Aia11 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Aia11 (Adjuvant induced arthritis QTL 11) Rattus norvegicus

Symbol: Aia11
Name: Adjuvant induced arthritis QTL 11
RGD ID: 2317045
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: left rear ankle joint diameter   (CMO:0002149)    
LOD Score: 4.06
P Value: Not Available
Variance: 11.5
Inheritance Type: dominant
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,781,426 - 86,533,673RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01763,675,975 - 70,261,772RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01765,440,692 - 71,966,023RGDRnor5.0
RGSC_v3.41771,569,891 - 77,806,121RGDRGSC3.4
Cross Type: intercross
Strains Crossed: F344/NCrl LEW/Crl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/NCrl  (IEA)
LEW/Crl  (IEA)

References

References - curated
1. Bleich A, etal., Inflamm Bowel Dis. 2009 Jun 12;15(12):1794-1802.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
619776Pfkfb36-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3176698362967064702Rat
61313Pterphosphotriesterase related177605838876119633Rat
61802Gdi2GDP dissociation inhibitor 2176664961666676299Rat
62389Klf6Kruppel-like factor 6176453945664548451Rat
61893Pfkpphosphofructokinase, platelet176372974363794021Rat
621008Abi1abl-interactor 1178509883785179829Rat
3178Nid1nidogen 1178608504686158277Rat
68347Celf2CUGBP, Elav-like family member 2177090446271729072Rat
620317Phyhphytanoyl-CoA 2-hydroxylase177332946173346359Rat
621634Itga8integrin subunit alpha 8177530400475501510Rat
621709Ptf1apancreas associated transcription factor 1a178205128182053135Rat
620968Prkcqprotein kinase C, theta176724639467379049Rat
2653Gad2glutamate decarboxylase 2178476363084826155Rat
620011Atp5f1cATP synthase F1 subunit gamma176842392768446169Rat
619766Cdc123cell division cycle 123177245929672502948Rat
620764Yme1l1YME1-like 1 ATPase178528760785326068Rat
620783Gtpbp4GTP binding protein 4176130803361328184Rat
621115Olaholeoyl-ACP hydrolase177487765174902517Rat
628886Optnoptineurin177320957273260251Rat
708550Prpf18pre-mRNA processing factor 18177363056073661210Rat
68355Cubncubilin177638504676593133Rat
67385Cacnb2calcium voltage-gated channel auxiliary subunit beta 2177756463077910000Rat
620806Gng4G protein subunit gamma 4178644870886497560Rat
1307342Gpr137bG protein-coupled receptor 137B178600363086041841Rat
621708Pip4k2aphosphatidylinositol-5-phosphate 4-kinase type 2 alpha178149666981668180Rat
708361Akr1c14aldo-keto reductase family 1, member C14176615628666173277Rat
2895Il2rainterleukin 2 receptor subunit alpha176684997466898665Rat
621835Idi1isopentenyl-diphosphate delta isomerase 1176162959261637357Rat
621837Lystlysosomal trafficking regulator178624138486443501Rat
621250Gata3GATA binding protein 3176864376068666000Rat
708428Akr1c3aldo-keto reductase family 1, member C3176611097066127867Rat
1305569Arl5bADP-ribosylation factor like GTPase 5B177795574977983745Rat
708574Dclre1cDNA cross-link repair 1C177477582874810089Rat
1305149Il15rainterleukin 15 receptor subunit alpha176680230066831973Rat
1306026Msrb2methionine sulfoxide reductase B2178197437882000044Rat
1307514Akr1c15aldo-keto reductase family 1, member C15176618149366208090Rat
1304795Apbb1ipamyloid beta precursor protein binding family B member 1 interacting protein178494140485033020Rat
1305616Spag6sperm associated antigen 6178135237281401504Rat
1306292Trdmt1tRNA aspartic acid methyltransferase 1177660196676646104Rat
1307600Cdnfcerebral dopamine neurotrophic factor177471456474728639Rat
1305841Gpr158G protein-coupled receptor 158178377762584244428Rat
1305027Sfmbt2Scm-like with four mbt domains 2176793429668128905Rat
