Prl (prolactin) - Rat Genome Database
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Gene: Prl (prolactin) Rattus norvegicus
Analyze
Symbol: Prl
Name: prolactin
RGD ID: 3403
Description: Predicted to have hormone activity and prolactin receptor binding activity. Involved in several processes, including parturition; response to estradiol; and response to lipopolysaccharide. Localizes to extracellular region and secretory granule. Used to study portal hypertension and prolactinoma. Biomarker of hyperprolactinemia; prolactinoma; and renovascular hypertension. Human ortholog(s) of this gene implicated in carotid artery disease. Orthologous to human PRL (prolactin); PARTICIPATES IN cytokine mediated signaling pathway; Jak-Stat signaling pathway; INTERACTS WITH (S)-amphetamine; 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Gha1; growth hormone a1; Prl1a1; PRLB; PRLSD1; Prol; prolactin family 1, subfamily a, member 1; RATPRLSD1; RNPROL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Is Marker For: Strains:   SS.LEW-(D17Rat65-Prl)/Ayd  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21737,859,999 - 37,870,062 (-)NCBI
Rnor_6.0 Ensembl1739,814,244 - 39,824,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01739,814,236 - 39,824,299 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01741,720,751 - 41,730,813 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41744,699,101 - 44,709,162 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11744,701,945 - 44,712,003 (-)NCBI
Celera1737,551,071 - 37,561,021 (-)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-amphetamine  (EXP,ISO)
(S)-duloxetine hydrochloride  (ISO)
(Z)-chlorprothixene  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1-(3-chlorophenyl)piperazine  (ISO)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-bis(4-hydroxyphenyl)propionitrile  (EXP)
2,4-D  (EXP)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
2-methoxyethanol  (EXP)
3',5'-cyclic AMP  (EXP,ISO)
3,3',5-triiodo-L-thyronine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-ethylphenol  (EXP,ISO)
4-nonylphenol  (EXP,ISO)
4-octylphenol  (EXP,ISO)
4-Propylphenol  (EXP,ISO)
5-azacytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
7,12-dimethyltetraphene  (EXP)
8-Br-cAMP  (EXP,ISO)
actinomycin D  (ISO)
alpha-methyl-L-dopa  (ISO)
alpha-naphthoflavone  (EXP)
amiodarone  (EXP)
amisulpride  (EXP,ISO)
ammonia  (EXP)
ammonium chloride  (EXP)
amoxapine  (ISO)
apomorphine  (ISO)
aripiprazole  (EXP,ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (EXP)
beta-hexachlorocyclohexane  (ISO)
beta-naphthoflavone  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bromocriptine  (EXP,ISO)
bucladesine  (ISO)
buspirone  (EXP,ISO)
butan-1-ol  (ISO)
cabergoline  (EXP,ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP)
Calcimycin  (EXP)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (ISO)
Cannabinol  (ISO)
carmoxirole  (EXP)
carmustine  (ISO)
cefpodoxime  (ISO)
cetrorelix  (EXP)
chlorpromazine  (ISO)
chlorprothixene  (ISO)
chromium atom  (ISO)
chromium(6+)  (EXP)
cimetidine  (ISO)
cisplatin  (ISO)
citalopram  (ISO)
clomiphene  (ISO)
clomipramine  (ISO)
clonidine  (EXP,ISO)
clonidine (amino form)  (EXP,ISO)
clonidine (imino form)  (EXP,ISO)
clozapine  (EXP,ISO)
cocaine  (EXP,ISO)
colforsin daropate hydrochloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
corticosterone  (EXP)
