cellular response to retinoic acid  (IDA)
cellular response to transforming growth factor beta stimulus  (IEA,ISO,ISS)
cellular response to trichostatin A  (ISO,ISS)
cellular response to xenobiotic stimulus  (ISO,ISS)
chondrocyte differentiation  (ISO)
dentate gyrus development  (IEP)
embryonic heart tube development  (ISO)
embryonic skeletal system morphogenesis  (ISO)
embryonic viscerocranium morphogenesis  (ISO)
endochondral ossification  (ISO)
epithelial cell proliferation involved in renal tubule morphogenesis  (ISO,ISS)
excitatory postsynaptic potential  (ISO,ISS)
gene expression  (ISO)
germinal center formation  (ISO,ISS)
glomerulus morphogenesis  (ISO,ISS)
heart development  (IBA,IEA,IEP,ISO)
heart looping  (ISO,ISS)
humoral immune response  (ISO,ISS)
learning or memory  (ISO,ISS)
MAPK cascade  (IEA,ISO,ISS)
melanocyte differentiation  (ISO,ISS)
monocyte differentiation  (ISO)
muscle cell fate determination  (ISO)
myotube differentiation  (IEA,ISO)
negative regulation of blood vessel endothelial cell migration  (IEA,ISO)
negative regulation of epithelial cell proliferation  (ISO)
negative regulation of gene expression  (ISO,ISS)
negative regulation of neuron apoptotic process  (ISO,ISS)
negative regulation of ossification  (IEA,ISO,ISS)
negative regulation of transcription by RNA polymerase II  (IEA,ISO,ISS)
negative regulation of vascular associated smooth muscle cell migration  (IEA,ISO)
negative regulation of vascular associated smooth muscle cell proliferation  (IEA,ISO)
negative regulation of vascular endothelial cell proliferation  (IEA,ISO)
nephron tubule epithelial cell differentiation  (ISO,ISS)
nervous system development  (IEA)
neural crest cell differentiation  (ISO,ISS)
neuron development  (ISO,ISS)
neuron differentiation  (IEA,ISO,ISS)
neuron migration  (ISO,ISS)
osteoblast differentiation  (ISO)
outflow tract morphogenesis  (ISO)
platelet formation  (ISO,ISS)
positive regulation of alkaline phosphatase activity  (ISO,ISS)
positive regulation of B cell proliferation  (ISO,ISS)
positive regulation of behavioral fear response  (ISO,ISS)
positive regulation of bone mineralization  (ISO,ISS)
positive regulation of cardiac muscle cell differentiation  (IEA,ISO,ISS)
positive regulation of cardiac muscle cell proliferation  (ISO,ISS)
positive regulation of cardiac muscle hypertrophy  (IMP)
positive regulation of cell proliferation in bone marrow  (ISO)
positive regulation of gene expression  (IEA,ISO)
positive regulation of macrophage apoptotic process  (ISO,ISS)
positive regulation of myoblast differentiation  (IEA,ISO,ISS)
positive regulation of neuron differentiation  (ISO,ISS)
positive regulation of osteoblast differentiation  (ISO,ISS)
positive regulation of skeletal muscle cell differentiation  (IEA,ISO,ISS)
positive regulation of skeletal muscle tissue development  (IEA,ISO,ISS)
positive regulation of transcription by RNA polymerase II  (IBA,IEA,IMP,ISO,ISS)
positive regulation of transcription, DNA-templated  (IDA,IMP,ISO)
primary heart field specification  (ISO,ISS)
regulation of AMPA receptor activity  (ISO,ISS)
regulation of dendritic spine development  (ISO,ISS)
regulation of germinal center formation  (ISO,ISS)
regulation of megakaryocyte differentiation  (ISO,ISS)
regulation of neuron apoptotic process  (ISO,ISS)
regulation of neurotransmitter secretion  (ISO,ISS)
regulation of NMDA receptor activity  (ISO,ISS)
regulation of sarcomere organization  (ISO)
regulation of synapse assembly  (ISO)
regulation of synaptic activity  (ISO,ISS)
regulation of synaptic plasticity  (ISO,ISS)
regulation of synaptic transmission, glutamatergic  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
regulation of transcription, DNA-templated  (ISO)
renal tubule morphogenesis  (ISO,ISS)
response to nutrient levels  (IEP)
response to vitamin E  (IEP)
roof of mouth development  (ISO)
secondary heart field specification  (ISO,ISS)
semaphorin-plexin signaling pathway involved in axon guidance  (ISO)
sinoatrial valve morphogenesis  (ISO,ISS)
skeletal muscle cell differentiation  (ISO)
skeletal muscle tissue development  (ISO)
smooth muscle cell differentiation  (ISO)
sympathetic neuron axon guidance  (ISO)
transdifferentiation  (IMP)
ventricular cardiac muscle cell differentiation  (ISO,ISS)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Ballal K, etal., Mol Cell Biochem. 2010 Nov;344(1-2):221-30. Epub 2010 Jul 31.
