Crem (cAMP responsive element modulator) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Crem (cAMP responsive element modulator) Rattus norvegicus
Analyze
Symbol: Crem
Name: cAMP responsive element modulator
RGD ID: 2402
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including glucose metabolic process; regulation of circadian rhythm; and retinoic acid receptor signaling pathway. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Biomarker of transient cerebral ischemia. Orthologous to human CREM (cAMP responsive element modulator); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: cAMP responsive element moderator; cAMP-responsive element modulator; CRE modulator; CREM delta C-G; CREM-17X; Icer; inducible cyclic AMP early repressor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21754,238,889 - 54,305,989 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1754,239,030 - 54,305,989 (+)Ensembl
Rnor_6.01757,021,704 - 57,090,888 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1757,031,766 - 57,090,888 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01755,055,678 - 55,122,713 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41762,770,633 - 62,837,670 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11762,793,252 - 62,846,993 (+)NCBI
Celera1750,219,777 - 50,286,184 (+)NCBICelera
RH 3.4 Map17555.2RGD
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-noradrenaline  (ISO)
(S)-amphetamine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-fluoro-2,4-dinitrobenzene  (ISO)
15-acetyldeoxynivalenol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-phenylprop-2-enal  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
5-azacytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
allethrin  (EXP)
amiodarone  (EXP)
amitriptyline  (EXP)
ammonium chloride  (EXP)
ammonium hexachloroplatinate  (ISO)
amphetamine  (EXP,ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
bathocuproine disulfonic acid  (ISO)
benzbromarone  (EXP)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (EXP,ISO)
bezafibrate  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
bucladesine  (ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
carbofuran  (EXP)
carbon nanotube  (ISO)
clofibrate  (EXP)
clomipramine  (EXP)
cobalt dichloride  (ISO)
cocaine  (EXP,ISO)
colforsin daropate hydrochloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloromethane  (ISO)
dobutamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
ethanol  (EXP,ISO)
etoposide  (ISO)
eugenol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
furan  (EXP)
gallic acid  (ISO)
glafenine  (EXP)
glycidol  (EXP)
hydrogen peroxide  (EXP)
imipramine  (EXP)
ionomycin  (ISO)
isoprenaline  (EXP)
ketoconazole  (EXP)
L-ethionine  (EXP)
leflunomide  (EXP)
lipopolysaccharide  (EXP)
medroxyprogesterone acetate  (ISO)
mercury dichloride  (EXP)
methamphetamine  (EXP)
methotrexate  (ISO)
milrinone  (EXP)
morphine  (ISO)
N(6)-butyryl-cAMP  (EXP)
N-acetyl-L-cysteine  (EXP)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
omeprazole  (EXP)
oxaliplatin  (EXP)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phorone  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
propiconazole  (EXP)
pyrrolidine dithiocarbamate  (ISO)
ranitidine  (EXP)
reserpine  (EXP)
resveratrol  (EXP)
rotenone  (EXP,ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
sevoflurane  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
Soman  (EXP)
sunitinib  (ISO)
T-2 toxin  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
tolcapone  (EXP)
topotecan  (EXP)
torcetrapib  (ISO)
triadimefon  (EXP)
tributylstannane  (EXP)
Tributyltin oxide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
Triptolide  (EXP)
triptonide  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
valsartan  (EXP)
vancomycin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:1461747   PMID:8206879   PMID:8889548   PMID:11214319   PMID:11354513   PMID:12198242   PMID:12477932   PMID:12626549   PMID:14585816   PMID:14713288   PMID:14757819   PMID:16186489  
PMID:16269517   PMID:16893891   PMID:16899810   PMID:17185632   PMID:17624719   PMID:17681298   PMID:18073214   PMID:18180303   PMID:18308723   PMID:18922788   PMID:19543827   PMID:20488182  
PMID:20724525   PMID:21547497   PMID:21642009   PMID:22044735   PMID:22267842   PMID:22569987   PMID:23443664   PMID:23613279   PMID:25381014   PMID:25517116   PMID:27234251   PMID:28439100  
PMID:30118718  


Genomics

Candidate Gene Status
Crem is a candidate Gene for QTL Memor5
Comparative Map Data
Crem
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21754,238,889 - 54,305,989 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1754,239,030 - 54,305,989 (+)Ensembl
Rnor_6.01757,021,704 - 57,090,888 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1757,031,766 - 57,090,888 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01755,055,678 - 55,122,713 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41762,770,633 - 62,837,670 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11762,793,252 - 62,846,993 (+)NCBI
Celera1750,219,777 - 50,286,184 (+)NCBICelera
RH 3.4 Map17555.2RGD
Cytogenetic Map17q12.1NCBI
CREM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1035,126,791 - 35,212,958 (+)EnsemblGRCh38hg38GRCh38
