D17Rat20 Marker Search Result - Rat Genome Database

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Marker: D17Rat20

Symbol: D17Rat20
Previously known as: oxsts6357; R028-B03; R0028-B03; 
RGD ID: 35985
Expected Size: 163 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21738,525,197 - 38,525,360 (+)MAPPERmRatBN7.2
Rnor_6.01740,483,425 - 40,483,587NCBIRnor6.0
Rnor_5.01742,369,902 - 42,370,064UniSTSRnor5.0
RGSC_v3.41745,465,707 - 45,465,869UniSTSRGSC3.4
RGSC_v3.41745,465,552 - 45,466,020RGDRGSC3.4
RGSC_v3.11745,468,548 - 45,468,710RGD
Celera1738,203,781 - 38,203,943UniSTS
RH 3.4 Map17438.1RGD
RH 3.4 Map17438.1UniSTS
RH 2.0 Map17313.3RGD
SHRSP x BN Map1730.4099RGD
Is Marker For: Strains:   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   NEDH/K   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer TTTTAATCCAGTGCTTTGAGCA
Reverse Primer TGAGTTTGAGTTTTGTGTGCA
 
Template 
CNGATCCCCCCCAAAATAGTCAACAATAGTCCATTTTGAGCCTTTTTTATTATTAGTGAACATA
TTTGTCATTTGAGAACTATAAATTCTGTTTAGCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
CGTGTGTGTGTGTGTGTGTGTGTGTGTCATGCATGAGTTTGAGTTTTGTGTGCATTCATAAGTT
TGTCTGTGTGTGTGTGTGTGTGTGTGAATTAAAAGTTGCATTTACACACATTTCAAATGATGCA
TTCTTATGGTTTGCAATATAGCCANNCCGCTAGAGCTTGCATAGTATGCTCAAAGCACTGGATT
AAAACTCATGCACTGCATAAAACCAACCAGTCATCATGGTGACTGTGCATGCCTATATNCACTG
CACTGNGGAAATAAAGCCAGAAAGANCACAAGTNCAAGGNCATCTTAAATGAGCCCCAGGCNNG
TATAGACCACNCGAGACCCNGTCTCAANACNNGTCNA
Strain, Expected Size(s)

ACI/N 164 BBDR/Rhw 158 BC/CpbU 164
BDIX/Han 164 BDVII/Cub 164 BN-Lx/Cub 164
BN/SsNHsd 164 BP/Cub 164 BUF/Pit 164
COP/OlaHsd 164 DA/PitN 164 DON/Melb 164
F344/Pit 164 FHH/Eur 164 GK/KyoSwe 164
IS/Kyo 164 LE/Mol 160 LEW/Pit 164
LH/Mav 164 LN/Mav 164 LOU/CHan 164
M520/N 164 MHS/Gib 164 MNR/N 164
MNRA/N 164 MNS/Gib 164 MR/Pit 164
NEDH/K 158 ODU/N 164 P5C 164
PVG/Pit 164 SD/Rij 164 SHR/OlaHsd 158
SHRSP/Riv 158 SR/Jr 164 WAG/RijKyo 164
WF/Pit 164 WIST/Nhg 164 WKY/OlaHsd 164
WN/N 164 WTC/Kyo 164


GenBank Nucleotide DH665099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat

1 to 10 of 45 rows