2. Feng B, etal., Am J Physiol Endocrinol Metab. 2008 Jun;294(6):E1119-26. Epub 2008 Apr 15.
3. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Kobarg CB, etal., FEBS Lett. 2005 May 9;579(12):2615-22. Epub 2005 Apr 8.
5. Leupin O, etal., J Bone Miner Res. 2007 Dec;22(12):1957-67.
6. Munoz JP, etal., Biochem Biophys Res Commun. 2009 Oct 9;388(1):155-60. Epub 2009 Aug 3.
7. OMIM Disease Annotation Pipeline
8. Pereira AH, etal., PLoS One. 2009 Dec 29;4(12):e8472.
9. Pipeline to import KEGG annotations from KEGG into RGD
10. Poizat C, etal., Mol Cell Biol. 2000 Dec;20(23):8643-54.
11. Ren X, etal., Life Sci. 2007 Jun 20;81(2):89-96. Epub 2007 May 13.
12. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. RGD automated import pipeline for gene-chemical interactions
14. Schulte I, etal., Transplantation. 2006 Mar 15;81(5):736-45.
15. Scorza CA, etal., Arq Neuropsiquiatr. 2008 Sep;66(3B):731-5.
16. Suzaki Y, etal., J Biol Chem. 2002 Mar 15;277(11):9614-21. Epub 2002 Jan 8.
17. Xu J, etal., J Biol Chem. 2006 Apr 7;281(14):9152-62. Epub 2006 Feb 9.
18. Zang MX, etal., J Biol Chem. 2004 Dec 24;279(52):54258-63. Epub 2004 Oct 14.
19. Zang MX, etal., J Cell Biochem. 2004 Dec 15;93(6):1255-66.
20. Zhang Y, etal., Aquat Toxicol. 2013 Jul 29;142-143C:26-32. doi: 10.1016/j.aquatox.2013.07.014.
Additional References at PubMed
PMID:7677753   PMID:7760790   PMID:8035824   PMID:8455629   PMID:8506376   PMID:8668199   PMID:8900141   PMID:9162005   PMID:9738004   PMID:9770491   PMID:9778514   PMID:9857019  
PMID:9858528   PMID:10395786   PMID:10458488   PMID:10531040   PMID:10983972   PMID:11081517   PMID:11160896   PMID:11554755   PMID:11744164   PMID:12130539   PMID:14515274   PMID:14762206  
PMID:15735306   PMID:15743821   PMID:15890826   PMID:15998798   PMID:16043483   PMID:16140986   PMID:16510869   PMID:16680724   PMID:16775627   PMID:16818234   PMID:17336904   PMID:17352741  
PMID:17420000   PMID:17786239   PMID:17875930   PMID:18079734   PMID:18086704   PMID:18093911   PMID:18278031   PMID:18326819   PMID:18438409   PMID:18579729   PMID:18599437   PMID:18599438  
PMID:18955699   PMID:19035347   PMID:19103177   PMID:19169261   PMID:19204083   PMID:19211936   PMID:19477969   PMID:19796622   PMID:20181743   PMID:20399744   PMID:20691899   PMID:21170291  
PMID:21556048   PMID:21610032   PMID:21652706   PMID:21954104   PMID:22147266   PMID:22275376   PMID:22496871   PMID:23328440   PMID:23632743   PMID:24008018   PMID:25287062   PMID:25931508  
PMID:26184978   PMID:27427476   PMID:28473466   PMID:28799067  


Genomics

Comparative Map Data
Mef2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2213,973,299 - 14,136,065 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl213,993,438 - 14,132,880 (+)Ensembl
Rnor_6.0211,658,534 - 11,822,788 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl211,658,568 - 11,822,787 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0211,521,053 - 11,684,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4212,331,078 - 12,346,520 (-)NCBIRGSC3.4rn4RGSC3.4
Celera210,288,159 - 10,449,731 (+)NCBICelera
Cytogenetic Map2q11NCBI
MEF2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl588,717,117 - 88,904,257 (-)EnsemblGRCh38hg38GRCh38
GRCh38588,717,117 - 88,904,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37588,012,934 - 88,199,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36588,051,922 - 88,214,780 (-)NCBINCBI36hg18NCBI36
Build 34588,051,921 - 88,214,780NCBI
Celera583,907,023 - 84,092,551 (-)NCBI
Cytogenetic Map5q14.3NCBI
HuRef583,218,989 - 83,404,187 (-)NCBIHuRef
CHM1_1587,447,103 - 87,632,656 (-)NCBICHM1_1
Mef2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391383,652,136 - 83,815,198 (+)NCBIGRCm39mm39
GRCm39 Ensembl1383,652,153 - 83,815,199 (+)Ensembl
GRCm381383,504,017 - 83,667,079 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1383,504,034 - 83,667,080 (+)EnsemblGRCm38mm10GRCm38
MGSCv371383,643,033 - 83,806,684 (+)NCBIGRCm37mm9NCBIm37
MGSCv361383,981,532 - 84,141,286 (+)NCBImm8
Celera1385,760,645 - 85,921,930 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1343.68NCBI