GRCh381035,126,841 - 35,212,958 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371035,415,929 - 35,501,886 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361035,455,807 - 35,541,892 (+)NCBINCBI36hg18NCBI36
Build 341035,456,393 - 35,541,891NCBI
Celera1035,181,137 - 35,267,234 (+)NCBI
Cytogenetic Map10p11.21NCBI
HuRef1035,134,234 - 35,220,214 (+)NCBIHuRef
CHM1_11035,416,939 - 35,502,837 (+)NCBICHM1_1
Crem
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39183,263,181 - 3,337,688 (-)NCBIGRCm39mm39
GRCm39 Ensembl183,266,048 - 3,337,748 (-)Ensembl
GRCm38183,266,354 - 3,337,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl183,266,048 - 3,337,748 (-)EnsemblGRCm38mm10GRCm38
MGSCv37183,266,352 - 3,337,587 (-)NCBIGRCm37mm9NCBIm37
MGSCv36183,266,354 - 3,327,517 (-)NCBImm8
Celera183,313,578 - 3,387,320 (-)NCBICelera
Cytogenetic Map18A1NCBI
Crem
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554622,491,504 - 2,536,385 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554622,491,504 - 2,547,587 (-)NCBIChiLan1.0ChiLan1.0
CREM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11035,824,725 - 35,912,432 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1035,825,218 - 35,912,432 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01035,247,426 - 35,335,545 (+)NCBIMhudiblu_PPA_v0panPan3
CREM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.121,755,189 - 1,828,746 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl21,755,522 - 1,828,910 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha21,843,669 - 1,893,973 (-)NCBI
ROS_Cfam_1.022,037,957 - 2,111,330 (-)NCBI
UMICH_Zoey_3.121,809,553 - 1,859,860 (-)NCBI
UNSW_CanFamBas_1.021,853,133 - 1,903,529 (-)NCBI
UU_Cfam_GSD_1.021,973,934 - 2,024,249 (-)NCBI
Crem
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934413,971,103 - 14,048,763 (+)NCBI
SpeTri2.0NW_0049365743,478,969 - 3,546,738 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CREM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1057,829,518 - 57,895,610 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11057,829,523 - 57,895,610 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21063,437,821 - 63,504,496 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CREM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1934,418,956 - 34,503,774 (+)NCBIChlSab1.1chlSab2
ChlSab1.1934,418,956 - 34,503,774 (+)NCBIChlSab1.1chlSab2
ChlSab1.1934,418,956 - 34,503,774 (+)NCBIChlSab1.1chlSab2
ChlSab1.1934,418,956 - 34,503,774 (+)NCBIChlSab1.1chlSab2
ChlSab1.1934,418,956 - 34,503,774 (+)NCBIChlSab1.1chlSab2
ChlSab1.1934,418,956 - 34,503,774 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl934,418,947 - 34,506,930 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605643,570,059 - 43,655,135 (+)NCBIVero_WHO_p1.0
Crem
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248056,890,484 - 6,992,469 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AI556320  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,303,669 - 54,303,870 (+)MAPPERmRatBN7.2
Rnor_6.01757,088,569 - 57,088,769NCBIRnor6.0
Rnor_5.01755,120,394 - 55,120,594UniSTSRnor5.0
RGSC_v3.41762,836,677 - 62,836,877UniSTSRGSC3.4
Celera1750,283,865 - 50,284,065UniSTS
RH 3.4 Map17555.8UniSTS
Cytogenetic Map17q12.1UniSTS
AA930232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,275,281 - 54,275,360 (+)MAPPERmRatBN7.2
Rnor_6.01757,060,190 - 57,060,268NCBIRnor6.0
Rnor_5.01755,092,157 - 55,092,235UniSTSRnor5.0
RGSC_v3.41762,807,738 - 62,807,816UniSTSRGSC3.4
Celera1750,255,826 - 50,255,904UniSTS
Cytogenetic Map17q12.1UniSTS
RH94613  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,303,016 - 54,303,116 (+)MAPPERmRatBN7.2
Rnor_6.01757,087,916 - 57,088,015NCBIRnor6.0
Rnor_5.01755,119,741 - 55,119,840UniSTSRnor5.0
RGSC_v3.41762,836,024 - 62,836,123UniSTSRGSC3.4
Celera1750,283,212 - 50,283,311UniSTS
RH 3.4 Map17555.2UniSTS
Cytogenetic Map17q12.1UniSTS
RH138536  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,304,241 - 54,304,405 (+)MAPPERmRatBN7.2
Rnor_6.01757,089,141 - 57,089,304NCBIRnor6.0
Rnor_5.01755,120,966 - 55,121,129UniSTSRnor5.0
RGSC_v3.41762,837,249 - 62,837,412UniSTSRGSC3.4
Celera1750,284,437 - 50,284,600UniSTS
Cytogenetic Map17q12.1UniSTS
BI275488  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,275,686 - 54,275,795 (+)MAPPERmRatBN7.2
Rnor_6.01757,060,595 - 57,060,703NCBIRnor6.0
Rnor_5.01755,092,562 - 55,092,670UniSTSRnor5.0
RGSC_v3.41762,808,143 - 62,808,251UniSTSRGSC3.4
Celera1750,256,231 - 50,256,339UniSTS
RH 3.4 Map17555.7UniSTS
Cytogenetic Map17q12.1UniSTS
UniSTS:224716  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,303,077 - 54,303,251 (+)MAPPERmRatBN7.2
Rnor_6.01757,087,977 - 57,088,150NCBIRnor6.0
Rnor_5.01755,119,802 - 55,119,975UniSTSRnor5.0
RGSC_v3.41762,836,085 - 62,836,258UniSTSRGSC3.4
Celera1750,283,273 - 50,283,446UniSTS
Cytogenetic Map17q12.1UniSTS
GDB:1318198  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,282,603 - 54,282,663 (+)MAPPERmRatBN7.2
Rnor_6.01757,067,512 - 57,067,571NCBIRnor6.0
Rnor_5.01755,099,479 - 55,099,538UniSTSRnor5.0
RGSC_v3.41762,815,060 - 62,815,119UniSTSRGSC3.4
Celera1750,263,148 - 50,263,207UniSTS
Cytogenetic Map17q12.1UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)174207316069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)175090919660781426Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)175402992960463637Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:859