cortisol  (EXP)
coumestrol  (EXP)
CU-O LINKAGE  (EXP)
cyanazine  (EXP)
cyclosporin A  (EXP)
cyproheptadine  (ISO)
cyproterone acetate  (EXP,ISO)
cytarabine  (ISO)
D-penicillamine  (ISO)
daidzein  (EXP)
danazol  (ISO)
DDE  (EXP)
dehydroepiandrosterone  (ISO)
dehydroepiandrosterone sulfate  (ISO)
dexamethasone  (ISO)
diclofenac  (ISO)
dieldrin  (EXP)
diethylstilbestrol  (EXP,ISO)
domperidone  (EXP,ISO)
dopamine  (EXP,ISO)
doxapram  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epinine  (ISO)
equol  (EXP)
estra-1,3,5(10)-triene-3,16beta-diol  (EXP)
estriol  (EXP,ISO)
estrone  (EXP,ISO)
ethanol  (EXP)
ethylenediaminetetraacetic acid  (ISO)
famotidine  (ISO)
fenfluramine  (EXP,ISO)
fluoxetine  (EXP,ISO)
fluphenazine  (ISO)
fulvestrant  (EXP,ISO)
glyphosate  (EXP)
gossypol  (EXP)
haloperidol  (EXP,ISO)
Haloperidol decanoate  (ISO)
herbicide  (EXP)
herbimycin  (ISO)
hexachlorobenzene  (EXP)
idazoxan  (EXP)
imidacloprid  (ISO)
indometacin  (EXP)
isoprenaline  (EXP)
ketoconazole  (EXP)
L-ascorbic acid  (EXP)
labetalol  (ISO)
Lead oxide  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lisuride  (EXP,ISO)
lithium atom  (EXP)
lithium hydride  (EXP)
losartan  (EXP)
magnesium atom  (ISO)
mancozeb  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP)
masoprocol  (EXP)
medroxyprogesterone acetate  (ISO)
melatonin  (EXP)
mesulergine  (EXP)
metformin  (ISO)
methadone  (ISO)
methamphetamine  (ISO)
methomyl  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
metoclopramide  (EXP,ISO)
mifepristone  (EXP,ISO)
mirtazapine  (ISO)
Molindone  (ISO)
molybdenum atom  (ISO)
morphine  (EXP)
Moxestrol  (EXP)
N-acetyl-L-cysteine  (EXP)
N-BUTYL-11-[(7R,8R,9S,13S,14S,17S)-3,17-DIHYDROXY-13-METHYL-7,8,9,11,12,13,14,15,16,17-DECAHYDRO-6H-CYCLOPENTA[A]PHENANTHREN-7-YL]-N-METHYLUNDECANAMIDE  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
nalbuphine  (ISO)
Nalmefene  (ISO)
Nalorphine  (ISO)
naloxone  (EXP,ISO)
nifedipine  (EXP)
nitric oxide  (ISO)
nitrofurazone  (EXP)
Nonylphenol  (EXP)
octreotide  (EXP,ISO)
olanzapine  (ISO)
omeprazole  (ISO)
ozone  (EXP)
paliperidone palmitate  (ISO)
paraquat  (ISO)
PCB138  (EXP)
pentobarbital  (EXP)
perfluorononanoic acid  (EXP)
perphenazine  (EXP,ISO)
phenytoin  (EXP)
PhIP  (EXP,ISO)
phorbol 13-acetate 12-myristate  (EXP)
pimozide  (ISO)
pindolol  (EXP,ISO)
progesterone  (EXP,ISO)
propofol  (ISO)
prostaglandin E2  (ISO)
prostaglandin F2alpha  (EXP)
pyridoxal 5'-phosphate  (EXP)
quercetin  (EXP,ISO)
quetiapine fumarate  (ISO)
quinacrine  (EXP)
raloxifene  (ISO)
ranitidine  (ISO)
reserpine  (EXP)
resveratrol  (EXP)
rimonabant  (EXP,ISO)
risperidone  (EXP,ISO)
rottlerin  (ISO)
simazine  (EXP)
sodium arsenite  (EXP,ISO)
sophoraflavanone B  (EXP)
staurosporine  (ISO)
sulpiride  (EXP,ISO)
Talipexole dihydrochloride  (EXP)
tamoxifen  (EXP,ISO)
temozolomide  (EXP)
Terguride  (ISO)
testosterone  (EXP,ISO)
testosterone enanthate  (EXP)
tetrachloromethane  (EXP)
tetraphene  (EXP)
thimerosal  (ISO)
thioridazine  (ISO)
titanium dioxide  (ISO)
tofacitinib  (EXP)
toxaphene  (EXP)
trichloroethene  (EXP)
triclosan  (ISO)
trifluoperazine  (ISO)
triptorelin  (EXP,ISO)
urethane  (ISO)
venlafaxine hydrochloride  (ISO)
verapamil  (ISO)
vitamin E  (EXP)
yohimbine  (ISO)
zinc atom  (EXP,ISO)
zinc(0)  (EXP,ISO)
zotepine  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Ahonen TJ, etal., Endocrinology 2002 Jan;143(1):228-38.