Mef2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541822,537,285 - 22,701,434 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541822,537,388 - 22,701,434 (+)NCBIChiLan1.0ChiLan1.0
MEF2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1526,620,837 - 26,786,426 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl526,681,700 - 26,786,426 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0526,480,489 - 26,650,813 (+)NCBIMhudiblu_PPA_v0panPan3
MEF2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1319,778,997 - 19,948,203 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl319,779,007 - 19,943,852 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha321,145,574 - 21,314,826 (+)NCBI
ROS_Cfam_1.0319,687,661 - 19,856,893 (+)NCBI
UMICH_Zoey_3.1319,665,907 - 19,834,881 (+)NCBI
UNSW_CanFamBas_1.0319,629,618 - 19,798,838 (+)NCBI
UU_Cfam_GSD_1.0319,916,077 - 20,085,117 (+)NCBI
Mef2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213175,400,303 - 175,565,279 (+)NCBI
SpeTri2.0NW_0049364697,060,480 - 7,225,497 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEF2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl296,122,407 - 96,296,842 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1296,122,407 - 96,296,927 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2298,794,388 - 98,885,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MEF2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1482,702,378 - 82,887,491 (-)NCBI
ChlSab1.1 Ensembl482,706,738 - 82,788,152 (-)Ensembl
Vero_WHO_p1.0NW_02366604931,746,488 - 31,916,073 (-)NCBI
Mef2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247438,072,871 - 8,235,174 (-)NCBI

Position Markers
AU047435  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2213,978,829 - 13,978,972 (+)MAPPERmRatBN7.2
Rnor_6.0211,664,081 - 11,664,223NCBIRnor6.0
Rnor_5.0211,526,561 - 11,526,703UniSTSRnor5.0
RGSC_v3.4212,104,196 - 12,104,338UniSTSRGSC3.4
Celera210,293,706 - 10,293,848UniSTS
Cytogenetic Map2q11UniSTS
RH133929  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2214,133,156 - 14,133,367 (+)MAPPERmRatBN7.2
Rnor_6.0211,819,881 - 11,820,091NCBIRnor6.0
Rnor_5.0211,682,042 - 11,682,252UniSTSRnor5.0
RGSC_v3.4212,329,295 - 12,329,505UniSTSRGSC3.4
Celera210,446,824 - 10,447,034UniSTS
Cytogenetic Map2q11UniSTS
AV011172  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2214,133,156 - 14,133,298 (+)MAPPERmRatBN7.2
Rnor_6.0211,819,881 - 11,820,022NCBIRnor6.0
Rnor_5.0211,682,042 - 11,682,183UniSTSRnor5.0
Celera210,446,824 - 10,446,965UniSTS
Cytogenetic Map2q11UniSTS
G10647  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2214,132,095 - 14,132,332 (+)MAPPERmRatBN7.2
Rnor_6.0211,818,820 - 11,819,056NCBIRnor6.0
Rnor_5.0211,680,981 - 11,681,217UniSTSRnor5.0
RGSC_v3.4212,330,330 - 12,330,566UniSTSRGSC3.4
Celera210,445,763 - 10,445,999UniSTS
Cytogenetic Map2q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:158
Count of miRNA genes:112
Interacting mature miRNAs:123
Transcripts:ENSRNOT00000041296, ENSRNOT00000041538, ENSRNOT00000047689
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 43 16 6 14 6 8 11 54 20 32 11 8
Low 1 41 35 5 35 20 15 9
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006223955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000075931   ⟹   ENSRNOP00000067970
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl213,993,438 - 14,132,614 (+)Ensembl
Rnor_6.0 Ensembl211,658,568 - 11,819,436 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076084   ⟹   ENSRNOP00000068421
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl211,658,568 - 11,820,093 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076136   ⟹   ENSRNOP00000068094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl213,993,438 - 14,132,614 (+)Ensembl
Rnor_6.0 Ensembl211,658,568 - 11,819,436 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076230   ⟹   ENSRNOP00000068527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl213,993,466 - 14,132,880 (+)Ensembl
Rnor_6.0 Ensembl211,658,568 - 11,820,093 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076239   ⟹   ENSRNOP00000068373