Count of miRNA genes:279
Interacting mature miRNAs:354
Transcripts:ENSRNOT00000020012, ENSRNOT00000020160, ENSRNOT00000020204, ENSRNOT00000068545, ENSRNOT00000074146
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 29 15 6 15 4 36 7
Low 3 43 28 26 13 26 8 11 74 31 5 4 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB031423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY011644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF564195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ194709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU760387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK595763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO556486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV716765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM033648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM089481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S66024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U04835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z15158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000020012   ⟹   ENSRNOP00000020012
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,267,750 - 54,305,989 (+)Ensembl
Rnor_6.0 Ensembl1757,074,525 - 57,090,888 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000020160   ⟹   ENSRNOP00000020160
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,239,030 - 54,303,642 (+)Ensembl
Rnor_6.0 Ensembl1757,033,573 - 57,088,378 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000020204   ⟹   ENSRNOP00000020204
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,239,036 - 54,303,649 (+)Ensembl
Rnor_6.0 Ensembl1757,040,023 - 57,088,502 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000068545   ⟹   ENSRNOP00000062109
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,239,036 - 54,303,649 (+)Ensembl
Rnor_6.0 Ensembl1757,031,766 - 57,088,306 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074146   ⟹   ENSRNOP00000067279
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1757,074,570 - 57,088,306 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089536   ⟹   ENSRNOP00000074062
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,257,422 - 54,305,989 (+)Ensembl
Rnor_6.0 Ensembl1757,075,218 - 57,090,888 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092187   ⟹   ENSRNOP00000070810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,239,036 - 54,303,649 (+)Ensembl
Rnor_6.0 Ensembl1757,031,766 - 57,087,910 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096686   ⟹   ENSRNOP00000083169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,257,251 - 54,305,989 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111611   ⟹   ENSRNOP00000083222
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,267,750 - 54,305,989 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112412   ⟹   ENSRNOP00000089944
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,250,771 - 54,305,989 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115950   ⟹   ENSRNOP00000090155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1754,250,203 - 54,305,989 (+)Ensembl
RefSeq Acc Id: NM_001110860   ⟹   NP_001104330
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,238,889 - 54,305,989 (+)NCBI
Rnor_6.01757,021,704 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
RGSC_v3.41762,770,633 - 62,837,670 (+)RGD
Celera1750,219,777 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271101   ⟹   NP_001258030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,238,889 - 54,305,989 (+)NCBI
Rnor_6.01757,021,704 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,219,777 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271102   ⟹   NP_001258031
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,289,625 - 54,305,989 (+)NCBI
Rnor_6.01757,074,525 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,269,820 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271245   ⟹   NP_001258174
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,289,625 - 54,305,989 (+)NCBI
Rnor_6.01757,074,525 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,269,820 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271246   ⟹   NP_001258175
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,290,318 - 54,305,989 (+)NCBI
Rnor_6.01757,075,218 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,270,513 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271247   ⟹   NP_001258176
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,290,318 - 54,305,989 (+)NCBI
Rnor_6.01757,075,218 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,270,513 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271248   ⟹   NP_001258177
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,290,318 - 54,305,984 (+)NCBI
Rnor_6.01757,075,218 - 57,090,883 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Celera1750,270,513 - 50,286,179 (+)NCBI
Sequence:
RefSeq Acc Id: NM_017334   ⟹   NP_059030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,289,625 - 54,305,989 (+)NCBI
Rnor_6.01757,074,525 - 57,090,888 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
RGSC_v3.41762,770,633 - 62,837,670 (+)RGD