2. Borges BC, etal., Horm Behav. 2007 Jul 25;.
3. Breigeiron MK, etal., Life Sci. 2007 Apr 3;80(17):1627-34. Epub 2007 Jan 27.
4. Cooke NE and Baxter JD, Nature 1982 Jun 17;297(5867):603-6.
5. Cooke NE, etal., J Biol Chem 1980 Jul 10;255(13):6502-10.
6. Fell MJ, etal., Psychopharmacology (Berl). 2007 Oct;194(2):221-31. Epub 2007 Jun 21.
7. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. Gilchrist CA and Shull JD, Mol Cell Endocrinol 1993 Apr;92(2):201-6.
9. GOA data from the GO Consortium
10. Gubbins EJ, etal., J Biol Chem 1980 Sep 25;255(18):8655-62.
11. Hattori N, etal., Endocrinology. 2007 May;148(5):2465-70. Epub 2007 Feb 15.
12. Huerta-Ocampo I, etal., Neuroendocrinology. 2007;85(1):1-15. Epub 2007 Mar 5.
13. Jimenez-Ortega V, etal., Endocrine. 2006 Dec;30(3):269-78.
14. Laverriere JN, etal., EMBO J 1983;2(9):1493-9.
15. Maurer RA, etal., J Biol Chem 1981 Oct 25;256(20):10524-8.
16. MGD data from the GO Consortium
17. Moon HJ, etal., J Reprod Dev. 2007 Apr;53(2):333-44. Epub 2006 Dec 27.
18. Muldoon MF, etal., J Clin Endocrinol Metab. 2006 Feb;91(2):718-21. Epub 2005 Nov 22.
19. Muldoon MF, etal., Stroke. 2007 Aug;38(8):2228-33. Epub 2007 Jul 12.
20. Naef L and Woodside B, Endocrinology. 2007 Sep 13;.
21. NCBI rat LocusLink and RefSeq merged data July 26, 2002
22. Nephew BC, etal., Reproduction. 2007 Jul;134(1):155-60.
23. Papageorgiou A and Denef C, Endocrinology. 2007 Mar;148(3):1384-95. Epub 2006 Nov 22.
24. Pijl H, etal., Acta Endocrinol (Copenh). 1993 Apr;128(4):319-24.
25. Pipeline to import KEGG annotations from KEGG into RGD
26. Poletini MO, etal., Am J Physiol Endocrinol Metab. 2007 Aug 28;.
27. Prigent-Tessier A, etal., Endocrinology 2001 Mar;142(3):1242-50.
28. Puntheeranurak S, etal., Can J Physiol Pharmacol. 2006 Oct;84(10):993-1002.
29. Rachon D, etal., Horm Metab Res. 2007 Apr;39(4):256-61.
30. Radikova Z, etal., J Hum Hypertens. 2006 Jul;20(7):510-6. Epub 2006 Apr 13.
31. RGD automated data pipeline
32. RGD automated import pipeline for gene-chemical interactions
33. Schernthaner G, etal., Diabetologia. 1985 Mar;28(3):138-42.
34. Scorticati C, etal., Neuroimmunomodulation. 2006;13(3):152-9. Epub 2006 Nov 21.
35. Shaw-Bruha CM, etal., Biochim Biophys Acta 1998 Nov 8;1442(2-3):304-13.
36. Shull JD and Gorski J, Endocrinology 1989 Jan;124(1):279-85.
37. Shull JD and Gorski J, Mol Pharmacol 1990 Feb;37(2):215-21.
38. Shull JD Mol Cell Endocrinol 1991 Nov;82(1):R17-23.
39. Spuch C, etal., Endocrine. 2007 Apr;31(2):119-24.
40. Szawka RE, etal., Brain Res Bull. 2007 Jun 15;73(1-3):127-34. Epub 2007 Mar 28.
41. Szpirer C, etal., Mamm Genome 1998 Sep;9(9):721-34
42. Taffetani S, etal., BMC Physiol. 2007 Jul 19;7:6.
43. Tentler JJ, etal., Endocrine 2003 Feb-Mar;20(1-2):3-12.
44. Villalobos C, etal., Endocrinology 2002 Sep;143(9):3548-54.
45. Vinicius Fagundes Donadio M, etal., Physiol Behav. 2007 May 22;.
46. Wei L, etal., Biochem Cell Biol. 2010 Aug;88(4):723-30. doi: 10.1139/O10-022.
47. Zhang FZ, etal., Zhongguo Yi Xue Ke Xue Yuan Xue Bao. 2006 Dec;28(6):822-7.
Additional References at PubMed
PMID:375200   PMID:728396   PMID:925136   PMID:1339346   PMID:8421089   PMID:9247267   PMID:9247268   PMID:11721692   PMID:11721698   PMID:11721700   PMID:11888852   PMID:12079879  
PMID:12111996   PMID:12121979   PMID:12147240   PMID:12388746   PMID:12456804   PMID:12477932   PMID:12552091   PMID:12618435   PMID:12624432   PMID:12668864   PMID:12668876   PMID:12668882  
PMID:12782310   PMID:12787053   PMID:12843210   PMID:12850283   PMID:12861340   PMID:12865345   PMID:14617575   PMID:14715716   PMID:14738911   PMID:15031321   PMID:15033917   PMID:15231872  
PMID:15245874   PMID:15256781   PMID:15308608   PMID:15358675   PMID:15456852   PMID:15471574   PMID:15545705   PMID:15710466   PMID:15731170   PMID:15774559   PMID:15796760   PMID:15834311  
PMID:16164646   PMID:16216912   PMID:16219686   PMID:16608881   PMID:16707016   PMID:16718624   PMID:16741141   PMID:17223721   PMID:17255200   PMID:17363453   PMID:17416971   PMID:17519522  
PMID:17556846   PMID:17706597   PMID:17728251   PMID:17785918   PMID:17850459   PMID:17911340   PMID:17933456   PMID:18006851   PMID:18198010   PMID:18420735   PMID:18425773   PMID:18632733  