1307403Bmi1BMI1 proto-oncogene, polycomb ring finger178133217581341625Rat
1305898Bend7BEN domain containing 7177348321273566221Rat
1306298Fbh1F-box DNA helicase 1176674950666787590Rat
621646Vimvimentin177666870176677186Rat
1305034Net1neuroepithelial cell transforming 1176634125166370445Rat
1310177Prtfdc1phosphoribosyl transferase domain containing 1178354879283654852Rat
1359406Akr1c12aldo-keto reductase family 1, member C12176604537666061496Rat
1308315Neblnebulette178011389180466331Rat
1311330Mcm10minichromosome maintenance 10 replication initiation factor177326378873288346Rat
1310713Larp4bLa ribonucleoprotein 4B176113870961217423Rat
1310874Mllt10MLLT10, histone lysine methyltransferase DOT1L cofactor178082187080949349Rat
1310998Pitrm1pitrilysin metallopeptidase 1176379567063827313Rat
1308232Akr1c13aldo-keto reductase family 1, member C13176596418665997598Rat
735116Commd3COMM domain containing 3178132745181331183Rat
1303175Nmt2N-myristoyltransferase 2177491783374964788Rat
1311786Usp6nlUSP6 N-terminal like177182843371956878Rat
1309050Frmd4aFERM domain containing 4A177366778774258487Rat
1311028Arhgap21Rho GTPase activating protein 21178334867383472202Rat
1305499Calml3calmodulin-like 3176641984466423083Rat
1309305Slc39a12solute carrier family 39 member 12177735376177440381Rat
1306969Suv39h2SUV39H2 histone lysine methyltransferase177475629074775332Rat
1305962Plxdc2plexin domain containing 2177916923879594279Rat
1308092Dhtkd1dehydrogenase E1 and transketolase domain containing 1177235520172406725Rat
1309178Upf2UPF2, regulator of nonsense mediated mRNA decay177222457572335896Rat
1309839Enkurenkurin, TRPC channel interacting protein178369010583714756Rat
1309353Mrc1mannose receptor, C type 1177724918777330857Rat
1306189Wdr37WD repeat domain 37176163725861703664Rat
1305948Sec61a2SEC61 translocon subunit alpha 2177240757472445630Rat
1309599Akr1e2aldo-keto reductase family 1, member E2176573590965750441Rat
1309605Mindy3MINDY lysine 48 deubiquitinase 3177554528675623884Rat
1308454PotecPOTE ankyrin domain family, member C178534506885449429Rat
1311405Ankrd16ankyrin repeat domain 16176673532566748533Rat
1309411Acbd5acyl-CoA binding domain containing 5178520617885248909Rat
1309186Mastlmicrotubule associated serine/threonine kinase-like178525051285287479Rat
1305289Tubal3tubulin, alpha-like 3176632373366332423Rat
1309535Nsun6NOP2/Sun RNA methyltransferase 6177791237477955694Rat
1308977Ucmaupper zone of growth plate and cartilage matrix associated177329397773303728Rat
1310047Calml5calmodulin-like 5176639443366395390Rat
1307474Rpp38ribonuclease P/MRP subunit p38177491406674917742Rat
1310387Asb13ankyrin repeat and SOCS box-containing 13176656465366583365Rat
1306847Akr1c1aldo-keto reductase family 1, member C1176581047465837385Rat
1311208Rbm17RNA binding motif protein 17176693714066954034Rat
1564999RGD1564999similar to isopentenyl-diphosphate delta isomerase 2176151813861535484Rat
1562954Akr1c19aldo-keto reductase family 1, member C19176600135866027226Rat
1564347RGD1564347similar to isopentenyl diphosphate delta-isomerase type 2176137285361386459Rat
1563344Otud1OTU deubiquitinase 1178225988182262774Rat
1561482Fam107bfamily with sequence similarity 107, member B177447860874685027Rat
1564010EdaraddEDAR-associated death domain178586662985910612Rat
1564456Tasor2transcription activation suppressor family member 2176658355466650127Rat
1564088Rpl29-ps3ribosomal protein L29, pseudogene 3176655246866553027Rat
1564213Thnsl1threonine synthase-like 1178371479483722190Rat
1311841Akr1c2aldo-keto reductase family 1, member C2176575977865808013Rat
1559604Akr1c12l1aldo-keto reductase family 1, member C12-like 1176593783465948344Rat
1564164Acbd7acyl-CoA binding domain containing 7177490393674909977Rat