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl211,658,568 - 11,822,787 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076408   ⟹   ENSRNOP00000068328
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl211,658,568 - 11,818,308 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076416   ⟹   ENSRNOP00000068323
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl211,658,568 - 11,818,308 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076481   ⟹   ENSRNOP00000067963
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl213,993,438 - 14,132,614 (+)Ensembl
Rnor_6.0 Ensembl211,658,568 - 11,820,075 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076710   ⟹   ENSRNOP00000068307
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl211,658,568 - 11,820,594 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076992   ⟹   ENSRNOP00000067948
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl213,993,438 - 14,132,235 (+)Ensembl
Rnor_6.0 Ensembl211,658,568 - 11,818,989 (+)Ensembl
RefSeq Acc Id: XM_006231731   ⟹   XP_006231793
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,212 - 14,136,065 (+)NCBI
Rnor_6.0211,678,513 - 11,822,788 (+)NCBI
Rnor_5.0211,521,053 - 11,684,949 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231733   ⟹   XP_006231795
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2214,042,155 - 14,131,584 (+)NCBI
Rnor_6.0211,727,917 - 11,822,788 (+)NCBI
Rnor_5.0211,521,053 - 11,684,949 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591163   ⟹   XP_017446652
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,973,302 - 14,131,584 (+)NCBI
Rnor_6.0211,658,535 - 11,822,788 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103393   ⟹   XP_038959321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,205 - 14,131,584 (+)NCBI
RefSeq Acc Id: XM_039103394   ⟹   XP_038959322
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,973,299 - 14,131,584 (+)NCBI
RefSeq Acc Id: XM_039103395   ⟹   XP_038959323
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,215 - 14,136,065 (+)NCBI
RefSeq Acc Id: XM_039103396   ⟹   XP_038959324
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,209 - 14,136,065 (+)NCBI
RefSeq Acc Id: XM_039103397   ⟹   XP_038959325
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,213 - 14,131,584 (+)NCBI
RefSeq Acc Id: XM_039103398   ⟹   XP_038959326
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,217 - 14,136,065 (+)NCBI
RefSeq Acc Id: XM_039103399   ⟹   XP_038959327
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,212 - 14,136,065 (+)NCBI
RefSeq Acc Id: XM_039103401   ⟹   XP_038959329
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,206 - 14,131,584 (+)NCBI
RefSeq Acc Id: XM_039103402   ⟹   XP_038959330
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,211 - 14,136,065 (+)NCBI
RefSeq Acc Id: XM_039103403   ⟹   XP_038959331
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,208 - 14,131,584 (+)NCBI
RefSeq Acc Id: XM_039103404   ⟹   XP_038959332
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2213,993,207 - 14,136,065 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_006231793   ⟸   XM_006231731
- Peptide Label: isoform X1
- UniProtKB: A0A096MJY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231795   ⟸   XM_006231733
- Peptide Label: isoform X1
- UniProtKB: A0A096MJY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446652   ⟸   XM_017591163
- Peptide Label: isoform X1
- UniProtKB: A0A096MJY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000067970   ⟸   ENSRNOT00000075931
RefSeq Acc Id: ENSRNOP00000067948   ⟸   ENSRNOT00000076992
RefSeq Acc Id: ENSRNOP00000068373   ⟸   ENSRNOT00000076239
RefSeq Acc Id: ENSRNOP00000068527   ⟸   ENSRNOT00000076230
RefSeq Acc Id: ENSRNOP00000068094   ⟸   ENSRNOT00000076136
RefSeq Acc Id: ENSRNOP00000068421   ⟸   ENSRNOT00000076084
RefSeq Acc Id: ENSRNOP00000068307   ⟸   ENSRNOT00000076710
RefSeq Acc Id: ENSRNOP00000067963   ⟸   ENSRNOT00000076481
RefSeq Acc Id: ENSRNOP00000068323   ⟸   ENSRNOT00000076416
RefSeq Acc Id: ENSRNOP00000068328   ⟸   ENSRNOT00000076408
