Cm55 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cm55 (Cardiac mass QTL 55) Rattus norvegicus

Symbol: Cm55
Name: Cardiac mass QTL 55
RGD ID: 1581512
Previously known as: Lvm9
Trait: heart left ventricle mass   (VT:0007031)    
Measurement Type: heart left ventricle weight to body weight ratio   (CMO:0000530)    
LOD Score: 2.8
P Value: 0.05
Variance: 5.0
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81727,233,445 - 83,975,845RGD_MAPPER_PIPELINE
mRatBN7.21727,027,949 - 56,836,890RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01727,690,959 - 61,794,615RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01729,605,177 - 63,569,326RGDRnor5.0
RGSC_v3.41733,277,173 - 65,478,569RGDRGSC3.4
RGSC_v3.11733,280,173 - 65,489,194RGD
Cross Type: Not Available
Strains Crossed: WKY/Cfd WKHA/Cfd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm55Ratheart left ventricle weight to body weight ratio  IDA 1578726 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm55Ratcontrol condition  IDA 1578726 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm55Ratpost excision weight measurement  IDA 1578726 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm55RatWKHA/Cfd  IEA 1578726 RGD 
Cm55RatWKY/Cfd  IEA 1578726 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm55Ratheart left ventricle mass  IDA 1578726 RGD 


#
Reference Title
Reference Citation
1. Distinct QTLs are linked to cardiac left ventricular mass in a sex-specific manner in a normotensive inbred rat inter-cross. Llamas B, etal., Mamm Genome. 2005 Sep;16(9):700-11. Epub 2005 Oct 20.


1 to 20 of 492 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1563601Tpi1l2triosephosphate isomerase 1 like 2172710143127102823Rat
6500583LOC100909970uncharacterized LOC100909970172717681727186106Rat
41022734LOC120097830uncharacterized LOC120097830172720362027213382Rat
41115616LOC120097899uncharacterized LOC120097899172724529327253746Rat
7584662LOC102549751uncharacterized LOC102549751172730850727321615Rat
40988637LOC120098041U1 spliceosomal RNA172733777527337940Rat
41289478LOC120097796uncharacterized LOC120097796172734273527349500Rat
6497764LOC100910628uncharacterized LOC100910628172734624427350547Rat
1309936Ly86lymphocyte antigen 86172741580727499695Rat
621495F13a1coagulation factor XIII A1 chain172781572327992494Rat
1564781Eno1-ps13enolase 1, pseudogene 13172802393328025229Rat
40976926LOC120097828uncharacterized LOC120097828172804854328051080Rat
621586Nrn1neuritin 1172812996928138898Rat
41223489LOC120097730uncharacterized LOC120097730172813469328137678Rat
41034711LOC120097996small nucleolar RNA SNORA17172820150128201626Rat
1309416Fars2phenylalanyl-tRNA synthetase 2, mitochondrial172831921528746217Rat
7672286Lyrm4LYR motif containing 4172874645728861849Rat
41372163Hdac1-ps16Histone deacetylase 1, pseudogene 16172884967128850978Rat
1308930Ppp1r3gprotein phosphatase 1, regulatory subunit 3G172887495628878288Rat
1310228Rpp40ribonuclease P/MRP subunit p40172894775228956788Rat

1 to 20 of 492 rows
1 to 20 of 420 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10119D17Arb4244173422548134225727Ratregion
10119D17Arb4244173422548134225872Ratregion
10119D17Arb4244173422556634225727Ratregion
10709D17Mgh3112174142981541429923Ratregion
11150D17Wox11134173787123537871375Ratregion
11151D17Wox18232173787115737871389Ratregion
33790D17Mit3194175348176653481960Ratregion
33860D17Mit10231175523786855238103Ratregion
33882D17Mit2129173199078431990913Ratregion
34120D17Mgh597175090909950909196Ratregion
34122D17Mgh8157175090909650909253Ratregion
34645D17Pas1339175278466452785007Ratregion
35985D17Rat20163173852519738525360Ratregion
36011D17Rat17157173583708535837242Ratregion
36107D17Rat29178175336728153367459Ratregion
36225D17Rat15136173136839131368534Ratregion
36259D17Rat19155174022395240224109Ratregion
36269D17Rat14151172743957027439721Ratregion
36329D17Rat32119175583607655836425Ratregion
36329D17Rat32119175583630655836425Ratregion
1 to 20 of 420 rows

Flank 1: (D17Rat12)
Rat AssemblyChrPosition (strand)Source
GRCr81727,233,445 - 27,233,623 (+)Marker Load Pipeline
mRatBN7.21727,027,949 - 27,028,127 (+)MAPPER
Rnor_6.01727,690,959 - 27,691,136NCBI
Rnor_5.01729,605,177 - 29,605,354UniSTS
RGSC_v3.41733,277,332 - 33,277,509UniSTS
RGSC_v3.41733,277,173 - 33,277,509RGD
RGSC_v3.11733,280,173 - 33,280,350RGD
Celera1726,659,615 - 26,659,792UniSTS
RH 3.4 Map17341.4RGD
RH 3.4 Map17341.4UniSTS
RH 2.0 Map17254.9RGD
SHRSP x BN Map1721.7999RGD
FHH x ACI Map1727.8099RGD
Peak: (D17Mgh5)
Rat AssemblyChrPosition (strand)Source
GRCr81755,604,597 - 55,604,694 (+)Marker Load Pipeline
mRatBN7.21750,909,099 - 50,909,196 (+)MAPPER
Rnor_6.01753,475,180 - 53,475,276NCBI
Rnor_5.01751,171,698 - 51,171,794UniSTS
RGSC_v3.41759,104,847 - 59,104,944RGD
RGSC_v3.41759,104,848 - 59,104,944UniSTS
RGSC_v3.11759,107,688 - 59,107,785RGD
Celera1746,929,911 - 46,930,007UniSTS
RH 3.4 Map17532.99UniSTS
RH 3.4 Map17532.99RGD
RH 2.0 Map17455.1RGD
SHRSP x BN Map1730.3699RGD
FHH x ACI Map1736.6499RGD
Cytogenetic Map17q12.1UniSTS
Flank 2: (D17Rat31)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21756,836,728 - 56,836,890 (+)MAPPER
Rnor_6.01761,794,454 - 61,794,615NCBI
Rnor_5.01763,569,165 - 63,569,326UniSTS
RGSC_v3.41765,478,169 - 65,478,569RGD
RGSC_v3.41765,478,200 - 65,478,361UniSTS
RGSC_v3.11765,489,033 - 65,489,194RGD
Celera1758,132,144 - 58,132,305UniSTS
RH 3.4 Map17560.7UniSTS
RH 3.4 Map17560.7RGD
RH 2.0 Map17514.1RGD
SHRSP x BN Map1732.6999RGD
FHH x ACI Map1742.1599RGD


1 to 10 of 69 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat

1 to 10 of 69 rows


Note Type Note Reference
qtl_statistics_details MapManager QTX used for linkage analysis; analysis was for male rats only 1578726