1561231RGD1561231similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1)178578924285807842Rat
1564865RGD1564865similar to 20-alpha-hydroxysteroid dehydrogenase176584758065881488Rat
1559783Idi2isopentenyl-diphosphate delta isomerase 2176133166961334285Rat
1559473Ccdc3coiled-coil domain containing 3177303189173135173Rat
1311182Sephs1selenophosphate synthetase 1177335443573382803Rat
1303161St8sia6ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6177674075576883766Rat
1303296Hspa14heat shock protein family A (Hsp70) member 14177472894574749730Rat
621519Adarb2adenosine deaminase, RNA-specific, B2176175043762300984Rat
1560083Myo3amyosin IIIA178455478584604748Rat
1565426Itih2inter-alpha-trypsin inhibitor heavy chain 2176837551868411849Rat
1563548Ero1bendoplasmic reticulum oxidoreductase 1 beta178586108686003244Rat
1586830Proser2proline and serine rich 2177215196172187524Rat
1564499Stamsignal transducing adaptor molecule177712023577166173Rat
1583655Meig1meiosis/spermiogenesis associated 1177481079174828433Rat
1560155Dip2cdisco-interacting protein 2 homolog C176064734661032467Rat
1562213Ucn3urocortin 3176630995266315571Rat
1582824LOC690290similar to Saccharomyces cerevisiae Nip7p homolog176652539566526387Rat
1359284Nudt5nudix hydrolase 5177243569072459008Rat
1563437Etl4enhancer trap locus 4178284107583304868Rat
1564416RGD1564416similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein (Topoisomerase-inhibitor suppressed)176744541467446386Rat
1560691Camk1dcalcium/calmodulin-dependent protein kinase ID177258189972982704Rat
1589380LOC680696hypothetical protein LOC680696178052668180527538Rat
1589147Echdc3enoyl CoA hydratase domain containing 3177207069772093519Rat
1590637Tmem236transmembrane protein 236177718091977241258Rat
1566369RGD1566369similar to ribosomal protein S8178375936083760027Rat
1589704LOC364772similar to Voltage-dependent anion-selective channel protein 1 (VDAC-1) (mVDAC1) (mVDAC5) (Outer mitochondrial membrane protein porin 1) (Plasmalemmal porin)176595464865959462Rat
1589705LOC364770similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1176408583764087092Rat
1589706LOC364768similar to zinc finger, ZZ domain containing 3176387960163881399Rat
1589707LOC364767similar to minichromosome maintenance protein 7176366263563666781Rat
1589708LOC364765similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)176149758161498918Rat
1585155Moap1-ps1modulator of apoptosis 1, pseudogene 1176338020763381740Rat
1588196Skida1SKI/DACH domain containing 1178079824180809062Rat
1595454Rpl34-ps1ribosomal protein L34, pseudogene 1177487470674875132Rat
1596107KinKin17 DNA and RNA binding protein176841348368431392Rat
1594172Fam171a1family with sequence similarity 171, member A1177502458275148348Rat
1595507Hacd13-hydroxyacyl-CoA dehydratase 1177708150877106114Rat
1591781Rsu1Ras suppressor protein 1177612877476377515Rat
1591795C1ql3complement C1q like 3177612183276128327Rat
1591485Itih5inter-alpha-trypsin inhibitor heavy chain 5176824811568352216Rat
1598031LOC681241hypothetical protein LOC681241178206246182174401Rat
1598362LOC291276similar to isopentenyl diphosphate delta-isomerase type 2176154933561553178Rat
1595871LOC307084similar to heat shock protein 8176409395964095858Rat
1642516LOC100125598metallothionein 1a pseudogene177478665274787040Rat
2319961Armc3armadillo repeat containing 3178181408781917534Rat
2319976Pdss1decaprenyl diphosphate synthase subunit 1178505995385098739Rat
2320114LOC100361451hypothetical LOC100361451178178888781839561Rat
2319552LOC100361722nucleophosmin 1177078474070785697Rat
2319016LOC100365464small nuclear ribonucleoprotein polypeptide E-like177089991670900190Rat