RefSeq Acc Id: XP_038959322   ⟸   XM_039103394
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959321   ⟸   XM_039103393
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959329   ⟸   XM_039103401
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038959332   ⟸   XM_039103404
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038959331   ⟸   XM_039103403
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038959324   ⟸   XM_039103396
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038959330   ⟸   XM_039103402
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038959327   ⟸   XM_039103399
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038959325   ⟸   XM_039103397
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038959323   ⟸   XM_039103395
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959326   ⟸   XM_039103398
- Peptide Label: isoform X6
Protein Domains
MADS-box

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691064
Promoter ID:EPDNEW_R1572
Type:initiation region
Name:Mef2c_1
Description:myocyte enhancer factor 2C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0211,658,583 - 11,658,643EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563119 AgrOrtholog
Ensembl Genes ENSRNOG00000033134 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000067948 UniProtKB/TrEMBL
  ENSRNOP00000067963 UniProtKB/TrEMBL
  ENSRNOP00000067970 UniProtKB/TrEMBL
  ENSRNOP00000068094 UniProtKB/TrEMBL
  ENSRNOP00000068307 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000068323 UniProtKB/TrEMBL
  ENSRNOP00000068328 UniProtKB/TrEMBL
  ENSRNOP00000068373 UniProtKB/TrEMBL
  ENSRNOP00000068421 UniProtKB/TrEMBL
  ENSRNOP00000068527 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075931 UniProtKB/TrEMBL
  ENSRNOT00000076084 UniProtKB/TrEMBL
  ENSRNOT00000076136 UniProtKB/TrEMBL
  ENSRNOT00000076230 UniProtKB/TrEMBL
  ENSRNOT00000076239 UniProtKB/TrEMBL
  ENSRNOT00000076408 UniProtKB/TrEMBL
  ENSRNOT00000076416 UniProtKB/TrEMBL
  ENSRNOT00000076481 UniProtKB/TrEMBL
  ENSRNOT00000076710 UniProtKB/Swiss-Prot
  ENSRNOT00000076992 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1810.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HJURP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MADS_MEF2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_MADSbox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_MADSbox_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:499497 UniProtKB/Swiss-Prot
NCBI Gene 499497 ENTREZGENE
Pfam HJURP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRF-TF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mef2c PhenoGen
PRINTS MADSDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MADS_BOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MADS_BOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MADS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55455 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MJ09_RAT UniProtKB/TrEMBL
  A0A096MJ23_RAT UniProtKB/TrEMBL
  A0A096MJD9_RAT UniProtKB/TrEMBL
  A0A096MJY4 ENTREZGENE
  A0A096MJZ6_RAT UniProtKB/TrEMBL
  A0A096MK01_RAT UniProtKB/TrEMBL
  A0A096MK43_RAT UniProtKB/TrEMBL
  A0A096MK88_RAT UniProtKB/TrEMBL
  A0A096MKI4_RAT UniProtKB/TrEMBL
  MEF2C_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Mef2c  myocyte enhancer factor 2C  LOC685671  similar to myocyte enhancer factor 2C  Data Merged 737654 PROVISIONAL
2008-03-07 Mef2c  myocyte enhancer factor 2C  RGD1563119_predicted  similar to MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685671  similar to myocyte enhancer factor 2C      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-10 RGD1563119_predicted  similar to MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) (predicted)      Name updated 1299863 APPROVED
2006-03-07 RGD1563119_predicted  similar to MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) (predicted)  LOC499497  similar to MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499497  similar to MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)      Symbol and Name status set to provisional 70820 PROVISIONAL