Celera1750,269,820 - 50,286,184 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254049   ⟹   XP_006254111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,710 - 57,089,562 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254050   ⟹   XP_006254112
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,710 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254051   ⟹   XP_006254113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,053 - 54,304,663 (+)NCBI
Rnor_6.01757,021,819 - 57,089,562 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254052   ⟹   XP_006254114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,256,857 - 54,305,985 (+)NCBI
Rnor_6.01757,039,642 - 57,090,261 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254053   ⟹   XP_006254115
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,819 - 57,089,562 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254054   ⟹   XP_006254116
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,267,523 - 54,305,985 (+)NCBI
Rnor_6.01757,050,365 - 57,090,261 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254055   ⟹   XP_006254117
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,819 - 57,089,562 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254056   ⟹   XP_006254118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,837 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254057   ⟹   XP_006254119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,710 - 57,090,261 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254058   ⟹   XP_006254120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,710 - 57,089,562 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254059   ⟹   XP_006254121
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,710 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254060   ⟹   XP_006254122
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,256,969 - 54,305,985 (+)NCBI
Rnor_6.01757,039,643 - 57,090,261 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254061   ⟹   XP_006254123
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,256,966 - 54,305,985 (+)NCBI
Rnor_6.01757,039,644 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254062   ⟹   XP_006254124
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,256,846 - 54,305,985 (+)NCBI
Rnor_6.01757,039,644 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254063   ⟹   XP_006254125
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,267,741 - 54,305,985 (+)NCBI
Rnor_6.01757,050,368 - 57,090,261 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254064   ⟹   XP_006254126
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,838 - 57,089,562 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254065   ⟹   XP_006254127
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,838 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254066   ⟹   XP_006254128
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,838 - 57,089,562 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254067   ⟹   XP_006254129
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,052 - 54,304,663 (+)NCBI
Rnor_6.01757,021,838 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254068   ⟹   XP_006254130
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,256,856 - 54,305,985 (+)NCBI
Rnor_6.01757,039,645 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254069   ⟹   XP_006254131
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,288,997 - 54,305,985 (+)NCBI
Rnor_6.01757,074,137 - 57,090,261 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254070   ⟹   XP_006254132
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,289,113 - 54,305,985 (+)NCBI
Rnor_6.01757,073,619 - 57,089,044 (+)NCBI
Rnor_5.01755,055,678 - 55,122,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771691   ⟹   XP_008769913
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,288,910 - 54,305,985 (+)NCBI
Rnor_6.01757,074,136 - 57,090,261 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771692   ⟹   XP_008769914
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,250,786 - 54,305,985 (+)NCBI
Rnor_6.01757,033,579 - 57,090,261 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600458   ⟹   XP_017455947
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,250,788 - 54,305,985 (+)NCBI
Rnor_6.01757,033,610 - 57,090,261 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095381   ⟹   XP_038951309
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,053 - 54,304,663 (+)NCBI
RefSeq Acc Id: XM_039095382   ⟹   XP_038951310
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,022 - 54,305,985 (+)NCBI
RefSeq Acc Id: XM_039095384   ⟹   XP_038951312
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,289,738 - 54,305,985 (+)NCBI
RefSeq Acc Id: XM_039095385   ⟹   XP_038951313
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,239,067 - 54,305,985 (+)NCBI
RefSeq Acc Id: XM_039095386   ⟹   XP_038951314
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21754,250,777 - 54,305,985 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001104330 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258030 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258031 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258174 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258175 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258176 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258177 (Get FASTA)   NCBI Sequence Viewer  