2322079LOC100360477hypothetical protein LOC100360477176147703761483516Rat
2322144Dnajc1DnaJ heat shock protein family (Hsp40) member C1178095520981112025Rat
2320868Malrd1MAM and LDL receptor class A domain containing 1177841881979131016Rat
2320914LOC100361046casein kinase 1, alpha 1-like177826727878267954Rat
2321902LOC100360555Fth1 protein-like176785430467855385Rat
2321948LOC100360509protein arginine methyltransferase 1-like176762545467626376Rat
2325483Mir511microRNA 511177727941577279493Rat
4888560Mir466dmicroRNA 466d176800326768003359Rat
2324594Taf3TATA-box binding protein associated factor 3176845538968608367Rat
2325073LOC100359655elongin B-like176220896662209274Rat
6489760LOC100911936uncharacterized LOC100911936176156873761578142Rat
6488061LOC100912261protein FAM64A-like178186420781868932Rat
6486636LOC100912486ATP synthase subunit gamma, mitochondrial-like176758833167588976Rat
6497110LOC100910738ATP synthase subunit g, mitochondrial-like176363638763636687Rat
7519062LOC10255333326S protease regulatory subunit 10B-like176693180566937314Rat
7525245LOC102550536uncharacterized LOC102550536177658271976584183Rat
7526492LOC102549174ankyrin repeat domain-containing protein 26-like178547606485632315Rat
7541008LOC102551575isopentenyl-diphosphate delta-isomerase 2-like176150429461507015Rat
7541609LOC102546431uncharacterized LOC102546431176844292268457029Rat
7532113LOC102552793uncharacterized LOC102552793176742484467433157Rat
7534125LOC102550154uncharacterized LOC102550154178350073583512213Rat
7646455LOC102552293uncharacterized LOC102552293176194057461982314Rat
7560065LOC102554589uncharacterized LOC102554589176489554064905757Rat
7640129LOC102547897uncharacterized LOC102547897177473049874736614Rat
7656762LOC102547255uncharacterized LOC102547255177129575871309918Rat
7617990LOC102552003uncharacterized LOC102552003176138493861387088Rat
7578249LOC102552867uncharacterized LOC102552867176768083067715001Rat
7552804LOC102556079uncharacterized LOC102556079178195329481965306Rat
7553956LOC102554145uncharacterized LOC102554145178144695281463260Rat
7735814LOC102550221uncharacterized LOC102550221178366147183684463Rat
7751577LOC102546763uncharacterized LOC102546763176926251069321716Rat
7693725LOC102551026uncharacterized LOC102551026177252156572528731Rat
7693888LOC102553115uncharacterized LOC102553115178061876480641022Rat
7723752LOC102554651uncharacterized LOC102554651177425872074261283Rat
7686967LOC102554523uncharacterized LOC102554523176483146264865907Rat
7725861LOC102549062uncharacterized LOC102549062178403031184034334Rat
7740538LOC102550988isopentenyl-diphosphate delta-isomerase 2-like176145192061457799Rat
7666974LOC102551092uncharacterized LOC102551092177255979372562834Rat
7745365LOC102546657uncharacterized LOC102546657176895481068996252Rat
7746419LOC102555562uncharacterized LOC102555562177600056976003218Rat
7727712LOC102548534uncharacterized LOC102548534177586838275954711Rat
9187604LOC103694135uncharacterized LOC103694135177552647575557758Rat
9155296LOC10369415560S ribosomal protein L29-like178124276381243083Rat
9206913LOC103694128small EDRK-rich factor 2 pseudogene177198121171981386Rat
9084032LOC103694151cytochrome c oxidase subunit 6B1 pseudogene177235414272355238Rat
9352023LOC103694120isopentenyl-diphosphate delta-isomerase 2-like176142035761423924Rat
9378476LOC103690178nucleolar GTP-binding protein 1-like176140456161417990Rat
9362362LOC10369411660S ribosomal protein L22 pseudogene176108489261085261Rat
9381442LOC103694139heterogeneous nuclear ribonucleoprotein A3 pseudogene178182550681826541Rat
9467585LOC10369415660S ribosomal protein L36 pseudogene178173973381752860Rat
9474191LOC103694125uncharacterized LOC103694125176639104866393245Rat
