Advanced Search (OLGA)

Gene: Jcad (junctional cadherin 5 associated) Rattus norvegicus

Analyze

Symbol:

Jcad

Name:

junctional cadherin 5 associated

RGD ID:

1562037

Description:

Predicted to be involved in several processes, including positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis; positive regulation of cell migration involved in sprouting angiogenesis; and positive regulation of signal transduction. Predicted to be located in cell-cell junction and perinuclear region of cytoplasm. Predicted to be active in adherens junction and ruffle membrane. Orthologous to human JCAD (junctional cadherin 5 associated); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

junctional protein associated with coronary artery disease; LOC498764; RGD1562037; similar to OTTHUMP00000046255

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	JCAD (junctional cadherin 5 associated)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Jcad (junctional cadherin 5 associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Jcad (junctional cadherin 5 associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	JCAD (junctional cadherin 5 associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	JCAD (junctional cadherin 5 associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Jcad (junctional cadherin 5 associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	JCAD (junctional cadherin 5 associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	JCAD (junctional cadherin 5 associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Jcad (junctional cadherin 5 associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Jcad (junctional cadherin 5 associated)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	JCAD (junctional cadherin 5 associated)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	jcada	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	jcad	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	57,784,634 - 57,826,213 (-)	NCBI		GRCr8
mRatBN7.2	17	53,089,382 - 53,130,996 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	53,089,382 - 53,130,967 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	17	55,667,754 - 55,709,738 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	55,670,331 - 55,709,740 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	53,350,740 - 53,392,719 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	61,352,776 - 61,391,912 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	49,091,895 - 49,133,491 (-)	NCBI		Celera
Cytogenetic Map	17	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

coronary artery disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-Nitrobenzanthrone (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

nickel atom (ISO)

nitrofen (EXP)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP)

poly(I:C) (EXP)

rotenone (EXP,ISO)

SB 431542 (ISO)

sunitinib (ISO)

trichostatin A (ISO)

triphenyl phosphate (EXP)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis (IBA,ISO)

positive regulation of cell migration involved in sprouting angiogenesis (ISO)

positive regulation of MAPK cascade (ISO)

positive regulation of sprouting angiogenesis (ISO)

positive regulation of vascular endothelial growth factor signaling pathway (ISO)

Cellular Component

adherens junction (IBA,ISO)

cell junction (ISO)

cell-cell junction (ISO)

perinuclear region of cytoplasm (ISO)

ruffle membrane (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21884682	PMID:28705794

Genomics

Comparative Map Data

Jcad
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	57,784,634 - 57,826,213 (-)	NCBI		GRCr8
mRatBN7.2	17	53,089,382 - 53,130,996 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	53,089,382 - 53,130,967 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	17	55,667,754 - 55,709,738 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	55,670,331 - 55,709,740 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	53,350,740 - 53,392,719 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	61,352,776 - 61,391,912 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	49,091,895 - 49,133,491 (-)	NCBI		Celera
Cytogenetic Map	17	q12.1	NCBI

JCAD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	30,012,803 - 30,115,494 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	30,012,803 - 30,115,494 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	30,301,732 - 30,404,423 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	30,343,390 - 30,376,806 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	10	30,066,704 - 30,113,471 (-)	NCBI		Celera
Cytogenetic Map	10	p11.23	NCBI
HuRef	10	30,020,289 - 30,066,873 (-)	NCBI		HuRef
CHM1_1	10	30,301,825 - 30,348,621 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	30,043,840 - 30,146,523 (-)	NCBI		T2T-CHM13v2.0

Jcad
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	4,590,775 - 4,682,869 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	4,634,878 - 4,682,869 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	4,590,792 - 4,682,869 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	4,634,878 - 4,682,869 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	4,634,927 - 4,682,867 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	4,634,927 - 4,682,867 (+)	NCBI		MGSCv36	mm8
Celera	18	4,680,287 - 4,727,209 (+)	NCBI		Celera
Cytogenetic Map	18	A1	NCBI
cM Map	18	3.01	NCBI

Jcad
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	21,954,149 - 22,035,754 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	21,954,274 - 22,038,953 (+)	NCBI	ChiLan1.0	ChiLan1.0

JCAD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	42,683,631 - 42,786,205 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	42,688,961 - 42,791,531 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	30,163,932 - 30,266,266 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	30,519,256 - 30,553,925 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	30,528,772 - 30,553,865 (-)	Ensembl	panpan1.1		panPan2