  NP_059030 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254111 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254112 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254113 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254114 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254115 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254116 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254117 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254118 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254119 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254120 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254121 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254122 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254123 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254124 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254125 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254126 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254127 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254128 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254129 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254130 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254131 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254132 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769913 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769914 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455947 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951309 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951310 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951312 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951313 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951314 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA96340 (Get FASTA)   NCBI Sequence Viewer  
  AAB28273 (Get FASTA)   NCBI Sequence Viewer  
  AAG47557 (Get FASTA)   NCBI Sequence Viewer  
  AAH78899 (Get FASTA)   NCBI Sequence Viewer  
  BAA83552 (Get FASTA)   NCBI Sequence Viewer  
  CAA78857 (Get FASTA)   NCBI Sequence Viewer  
  EDL87463 (Get FASTA)   NCBI Sequence Viewer  
  EDL87464 (Get FASTA)   NCBI Sequence Viewer  
  EDL87465 (Get FASTA)   NCBI Sequence Viewer  
  EDL87466 (Get FASTA)   NCBI Sequence Viewer  
  EDL87467 (Get FASTA)   NCBI Sequence Viewer  
  EDL87468 (Get FASTA)   NCBI Sequence Viewer  
  EDL87469 (Get FASTA)   NCBI Sequence Viewer  
  EDL87470 (Get FASTA)   NCBI Sequence Viewer  
  Q03061 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_059030   ⟸   NM_017334
- Peptide Label: isoform 2
- UniProtKB: M0RCG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104330   ⟸   NM_001110860
- Peptide Label: isoform 3
- UniProtKB: Q03061 (UniProtKB/Swiss-Prot),   A0A0G2JYV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258030   ⟸   NM_001271101
- Peptide Label: isoform 4
- UniProtKB: Q03061 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258174   ⟸   NM_001271245
- Peptide Label: isoform 6
- Sequence:
RefSeq Acc Id: NP_001258031   ⟸   NM_001271102
- Peptide Label: isoform 5
- UniProtKB: D3ZXY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258176   ⟸   NM_001271247
- Peptide Label: isoform 8
- Sequence:
RefSeq Acc Id: NP_001258175   ⟸   NM_001271246
- Peptide Label: isoform 7
- UniProtKB: A0A0G2K748 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258177   ⟸   NM_001271248
- Peptide Label: isoform 9
- Sequence:
RefSeq Acc Id: XP_006254119   ⟸   XM_006254057
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006254111   ⟸   XM_006254049
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254120   ⟸   XM_006254058
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006254112   ⟸   XM_006254050
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006254121   ⟸   XM_006254059
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006254113   ⟸   XM_006254051
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006254117   ⟸   XM_006254055
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006254128   ⟸   XM_006254066
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_006254115   ⟸   XM_006254053
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006254126   ⟸   XM_006254064
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_006254118   ⟸   XM_006254056
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006254129   ⟸   XM_006254067
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_006254127   ⟸   XM_006254065
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006254114   ⟸   XM_006254052
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006254122   ⟸   XM_006254060
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_006254124   ⟸   XM_006254062
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_006254123   ⟸   XM_006254061
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006254130   ⟸   XM_006254068
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_006254116   ⟸   XM_006254054
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006254125   ⟸   XM_006254063