9410960LOC103694152cyclin-dependent kinases regulatory subunit 2 pseudogene177357977273598021Rat
9685628Mir466cmicroRNA 466c176801786468017942Rat
11360801LOC108353137uncharacterized LOC108353137178078547380803132Rat
11442890LOC108353138sperm motility kinase X-like178575618985762026Rat
11471276LOC108348589uncharacterized LOC108348589177296402572998728Rat
11474069LOC108348592uncharacterized LOC108348592177458147374586792Rat
11369392LOC108348618uncharacterized LOC108348618177604398076055239Rat
11370860LOC10834859960S ribosomal protein L23a pseudogene178370564683714107Rat
11439047LOC108348486uncharacterized LOC108348486176715064967154089Rat
11365371LOC10834848940S ribosomal protein S26-like178518226685182718Rat
11394977LOC108348617protein transport protein Sec61 subunit gamma pseudogene177563844975638655Rat
11406958LOC108348582uncharacterized LOC108348582176401660964037489Rat
11407481LOC108348625uncharacterized LOC108348625178242284582430429Rat
11375075LOC108348596uncharacterized LOC108348596178105294581056216Rat
11389928LOC108348587uncharacterized LOC108348587177174963471753741Rat
11401537LOC108348616uncharacterized LOC108348616176571556665723420Rat
11478102LOC108348591F-box/LRR-repeat protein 14-like177365727373659619Rat
11502719LOC108348590uncharacterized LOC108348590177315579173158095Rat
11508771LOC10834860140S ribosomal protein S19 pseudogene178475470484755185Rat
11483937Trnan-guu13transfer RNA asparagine (anticodon GUU) 13178124993081250003Rat
11485055LOC108348614uncharacterized LOC108348614176329355663296453Rat
11517690LOC108348487nuclear cap-binding protein subunit 2 pseudogene176761583867621169Rat
41380062LOC120097894uncharacterized LOC120097894177397490173981948Rat
41085852LOC120097771sperm motility kinase X-like178584512285850794Rat
41205386LOC120098030U4 spliceosomal RNA176990167369901783Rat
41089623LOC120097841uncharacterized LOC120097841178391695583918970Rat
41384659LOC120097743NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-like178311012483123306Rat
41360715LOC120097741uncharacterized LOC120097741176768061267766669Rat
41387287LOC120098047U6 spliceosomal RNA176700865167008754Rat
41116272LOC120098055U6 spliceosomal RNA177095262870952728Rat
41145682LOC120097880uncharacterized LOC120097880177460550974623485Rat
41173721LOC120093110sperm motility kinase X-like178566833385679172Rat
41328538LOC120097783myosin-IIIa-like178471929284748492Rat
41260975LOC120097910uncharacterized LOC120097910176815475868158084Rat
41363710LOC120098005small nucleolar RNA SNORA17176467024664670368Rat
41389710LOC120097878uncharacterized LOC120097878177483554374849584Rat
41096094LOC120097900uncharacterized LOC120097900176996062769985753Rat
41189467LOC120097896uncharacterized LOC120097896177407919274091043Rat
41264459LOC120097778uncharacterized LOC120097778176897314669007426Rat
41155374LOC120097737uncharacterized LOC120097737176620708866215750Rat
41155484LOC12009776510 kDa heat shock protein, mitochondrial-like176369272063713407Rat
41193472LOC120097862uncharacterized LOC120097862176672547766727913Rat
41288383LOC120097992small nucleolar RNA SNORA17178421861484218736Rat
41195185LOC120097961uncharacterized LOC120097961178572545285753772Rat
41218517LOC120097766solute carrier family 23 member 2-like176607559066082748Rat
41291069LOC120097847uncharacterized LOC120097847178146377181468391Rat
41184525LOC120097849uncharacterized LOC120097849176835628368360010Rat
41219403LOC1200979291,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like176098927360989828Rat
41373662LOC120097897uncharacterized LOC120097897177412528774128014Rat
41399030LOC120097989small nucleolar RNA SNORA17177845383778453970Rat
41105207LOC120097756uncharacterized LOC120097756176714395667148274Rat