JCAD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	16,453,739 - 16,529,023 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	16,456,164 - 16,479,601 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	13,950,144 - 13,988,075 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	14,693,177 - 14,732,317 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	14,693,238 - 14,732,447 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	14,136,611 - 14,175,946 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	14,023,009 - 14,062,173 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	14,296,997 - 14,336,049 (-)	NCBI		UU_Cfam_GSD_1.0

Jcad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	9,481,075 - 9,532,660 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936613	4,047,265 - 4,083,272 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936613	4,047,310 - 4,083,235 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JCAD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	40,910,548 - 40,997,071 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	40,910,563 - 40,996,336 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	45,386,472 - 45,430,130 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JCAD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	29,615,543 - 29,725,240 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	29,620,631 - 29,655,511 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	35,706,748 - 35,804,880 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Jcad
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624805	2,819,751 - 2,902,430 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624805	2,819,299 - 2,901,394 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Jcad
290 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	111
Count of miRNA genes:	86
Interacting mature miRNAs:	93
Transcripts:	ENSRNOT00000033359
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	27389946	53481766	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	50890908	60781592	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	50890908	60781592	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24184890	79524188	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	42073160	69599340	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27027949	60463643	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	57246843	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			23930421	79524188	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	35837085	69599340	Rat
631497	Bp98	Blood pressure QTL 98	3.66		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	41354651	60463643	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	7e-07	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27027949	56836890	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	31368391	62109574	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317053	Aia25	Adjuvant induced arthritis QTL 25	2.69		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	50909196	60781426	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat

Markers in Region

RH130648

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	53,089,462 - 53,089,642 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	55,667,835 - 55,668,014	NCBI	Rnor6.0
Rnor_5.0	17	53,350,821 - 53,351,000	UniSTS	Rnor5.0
RGSC_v3.4	17	61,350,471 - 61,350,650	UniSTS	RGSC3.4
Celera	17	49,091,976 - 49,092,155	UniSTS
RH 3.4 Map	17	556.1	UniSTS
Cytogenetic Map	17	q12.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001056659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000033359 ⟹ ENSRNOP00000035031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	53,089,382 - 53,130,967 (-)	Ensembl
Rnor_6.0 Ensembl	17	55,670,331 - 55,709,740 (-)	Ensembl

RefSeq Acc Id:

NM_001427709 ⟹ NP_001414638

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,784,634 - 57,826,183 (-)	NCBI

RefSeq Acc Id:

XM_008771786 ⟹ XP_008770008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,784,634 - 57,811,879 (-)	NCBI
mRatBN7.2	17	53,091,854 - 53,116,627 (-)	NCBI
Rnor_6.0	17	55,671,208 - 55,694,950 (-)	NCBI

Sequence:

show sequence

ACACGTGAGCAACTCTGAAAAGCACAGCAGCAAGCCAAGAGGCCACCAGGAGTACCAAAGCTCT
TCTTCTAGAACTCCCGAGGCGGGGTGTCTTGCAGAAACACACTGTCAAGGAAGGACTTCCAGAG
ACCTTCCTGTGTCTTGGCAGCCACAGCTTCGCCAAGAGGCTTAGTCCATGTCCATAAGGAGGAC
TGTCTTTAGCTGCGGACCCGGCTAAGATTGAGAGGAGGACTGTACTAAATTCTTCAGGAGAAAC
AAAGAACCTAGGTAGTATGCAGCTCAGCAGTGGCCATCGGTGGCTTCTGTCATTAGCCGTAAAG
TCTCTGTGTGATCCTCTCTTGCACTTCTTTCCTCTGCCTGCTGTGAACTCCGCTGCTGAAGAAC
AGGGGGCTGGAGAGAGGAAACGCCCGCCCACATAGCGGCTGAGATGAGTGGACTCCCTTAAGCA
TCTGACATGACTCAGAGGTGGGGGCACATATGCGACAGGCTCTCTTCTCTCAGGAAGTGTGCTT
CTGCAAGATGACAGACCTGATGCACACACCCTGAAGCCCACTCTGTGTGCCAGCTGCCAGCCCA
GGCTACACTCGTGGAAACCAAGAAGCCACCACTGGACCAGGAGATGCATGCATGACTATGGGAC
CTCCCATCCTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGTTTTTAAG
TCAACCCTCCTTAGCATGGTCCTCTCAGCCCCAAAGTGGTAGAGACCACATCTACTGGAGCAGA
GGACAGCAGGAGGGCAGTGGCTCCCTGTGTCCCAGGGATCAGGAAGAAGTGGAGGTCAGAAGAA
TGGCTCAGGCTCACAGTCTGCCCATTCATGTGAGAGAGAGTCCATGGGAAGTTGCCAGAAGGAC
AGAGCATGTGATGAAGAATGCCCTTTGGGAAGCAGAGCTGAGAATGCCGACTCCTGCTAAGTGG
CAGGACATGACCTTGGAAAGCTGGAAGCAGCCAAGGAAGTTAGGGAGGCAAGCGTCTGATGGTG
ATGGACAGAAAAGATCCCAGGAAAGGTTCGAGGATCTGTACCAGTTTGTCCATGGAGAGCACAT
GCTGACATCTCAGAACAGAAAGAAATCCCAGTCACTGCCCCGAGCTCTTTCCCCCAAGAGCCTG
AATTTCACAGAAATTCCTGTTCCACTACATGATGGTCACATAACAGGTGTCCCAAAAGTGCCAC
CATACCCTCCCAGCTGCCCACCGCCTTTGGAACCCACAAGGAACCTTGAGAAGACTAGTTCCTC
AGGCCCTTTTCCCAGGCCTAAGTTTGGGAAACCCCTTAAGACTCCATGCCATGGCTCACAACCA
CAGCCCAGGGGAGAAGGTGGGTTTCAGGACCACCAGCACAGGGACCCACGTGGCTGCCATCCAA
CAAGGAGTAAGGATCCTGGCCATGAGTTGGGTATGCTGGATACTGGCTTGGAGCCCCCTGTGTA
TGTGCCTCCACCTTCATACAGGTCACCCCCGCAGCACATTCCAAACCCCTACCTTGAAGATCCC
ATTCCCAGGCATGTGAGCAGCAGCCAGAGCCAGCAGCAGCAACTACCTGAGAAACCTGAGGCCG
ACTGTCTGCTTCCTTCTGGCTCCCTTGCAGCTAGGGATCTCTACAATGCAATGCCTGGCTCTCC
TCCTCCAGGTCCTCCTCCACATCCTTATCCCATTGCCACCCATGGGGATTCTATTCAGTACATT
CCTTTTGATGACCCACGGATCCGACATATCAAACTAGCTCAGCCCCCAGAGTTCTATGAAGAGG
CAAGGCTCGAGGACACATCCTACAACTCTGGTTTCATTGCTACCCAGGAACCAGCTCTTGGGAA
AAGACAGTACAATGATGCCCTTTCAGCACCACGGGGCCCAATACTCCCACCAGTCAATGAGCGG
GGGTCTGCCTTCGCCCATTCCAGTCCCCAGTGGCTGCAGGGCCAGCTCCCCATGGCCAGTGAAC
CTGGAGGCTTCCCTGGCCAAACAGAGCATCATGGCATGCGAGGATTAACAGCTGATGTGAGAGA
CAGCAAGGTAGAAAGCCACGCCTCTTCTCCACAGCCACAGAGTGAGGGAACCTGCAGAACCCAC
ACGAAGCTCAGAAAGTTTGAAACTGGGATTCAGAGCAGGAAAAGTTCAAAGAAAAGTAACGCAA
CCATATTTTGTTTGGTTTCTGTCCCAGTTAAATCTGAGTCACTTGTGCCAGATACGGATACAAA
CAACAATGACTTAAAGCTGGGAGCTGATAAGAACCATGGGCTGTATCAGGGTCCAGCCCTGGAG
GAGCAGAGTCTGCTGAGTATGTCTTCCACTGACCTGGAGCTGCAAGCCCTCATGGGAAGCATGG
CCTGGAGAAGAACATCCCCAAGGCAAGTTCTGGGGGAGTCAGAAGATGGCCAAACTGATGACCC