PMID:18674865   PMID:18765257   PMID:18824214   PMID:18832099   PMID:18923888   PMID:19160411   PMID:19282380   PMID:19289102   PMID:19306435   PMID:19342445   PMID:19449156   PMID:19470835  
PMID:19481553   PMID:19590175   PMID:19769948   PMID:19945993   PMID:20130141   PMID:20170714   PMID:20215567   PMID:20570717   PMID:20722974   PMID:20960102   PMID:20970474   PMID:21187122  
PMID:21507896   PMID:21653876   PMID:21677274   PMID:21760910   PMID:21777304   PMID:21823059   PMID:21919974   PMID:21980073   PMID:22094470   PMID:22354782   PMID:22480423   PMID:22495675  
PMID:22573829   PMID:22674474   PMID:22843122   PMID:22891630   PMID:23071095   PMID:23619365   PMID:23641787   PMID:23904563   PMID:23908112   PMID:24075908   PMID:24456164   PMID:24530842  
PMID:24859278   PMID:24984282   PMID:25136563   PMID:25446202   PMID:25618592   PMID:25701231   PMID:25715833   PMID:26032630   PMID:26509893   PMID:26657069   PMID:26697363   PMID:26862561  
PMID:26874070   PMID:27021728   PMID:27356573   PMID:28361424   PMID:28686504   PMID:28710248   PMID:28988314   PMID:29921576  


Genomics

Comparative Map Data
Prl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21737,859,999 - 37,870,062 (-)NCBI
Rnor_6.0 Ensembl1739,814,244 - 39,824,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01739,814,236 - 39,824,299 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01741,720,751 - 41,730,813 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41744,699,101 - 44,709,162 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11744,701,945 - 44,712,003 (-)NCBI
Celera1737,551,071 - 37,561,021 (-)NCBICelera
Cytogenetic Map17p12NCBI
PRL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl622,287,244 - 22,302,826 (-)EnsemblGRCh38hg38GRCh38
GRCh38622,287,246 - 22,302,897 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37622,287,475 - 22,303,064 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36622,395,459 - 22,405,709 (-)NCBINCBI36hg18NCBI36
Build 34622,395,458 - 22,405,709NCBI
Celera623,520,776 - 23,536,391 (-)NCBI
Cytogenetic Map6p22.3NCBI
HuRef622,230,650 - 22,246,259 (-)NCBIHuRef
CHM1_1622,289,298 - 22,304,920 (-)NCBICHM1_1
Prl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391327,241,553 - 27,249,187 (+)NCBIGRCm39mm39
GRCm39 Ensembl1327,241,553 - 27,249,188 (+)Ensembl
GRCm381327,057,570 - 27,065,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1327,057,570 - 27,065,205 (+)EnsemblGRCm38mm10GRCm38
MGSCv371327,149,439 - 27,157,073 (+)NCBIGRCm37mm9NCBIm37
MGSCv361327,065,041 - 27,072,647 (+)NCBImm8
Celera1327,286,739 - 27,294,373 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map1312.25NCBI
Prl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554834,495,257 - 4,503,377 (+)NCBIChiLan1.0ChiLan1.0
PRL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1622,450,132 - 22,465,598 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl622,450,132 - 22,459,829 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0622,109,974 - 22,125,433 (-)NCBIMhudiblu_PPA_v0panPan3
PRL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3520,673,839 - 20,683,824 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13520,673,830 - 20,683,824 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Prl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365527,204,298 - 7,212,632 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl717,451,367 - 17,463,741 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1717,451,367 - 17,463,771 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2718,412,498 - 18,424,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRL
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11749,922,750 - 49,938,084 (+)NCBI
ChlSab1.1 Ensembl1749,928,321 - 49,938,631 (+)Ensembl
Prl
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247564,585,542 - 4,593,285 (+)NCBI

Position Markers
D17Wox11  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01739,825,473 - 39,825,612NCBIRnor6.0
Rnor_5.01741,731,987 - 41,732,126UniSTSRnor5.0
RGSC_v3.41744,710,335 - 44,710,475RGDRGSC3.4
RGSC_v3.41744,710,336 - 44,710,475UniSTSRGSC3.4
RGSC_v3.11744,713,176 - 44,713,316RGD
Celera1737,562,194 - 37,562,333UniSTS
RH 3.4 Map17419.5RGD
RH 3.4 Map17419.5UniSTS
RH 2.0 Map17305.9RGD
Cytogenetic Map17p12UniSTS