41161195LOC120097883uncharacterized LOC120097883178126725581268961Rat
41186790LOC120097832uncharacterized LOC120097832176650409166507987Rat
41197066LOC120097751uncharacterized LOC120097751178582454085842343Rat
41271402LOC120097745uncharacterized LOC120097745178314267983146931Rat
41401159LOC120097888actin-related protein 2/3 complex subunit 5-like176683672066837695Rat
41197928LOC120098053U6 spliceosomal RNA178279131182791404Rat
41108069LOC120097930glyceraldehyde-3-phosphate dehydrogenase-like178312496183130455Rat
41200047LOC120097925uncharacterized LOC120097925176494795064970825Rat
41352910LOC120098007small nucleolar RNA SNORA17178229376182293861Rat
41353002NEWGENE_41310478transfer RNA alanine (anticodon CGC)177782179777821869Rat
41403456LOC120097922uncharacterized LOC120097922177092649670934280Rat
41403884LOC120098003U2 spliceosomal RNA178468413684684292Rat
41202623LOC120097970U7 small nuclear RNA177568080275680865Rat
40997098LOC120097918uncharacterized LOC120097918176941217069418345Rat
41015985LOC120097873isopentenyl-diphosphate delta-isomerase 2-like176160125461608261Rat
41339945LOC120097764isopentenyl-diphosphate delta-isomerase 2-like176133862261349795Rat
40950915LOC120097951uncharacterized LOC120097951176823747168242527Rat
41341161LOC120097755serine/arginine-rich splicing factor 3-like176575656765759644Rat
40953259LOC120097958uncharacterized LOC120097958177539144475396471Rat
41014789LOC120098050U6 spliceosomal RNA177191544671915547Rat
40957286LOC120097881uncharacterized LOC120097881177474429974747340Rat
40981689LOC120098027U4 spliceosomal RNA177495361474953754Rat
40982159LOC120097986small nucleolar RNA SNORA48178409438384094522Rat
40959177LOC120097903elongation factor 1-gamma-like176155698761562152Rat
40936831LOC120097916uncharacterized LOC120097916177334795573356920Rat
41009648LOC120098039U6 spliceosomal RNA177882737578827481Rat
40940378LOC120097971U7 small nuclear RNA177551964375519707Rat
40967226LOC120097887uncharacterized LOC120097887176367751663690603Rat
41242720LOC120097870uncharacterized LOC120097870176124753661263382Rat
41048340LOC120097919uncharacterized LOC120097919176555315765559311Rat
41049176LOC120097994small nucleolar RNA SNORA17176968051769680648Rat
41312831LOC120097798uncharacterized LOC120097798176668645566688084Rat
41025585LOC120097962uncharacterized LOC120097962178575233685756188Rat
41028409LOC120097770sperm motility kinase X-like178571633185722901Rat
41134540LOC120097974small nucleolar RNA SNORA68176753442767534557Rat
41143387LOC120098018U2 spliceosomal RNA177774839777748583Rat
41056436LOC120097882uncharacterized LOC120097882178116188281166210Rat
41336264LOC120097963uncharacterized LOC120097963178577918085791012Rat
41220445LOC120097984small nucleolar RNA SNORA48176469517764695319Rat
41220916LOC120097869uncharacterized LOC120097869178499397584998276Rat
41057970LOC120097860uncharacterized LOC120097860176557138565573214Rat
41222033LOC12009774460S ribosomal protein L37-like178265350782654862Rat
41298822LOC120097902uncharacterized LOC120097902176671331566716474Rat
41299169LOC120097893uncharacterized LOC120097893177372224873725978Rat
41060155LOC120097767ATP-dependent RNA helicase DDX39A-like178114101381159511Rat
41060414LOC120097950uncharacterized LOC120097950176826388568273069Rat
41224909LOC120097843uncharacterized LOC120097843176863732268641249Rat
41301616LOC120097769tubulin alpha-3 chain-like178256185282624501Rat
41334992LOC120097734uncharacterized LOC120097734177955050879556690Rat
41303092LOC120097988small nucleolar RNA SNORA17176842872368428851Rat
41019549LOC100169746uncharacterized LOC100169746177827830378284818Rat
41020367LOC120097811ras GTPase-activating protein-binding protein 1-like178226792182282303Rat
