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Gene: Scgn (secretagogin, EF-hand calcium binding protein) Rattus norvegicus
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Symbol: Scgn
Name: secretagogin, EF-hand calcium binding protein
Description: Predicted to have calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to localize to several cellular components, including the cytosol; dendrite; and synapse. Orthologous to human SCGN (secretagogin, EF-hand calcium binding protein); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; 17alpha-ethynylestradiol (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: secretagogin
Orthologs:
Homo sapiens (human) : SCGN (secretagogin, EF-hand calcium binding protein)  HGNC  Alliance
Mus musculus (house mouse) : Scgn (secretagogin, EF-hand calcium binding protein)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Scgn (secretagogin, EF-hand calcium binding protein)
Pan paniscus (bonobo/pygmy chimpanzee) : SCGN (secretagogin, EF-hand calcium binding protein)
Canis lupus familiaris (dog) : SCGN (secretagogin, EF-hand calcium binding protein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Scgn (secretagogin, EF-hand calcium binding protein)
Sus scrofa (pig) : SCGN (secretagogin, EF-hand calcium binding protein)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01743,357,888 - 43,399,321 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,357,888 - 43,399,321 (+)Ensembl
Rnor_5.01745,214,579 - 45,256,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,225,075 - 48,266,508 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11748,227,915 - 48,269,349 (+)NCBI
Celera1740,739,598 - 40,779,916 (+)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Scgn
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1303281
Created: 2004-12-03
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.