D17Wox18  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01739,825,395 - 39,825,626NCBIRnor6.0
Rnor_5.01741,731,909 - 41,732,140UniSTSRnor5.0
RGSC_v3.41744,710,258 - 44,710,489UniSTSRGSC3.4
Celera1737,562,116 - 37,562,347UniSTS
Cytogenetic Map17p12UniSTS
D17Arb10  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01739,825,889 - 39,826,122NCBIRnor6.0
Rnor_5.01741,732,403 - 41,732,636UniSTSRnor5.0
RGSC_v3.41744,710,751 - 44,710,985RGDRGSC3.4
RGSC_v3.41744,710,752 - 44,710,985UniSTSRGSC3.4
RGSC_v3.11744,713,592 - 44,713,826RGD
Celera1737,562,610 - 37,562,843UniSTS
SHRSP x BN Map1729.2799UniSTS
SHRSP x BN Map1729.2799RGD
Cytogenetic Map17p12UniSTS
D17Arb14  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01739,825,395 - 39,825,741NCBIRnor6.0
Rnor_5.01741,731,909 - 41,732,255UniSTSRnor5.0
RGSC_v3.41744,710,257 - 44,710,604RGDRGSC3.4
RGSC_v3.41744,710,258 - 44,710,604UniSTSRGSC3.4
RGSC_v3.11744,713,098 - 44,713,445RGD
Celera1737,562,116 - 37,562,462UniSTS
FHH x ACI Map1734.46UniSTS
FHH x ACI Map1734.46RGD
Cytogenetic Map17p12UniSTS
D17Hmgc1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01739,825,399 - 39,825,612NCBIRnor6.0
Rnor_5.01741,731,913 - 41,732,126UniSTSRnor5.0
RGSC_v3.41744,710,262 - 44,710,475UniSTSRGSC3.4
Celera1737,562,120 - 37,562,333UniSTS
RH 3.4 Map17420.3RGD
RH 3.4 Map17420.3UniSTS
Cytogenetic Map17p12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17163676140Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17173413148Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17173413148Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17333697263676140Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17333697273413148Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17333697273413148Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17333697273413148Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17519104750191047Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17519104750191047Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17982730454827304Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)171052970942542027Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171574375561036897Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171867614063676140Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171867614063676140Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172149095062195822Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172149095066490950Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172149095066490950Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172149095066490950Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172149095066490950Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172149095066490950Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172149095074823273Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172213681453475276Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172277506564946194Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172403061863676140Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172769095961794615Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172769095963994435Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172807358956207236Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172841314873413148Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173097522875975228Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173097522875975228Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173205588258468016Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173205588277922655Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173330362753475276Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173330362778303627Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173330362785321557Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173628324577922655Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173779030673413148Rat


Related Rat Strains
The following Strains have been annotated to Prl

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:90
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000023412
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system nervous system reproductive system
High
Medium
Low 7 1
Below cutoff 1 3 9