41239690LOC120097879uncharacterized LOC120097879177466319074672471Rat
41044963LOC120098044U6 spliceosomal RNA176557634565576451Rat
41240389LOC120097895uncharacterized LOC120097895177371619473736993Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10490D5Uwm5173177589418175894750Ratregion
33939D17Mit11150177806876478068910Ratregion
34391D17Mgh9148176811706768117215Ratregion
33707D17Mit5287177085256570852846Ratregion
36211D17Rat34172176227078862270949Ratregion
36315D17Rat41175176883571268835887Ratregion
37234D17Rat97234176210933362109574Ratregion
37352D17Rat85223178107631681076517Ratregion
37404D17Rat82199176877890768779104Ratregion
35258D17Rat36188176364000963640182Ratregion
35274D17Rat45126177100332571003451Ratregion
35473D17Rat58143176959919769599340Ratregion
36844D17Rat48168177750219477502357Ratregion
37048D17Rat50140178603864386038777Ratregion
37068D17Rat42140177121497771215120Ratregion
37926D17Rat62143177242009472420215Ratregion
36392D17Mgh12177604425876044398Ratregion
36526D17Rat46131177254020672540337Ratregion
36783D17Rat172126176759541267595534Ratregion
34989D17Rat39154176570358065703715Ratregion
35136D17Rat37164176475909664759263Ratregion
35585D17Rat151166176078142660781592Ratregion
35687D17Rat47126177395089573951021Ratregion
35687D17Rat47126177395087173951021Ratregion
35707D17Rat43147177106086271061009Ratregion
35719D17Rat51131178511945085119583Ratregion
35735D17Rat49163178120815481208315Ratregion
35827D17Rat52157178115374281153923Ratregion
35883D17Rat44141177015677770156904Ratregion
35893D17Rat38158176355506163555219Ratregion
39692D17Rat139133176880741568807548Ratregion
39786D17Rat129165176869929768699464Ratregion
37998D17Rat96205176704777767047980Ratregion
38092D17Rat95239178602217186022412Ratregion
40288D17Rat140170178603080886030978Ratregion
40316D17Rat124128176117751661177650Ratregion
38894D17Rat60239177711288277113120Ratregion
39318D17Rat65226178247946182479847Ratregion
39432D17Rat130210177048107670481278Ratregion
39488D17Rat127244176455464964554895Ratregion
39566D17Rat126246176419468864194936Ratregion
41226D17Rat132372178627880486279167Ratregion
41510D17Rat128146176405521464055360Ratregion
42419D17Rat180249177145068271450924Ratregion
41084D17Rat131201178190326481903471Ratregion
41762D17Rat154200178129271181292925Ratregion
43101D17Rat152229176855090968551143Ratregion
43102D17Rat153228176961631469616542Ratregion
43103D17Rat176226178179470381794915Ratregion
43105D17Rat173493178025196780252477Ratregion
43106D17Rat175228178122939081229592Ratregion
43107D17Rat177233178208681382087027Ratregion
45487D17Hmgc2202176108840561088605Ratregion
45488D17Got80171176348992063490091Ratregion
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45513D17Got112195178091093480911129Ratregion
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45517D17Got104208178340181383402199Ratregion
45517D17Got104208178340181383402021Ratregion
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60135D17Got105209178246804482468250Ratregion
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67819D17Uwm2264177236590772366191Ratregion
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67260D17Arb12297177790769977907996Ratregion
1556754D17Chm14199176878393768784138Ratregion
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1631795D17Got216106176103579161035895Ratregion
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1633898D17Got213169177096213170962300Ratregion
7192418VIM170177667280576673055Ratregion
7206732MARC_4455-4456:966894277:1115176370976963709885Ratregion
5036037Ptf1a0178205225982052681Ratregion
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5030345BF402956144177151835671518500Ratregion
