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Gene: Usf1 (upstream transcription factor 1) Rattus norvegicus
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Symbol: Usf1
Name: upstream transcription factor 1
Description: Exhibits DNA binding activity; DNA-binding transcription factor activity; and identical protein binding activity. Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in glucose metabolic process and positive regulation of transcription by RNA polymerase II. Localizes to the nucleus. Human ortholog(s) of this gene implicated in cardiovascular system disease and type 2 diabetes mellitus. Orthologous to human USF1 (upstream transcription factor 1); INTERACTS WITH 1,2-dimethylhydrazine; 1,3-dinitrobenzene; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: upstream stimulatory factor 1
Orthologs:
Homo sapiens (human) : USF1 (upstream transcription factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Usf1 (upstream transcription factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Usf1 (upstream transcription factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : USF1 (upstream transcription factor 1)
Canis lupus familiaris (dog) : USF1 (upstream transcription factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Usf1 (upstream transcription factor 1)
Sus scrofa (pig) : USF1 (upstream transcription factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01389,797,750 - 89,805,561 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,797,800 - 89,805,558 (+)Ensembl
Rnor_5.01394,424,884 - 94,433,098 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,336,705 - 87,344,466 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11387,525,588 - 87,533,349 (+)NCBI
Celera1383,475,910 - 83,483,671 (+)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Usf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620974
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.