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF022934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF022935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LM644192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S46794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000023412   ⟹   ENSRNOP00000023412
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1739,814,244 - 39,824,299 (-)Ensembl
RefSeq Acc Id: NM_012629   ⟹   NP_036761
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21737,860,001 - 37,870,062 (-)NCBI
Rnor_6.01739,814,238 - 39,824,299 (-)NCBI
Rnor_5.01741,720,751 - 41,730,813 (-)NCBI
RGSC_v3.41744,699,101 - 44,709,162 (-)RGD
Celera1737,551,071 - 37,561,021 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253912   ⟹   XP_006253974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21737,859,999 - 37,869,957 (-)NCBI
Rnor_6.01739,814,236 - 39,824,194 (-)NCBI
Rnor_5.01741,720,751 - 41,730,813 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_036761   ⟸   NM_012629
- Peptide Label: precursor
- UniProtKB: P01237 (UniProtKB/Swiss-Prot),   B5DEM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253974   ⟸   XM_006253912
- Peptide Label: isoform X1
- UniProtKB: B2RYT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000023412   ⟸   ENSRNOT00000023412

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700436
Promoter ID:EPDNEW_R10960
Type:single initiation site
Name:Prl_1
Description:prolactin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01739,824,167 - 39,824,227EPDNEW
RGD ID:6850020
Promoter ID:EP11124
Type:single initiation site
Name:RN_PRL
Description:Prolactin, PRL gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 43; Mammalian prolactin
Tissues & Cell Lines:pituitary
Experiment Methods:Nuclease protection with homologous sequence ladder; Primer extension; RNA Pol II in vitro system; Sequencing of a full-length cDNA; experiments performed with; closely related gene
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.41744,709,033 - 44,709,093EPD

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3403 AgrOrtholog
Ensembl Genes ENSRNOG00000017374 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000023412 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023412 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6889929 IMAGE-MGC_LOAD
  IMAGE:6919622 IMAGE-MGC_LOAD
InterPro 4_helix_cytokine-like_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Somatotropin/Prolactin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Somatotropin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24683 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:188843 IMAGE-MGC_LOAD
  MGC:72844 IMAGE-MGC_LOAD
NCBI Gene 24683 ENTREZGENE
PANTHER PTHR11417 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hormone_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Prl PhenoGen
PRINTS SOMATOTROPIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SOMATOTROPIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOMATOTROPIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RYT1 ENTREZGENE, UniProtKB/TrEMBL
  B5DEM6 ENTREZGENE, UniProtKB/TrEMBL
  P01237 ENTREZGENE, UniProtKB/Swiss-Prot
  Q58AV0_RAT UniProtKB/TrEMBL
UniProt Secondary P70520 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Prl  prolactin      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_drugs expression is induced by pimozide (a dopamine antagonist) and inhibited by alpha-ergocryptine (a dopamine agonist) 1358952
gene_expression expressed in the uterine stromal cell line (UIII) 625674
gene_pathway may mediate Jak2/Stat5 pathway and up-regulate genes involved in decidual growth and placentation 625674
gene_process promotes lactation on the mammary gland 70433
gene_regulation TRH (a prototypic stimulator) along with intracellular calcium increases the secretion and expression 625674
gene_regulation expression in GH4C1 pituitary tumor cells is induced by epidermal growth factor (EGF), thyrotropin-releasing hormone, 12-O-tetradecanoylphorbol 13-acetate, forskolin and dibutyrul cAMP 1358950
gene_regulation expression may be regulated from two different promoters 1358951
gene_regulation expression induction by estrogen may be mediated via dopamine release 1358952