5025186RH127345183178509916585099348Ratregion
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5033191RH137920240177493867174938910Ratregion
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5033465RH138936137177172813271728269Ratregion
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5028129D11Mit209115177189982371899938Ratregion
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5503174ksks283325177476681774767142Ratregion
5503716SEPHS1_9288834177335712773357961Ratregion
5504536PMC290270P1334178532216485322498Ratregion
5504338D11S3020208177399021473990422Ratregion
5504805Hrmt1l2212176762614767626358Ratregion
5505774UniSTS:4930721679176674681366748492Ratregion
5506334MARC_50801-50802:1130354928:1218177550049775500715Ratregion
5506833G46301184176368764763687831Ratregion
5507041fb22g09.x1919176685866666859585Ratregion
5500467RH126944471178601112086011591Ratregion
5502080MARC_31619-31620:1062167711:1172177667459876675170Ratregion
5500360GDB:315925159178122333381224185Ratregion
5500725RH69943185178173980481739989Ratregion
5503394VIM128177667281476673022Ratregion
5501365G15938233177790774577907978Ratregion
5501568RH3672477177335720673357283Ratregion
5502120MARC_5003-5004:996690032:1176176844133968442557Ratregion
5502385RH124704380177638514376385523Ratregion
5506907G47699239176249047262490711Ratregion
5502529RH125200126176454212064542245Ratregion
Position Markers

Flank 1: (D17Rat151)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,781,426 - 60,781,592 (-)MAPPER
Rnor_6.01763,675,975 - 63,676,140NCBI
Rnor_5.01765,440,692 - 65,440,857UniSTS
RGSC_v3.41771,569,891 - 71,570,057RGD
RGSC_v3.41771,569,892 - 71,570,057UniSTS
RGSC_v3.11771,580,725 - 71,580,890RGD
RH 3.4 Map17587.2RGD
RH 3.4 Map17587.2UniSTS
RH 2.0 Map17499.9RGD
SHRSP x BN Map1732.6599RGD
Cytogenetic Map17q12.1UniSTS
Flank 2: (D17Rat89)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01770,261,543 - 70,261,772NCBI
Rnor_5.01771,965,794 - 71,966,023UniSTS
RGSC_v3.41777,805,847 - 77,806,073UniSTS
RGSC_v3.41777,805,813 - 77,806,121RGD
RGSC_v3.11777,816,680 - 77,816,906RGD
Celera1766,117,184 - 66,117,410UniSTS
RH 3.4 Map17636.49RGD
RH 3.4 Map17636.49UniSTS
RH 2.0 Map17564.5RGD
SHRSP x BN Map1737.1799RGD
Cytogenetic Map17q12.3UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)174207316069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)175090919660781426Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)175724672370156904Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)175724672370852846Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)175900564977910000Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
1300131Bp193Blood pressure QTL 1933.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176364000973951021Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176570358081153923Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)177100332581153923Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)177177462182479847Rat
1581509Cm57Cardiac mass QTL 574.50.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)178115392381208154Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general software used: MapQTL software, Student's t-tests, median tests 2316974
qtl_general number of animals used: 168 F2 females 2316974
qtl_general measurement method: animals were anesthetized, intestines exposed and 0.05 mL PG-PS suspension was injected; after 24 days these animals were exsanguinated and joint diameter of the left rear ankle measured on 17th day of the treatment 2316974
qtl_general inducing agent: peptidoglycan-polysaccharide (PG-PS) polymers 2316974
qtl_general on day 24 LOD=3.68 and on day 24 LOD of both the ankles was 3.49 2316974