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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - ClinVar | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type 2 diabetes mellitus | ISO | RGD:1321035 | 8554872 | ClinVar Annotator: match by OMIM:125853 | ClinVar | PMID:17460697, PMID:24760768 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type 2 diabetes mellitus | ISO | RGD:1321035 | 8554872 | ClinVar Annotator: match by OMIM:125853 | ClinVar | PMID:17463246 more ... | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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References - curated| 1. | Cho YM, etal., Diabetologia. 2009 Feb;52(2):253-61. Epub 2008 Nov 11. |
| 2. | Kang ES, etal., Transplantation. 2009 Sep 15;88(5):693-8. |
| 3. | Lee YH, etal., J Hum Genet. 2008;53(11-12):991-8. Epub 2008 Nov 11. |
| 4. | OMIM Disease Annotation Pipeline |
| 5. | RGD automated data pipeline |
| 6. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 7. | RGD automated import pipeline for gene-chemical interactions |
| 8. | RGD comprehensive gene curation |
| 9. | Takeuchi F, etal., Diabetes. 2009 Jul;58(7):1690-9. Epub 2009 Apr 28. |
| 10. | Wu Y, etal., Diabetes. 2008 Oct;57(10):2834-42. Epub 2008 Jul 15. |
References - uncuratedComparative Map Data| Cdkal1 (Rattus norvegicus - Norway rat) |
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| CDKAL1 (Homo sapiens - human) |
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| Cdkal1 (Mus musculus - house mouse) |
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| Cdkal1 (Chinchilla lanigera - long-tailed chinchilla) |
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| CDKAL1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| CDKAL1 (Canis lupus familiaris - dog) |
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| Cdkal1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| CDKAL1 (Sus scrofa - pig) |
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Position Markers| D17Got48 |
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| RH131644 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Nucleotide Sequences| RefSeq Transcripts | NM_001108413 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006222382 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008771610 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008773955 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017587765 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07027545 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07027546 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027547 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027548 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027549 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027550 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027551 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027552 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027553 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027554 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027555 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027556 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027557 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027558 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027559 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027560 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027561 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027562 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027563 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027564 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027565 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027566 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027567 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091105 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091106 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091107 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091108 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091109 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091110 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091111 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091112 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091113 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091114 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091115 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091116 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091117 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091118 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091119 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091120 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091124 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091125 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091126 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091127 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091128 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091129 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01091130 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473977 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| JQ935002 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | XM_006222382 ⟹ XP_006222444 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGAGCATGCGCAAATAAGCCCGGCGGGACACAAGTGTCATGGCGCGCTCCATCTGAAGCCTGTGhide sequence |
| RefSeq Acc Id: | XM_008771610 ⟹ XP_008769832 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGAGCATGCGCAAATAAGCCCGGCGGGACACAAGTGTCATGGCGCGCTCCATCTGAAGCCTGTGhide sequence |
| RefSeq Acc Id: | XM_008773955 ⟹ XP_008772177 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CAACCCCTCTTTTCTTTTTTTTTAAAATTTCTTGAGACATTGTCTTAATGTGTTTTCCCTGCTAhide sequence |
| RefSeq Acc Id: | XM_017587765 ⟹ XP_017443254 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGAGCATGCGCAAATAAGCCCGGCGGGACACAAGTGTCATGGCGCGCTCCATCTGAAGCCTGTGhide sequence |
Protein Sequences| Protein RefSeqs | NP_001101883 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006222444 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008769832 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008772177 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017443254 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AFY09824 | (Get FASTA) | NCBI Sequence Viewer |
| EDL98384 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL98385 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL98386 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL98387 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | XP_006222444 ⟸ XM_006222382 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MPSASCDVLLDDIEDIISQEDSKPQDRHFSRKHVFPKVRRRNTQKYLQEEPSPPSDSTIPGIQKhide sequence |
| RefSeq Acc Id: | XP_008772177 ⟸ XM_008773955 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MPSASCDVLLDDIEDIISQEDSKPQDRHFSRKHVFPKVRRRNTQKYLQEEPSPPSDSTIPGIQKhide sequence |
| RefSeq Acc Id: | XP_008769832 ⟸ XM_008771610 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MPSASCDVLLDDIEDIISQEDSKPQDRHFSRKHVFPKVRRRNTQKYLQEEPSPPSDSTIPGIQKhide sequence |
| RefSeq Acc Id: | XP_017443254 ⟸ XM_017587765 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MPSASCDVLLDDIEDIISQEDSKPQDRHFSRKHVFPKVRRRNTQKYLQEEPSPPSDSTIPGIQKhide sequence |
TranscriptomePromoters| RGD ID: | 13700434 | |||||||||
| Promoter ID: | EPDNEW_R10956 | |||||||||
| Type: | multiple initiation site | |||||||||
| Name: | AABR07027567_1 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Sequence Variants (Rnor 6.0)
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External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1310246 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000018381 | UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000024854 | UniProtKB/TrEMBL |
| ENSRNOP00000065627 | UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000024854 | UniProtKB/TrEMBL |
| ENSRNOT00000071408 | UniProtKB/TrEMBL | |
| Gene3D-CATH | 3.40.50.12160 | UniProtKB/TrEMBL |
| 3.80.30.20 | UniProtKB/TrEMBL | |
| InterPro | Elp3/MiaB/NifB | UniProtKB/TrEMBL |
| Methylthiotransferase | UniProtKB/TrEMBL | |
| Methylthiotransferase_CS | UniProtKB/TrEMBL | |
| Methylthiotransferase_N | UniProtKB/TrEMBL | |
| Methylthiotransferase_N_sf | UniProtKB/TrEMBL | |
| MiaB-like_B | UniProtKB/TrEMBL | |
| rSAM | UniProtKB/TrEMBL | |
| rSAM_horseshoe | UniProtKB/TrEMBL | |
| TRAM_dom | UniProtKB/TrEMBL | |
| NCBI Gene | 361243 | ENTREZGENE |
| Pfam | Radical_SAM | UniProtKB/TrEMBL |
| TRAM | UniProtKB/TrEMBL | |
| UPF0004 | UniProtKB/TrEMBL | |
| PhenoGen | Cdkal1 | PhenoGen |
| PROSITE | MTTASE_N | UniProtKB/TrEMBL |
| MTTASE_RADICAL | UniProtKB/TrEMBL | |
| TRAM | UniProtKB/TrEMBL | |
| SMART | Elp3 | UniProtKB/TrEMBL |
| TIGRFAMs | MiaB-like-B | UniProtKB/TrEMBL |
| TIGR00089 | UniProtKB/TrEMBL | |
| UniGene | Rn.198339 | ENTREZGENE |
| UniProt | F1LV76_RAT | UniProtKB/TrEMBL |
| K9N0M9_RAT | UniProtKB/TrEMBL | |
| M0R837_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2008-04-30 | Cdkal1 | CDK5 regulatory subunit associated protein 1-like 1 | Cdkal1_predicted | CDK5 regulatory subunit associated protein 1-like 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-12 | Cdkal1_predicted | CDK5 regulatory subunit associated protein 1-like 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Cdkal1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1310246 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-10-16 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