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_006254132   ⟸   XM_006254070
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_006254131   ⟸   XM_006254069
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: XP_008769914   ⟸   XM_008771692
- Peptide Label: isoform X27
- UniProtKB: A0A0G2K748 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769913   ⟸   XM_008771691
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: XP_017455947   ⟸   XM_017600458
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: ENSRNOP00000070810   ⟸   ENSRNOT00000092187
RefSeq Acc Id: ENSRNOP00000074062   ⟸   ENSRNOT00000089536
RefSeq Acc Id: ENSRNOP00000062109   ⟸   ENSRNOT00000068545
RefSeq Acc Id: ENSRNOP00000020204   ⟸   ENSRNOT00000020204
RefSeq Acc Id: ENSRNOP00000020012   ⟸   ENSRNOT00000020012
RefSeq Acc Id: ENSRNOP00000020160   ⟸   ENSRNOT00000020160
RefSeq Acc Id: ENSRNOP00000067279   ⟸   ENSRNOT00000074146
RefSeq Acc Id: XP_038951310   ⟸   XM_039095382
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038951309   ⟸   XM_039095381
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038951313   ⟸   XM_039095385
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038951314   ⟸   XM_039095386
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038951312   ⟸   XM_039095384
- Peptide Label: isoform X28
RefSeq Acc Id: ENSRNOP00000089944   ⟸   ENSRNOT00000112412
RefSeq Acc Id: ENSRNOP00000083169   ⟸   ENSRNOT00000096686
RefSeq Acc Id: ENSRNOP00000083222   ⟸   ENSRNOT00000111611
RefSeq Acc Id: ENSRNOP00000090155   ⟸   ENSRNOT00000115950
Protein Domains
bZIP   KID

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700530
Promoter ID:EPDNEW_R11053
Type:initiation region
Name:Crem_1
Description:cAMP responsive element modulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11054  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01757,074,526 - 57,074,586EPDNEW
RGD ID:13700531
Promoter ID:EPDNEW_R11054
Type:initiation region
Name:Crem_2
Description:cAMP responsive element modulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11053  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01757,075,291 - 57,075,351EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2402 AgrOrtholog
Ensembl Genes ENSRNOG00000014900 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000020012 UniProtKB/TrEMBL
  ENSRNOP00000020160 UniProtKB/TrEMBL
  ENSRNOP00000020204 UniProtKB/TrEMBL
  ENSRNOP00000062109 UniProtKB/Swiss-Prot
  ENSRNOP00000067279 UniProtKB/TrEMBL
  ENSRNOP00000070810 UniProtKB/TrEMBL
  ENSRNOP00000074062 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020012 UniProtKB/TrEMBL
  ENSRNOT00000020160 UniProtKB/TrEMBL
  ENSRNOT00000020204 UniProtKB/TrEMBL
  ENSRNOT00000068545 UniProtKB/Swiss-Prot
  ENSRNOT00000074146 UniProtKB/TrEMBL
  ENSRNOT00000089536 UniProtKB/TrEMBL
  ENSRNOT00000092187 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133070 IMAGE-MGC_LOAD
InterPro bZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coactivator_CBP_pKID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leuzip_CREB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25620 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93635 IMAGE-MGC_LOAD
NCBI Gene 25620 ENTREZGENE
PANTHER PTHR45879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  pKID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Crem PhenoGen
PROSITE BZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BRLZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC202440
UniProt A0A0G2JYV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K748 ENTREZGENE, UniProtKB/TrEMBL
  A0A140TAC0_RAT UniProtKB/TrEMBL
  A0A140TAC1_RAT UniProtKB/TrEMBL
  CREM_RAT UniProtKB/Swiss-Prot
  D3ZXY8 ENTREZGENE, UniProtKB/TrEMBL
  M0RCG1 ENTREZGENE, UniProtKB/TrEMBL
  Q03061 ENTREZGENE
  Q99NS8_RAT UniProtKB/TrEMBL
  Q9R1Q5_RAT UniProtKB/TrEMBL
UniProt Secondary Q6AYV1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-11-06 Crem  cAMP responsive element modulator    CAMP responsive element modulator  Name updated 625702 APPROVED
2002-06-10 Crem  CAMP responsive element modulator      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_disease increased expression of alternatively spliced isoform CREM-17X in pancreatic islet cells may contribute to impaired insulin secretion in type 2 diabetes 1298797
gene_function transcription factor for cAMP signaling pathway 729308
gene_process regulates transcription of cAMP-responsive genes 1298796
gene_process alternatively spliced CREM delta C-G isoform may regulate transcription during spermatogenesis 1298796
gene_process may be involved in neuronal adaptive plasticity 729308
gene_process alternatively spliced isoform CREM-17X represses insulin gene transcription 1298797
gene_process alternatively spliced isoform Icer represses cAMP-induced gene transcription along the hypothalamic-pituitary-gonadal axis 1298798
gene_process may repress transcription of anti-apoptotic genes to contribute to apoptosis in neurons 1298799
gene_transcript alternatively spliced form CREM delta C-G lacking four exons found in male germ cells 1298796
gene_transcript alternatively spliced isoform CREM-17X found in pancreatic islet cells 1298797
gene_transcript alternatively spliced isoform Icer results from use of alternative intronic promoter 1298798