Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Ggps1 (geranylgeranyl diphosphate synthase 1) Rattus norvegicus
Analyze
Symbol: Ggps1
Name: geranylgeranyl diphosphate synthase 1
Description: Predicted to have farnesyltranstransferase activity; geranyltranstransferase activity; and identical protein binding activity. Predicted to be involved in isoprenoid metabolic process. Predicted to localize to cytoplasm. Orthologous to human GGPS1 (geranylgeranyl diphosphate synthase 1); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: (2E,6E)-farnesyl diphosphate synthase; Crlf3; dimethylallyltranstransferase; farnesyl diphosphate synthase; farnesyltranstransferase; geranylgeranyl pyrophosphate synthase; geranylgeranyl pyrophosphate synthetase; geranyltranstransferase; GGPP synthase; GGPP synthetase; GGPPSase; rGGPS1a; rGGPS1a1; rGGPS1a2; rGGPS1a3
Orthologs:
Homo sapiens (human) : GGPS1 (geranylgeranyl diphosphate synthase 1)  HGNC  Alliance
Mus musculus (house mouse) : Ggps1 (geranylgeranyl diphosphate synthase 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ggps1 (geranylgeranyl diphosphate synthase 1)
Pan paniscus (bonobo/pygmy chimpanzee) : GGPS1 (geranylgeranyl diphosphate synthase 1)
Canis lupus familiaris (dog) : GGPS1 (geranylgeranyl diphosphate synthase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ggps1 (geranylgeranyl diphosphate synthase 1)
Sus scrofa (pig) : GGPS1 (geranylgeranyl diphosphate synthase 1)
Chlorocebus sabaeus (African green monkey) : GGPS1 (geranylgeranyl diphosphate synthase 1)
Heterocephalus glaber (naked mole-rat) : Ggps1 (geranylgeranyl diphosphate synthase 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01753,956,185 - 53,971,039 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1753,956,203 - 53,971,443 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01751,649,809 - 51,665,285 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41759,458,469 - 59,470,856 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11759,469,315 - 59,482,261 (+)NCBI
Celera1747,270,878 - 47,283,263 (+)NCBICelera
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ggps1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1359680
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2020-05-05
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.