CAGAACCCTCCACCTCATCAAACCCAGAGAACTCCGGGCTTCCGGCTCATGGCCAGGACACCAG
TACAGAGATCAGCAGACCCAAACCAGTTTCCCCGAAGACTCCAAAAGCTCACAGCTCCTCCCTG
CCACAAAGCCAGGAGAGGCCAGCAATGCAGCACTGACCCCAACATGCCCAGATGACACTGCCTC
TGAAGTACACCTGCATGCGGCCTTAGCATCCAGTGACCCCAGTCAGAAGCCCAGTGTACCTCAC
CTCCGCGGGCAAATGTCCCTCAGCCCATCTCGAAATAGTGCTTTCTCAAGGACTTCCTCAACCA
TAAACCAGACGTCTATGCCCAAAGGGGCTTCTGGCCAGCTCCCTAGTGCCAACCCTGTACCCAA
GCCAGAGGTGGTGAAGGGGGAGTCCACAGTAGGCCAATGCAATAGCACACAACTCTTTGGTCAG
TTTCTCTTGAAACCAGTAAGCCGGCGGCCCTGGGATCTGATAAGTCAGTTAGAAAGCTTTAACA
AGGAGCTTCAGGAAGAGGAAGAAAGCCATGGTGTTAGCAGTGGGGGCGATAGTGAAGACAGTGA
GGCAGAACAGCCAGAGGACTGTGCTGACTCCAGTGCCAAGACCAGGGGCCACCAGGAAACTAGA
AGAGAACAGCGGCCTGCAGAGCTGGCACTGGGGGAAGCAGGGCCCCCAGGAGGAAGACTTGGTG
AGTCACAGAGTCGGAGTAAGGAACCCAAACCTGGCCACCCGTGTGCCCGTTCACAGGCTCTGGG
GCCATCACAGGAGGAAGACAGCAGAGGCGTTCCAGTCCAGTGGGGACATGGAAACCTGTCTGCA
GAGCAGAAAAGCCAGGAGGCTTTGAATGGGATGTGTGAGCGAGACATTAGCCCAAGGCCTGTGA
GCAGGATTGCGCCGGTTGACACACAAGCAGCCTCTTTGTTCTGTCTGGCAGAACCGAGAGGAAG
TCAAGAACTCACCAAAGTCAACGATGCTTTAGGGTCTGTGGAGCTGGGCAGAGAGACTCCCATA
AGGGTGGATAATGGTGGGGACACCGAGGTCCTACCCTGTGTCCTGCCGCCCCTTGCTGACAGAT
GTCGAGGACTCTCAACACCGAACTTTCCATCTTTAGAGCTCACACTGGGACAAGAACAGCGTGC
CTATAAATCAGAGTGTCAGGGTCTAGACAACACCGTGGAAGTCCTTCCAAGTGAGTCTCTGCAG
GAAAGGGCAGAGAGGATCCTGGGCATTGAGGTAGCCGTGGAGTCCCTTCTGCCAGGTGCCAGGA
GAACAGAACAGAGCCAGCTCCCCAAGCCTGGTACAAGTGCCTGCAGCCCAAGATCATCCAGAGA
GGACTCACAGCCCAGCTCGGCATCCCCAGAGGACCCCACAGTGGCCACTGATGCTTTCTATGGC
AGGAGGAAGTGTGGCTGGACTGAGAGTCCTCTTTTTGTAGGAGAAAGGGCCCCCCAGGCTGCTG
TGTGCTCAGATGTGGATGGGTTCCCTACAAGCCAGGCCACCAGTCCTGAGCCTGAGAAAAAGAA
AGAGGCGAAACCACCCTTCAAGTCCACTCTGTTCCATTTCATGGAAAAGTCCACAAATGTGGTG
GGCCCTGAAAAGAGGCTCAGAAACTCTTCCAACGTAATCGAGAGCTCACAAGGAAAACTGGTGT
CACTCCCTAAGAGGGCAGACTCAGCTCGCTTGGTCAGAATGAGGGAGGTAAACTCCTTGTCTCA
GATGAGGTGTCTGAGCTCCAAGAGTGCAGACTCCATGGAGGAGCCGGACCCCTTAAAGGTCATC
AAGAGTTCAGCCTGGCCGTCAGAAGGCCTTACTTCCCCGAGTGGTAAAGATCAGGCCTGGCAAG
CAGAGTACCTGCCCTCTGTCTCTCAAAACGAAAACGGACACCCTGAAGTGATAAGGGAGAAAAT
GTCAGACCAGGACTTGTGGTGTGCAGGTAAGGAGTTGAGCTGGAGGGCAGAGGTTTGGTGTTAG
TTTGGAGTCATGTGATCATAGAAGCATGGCGAGTTGGTGAGTACTCACCTGAGTGCTGGCAACA
GTTTGATAGAATGATCCTTCACGCAGGCGTGACACACACTTGCCATCTCAGTACTTAGGAATCT
GACACAGGAAGAACTTGAAGGCCAGCCAGGGCTACATAGCAAGATATCGTCAATTAAAATTTTT
AAGAAGAGGGTCTGGCAAGGTTGCCAGCAGGTGACTGAGCCCCATCTCTGAGACCTGGGTAAAG
GTCACAGGAGAGAATCCTGTCTACGGAGTTGTGGATAATTATTCACGAGAATAATGAATACATT
TAAAAAGTAAACTCGTTTTCAAAAAAGTACCTAGCTTCCTCAATTAAGAATCAAGATCTTGCCA
CGTATTTTGAATGATTACGTCATTGGAATTGGTGAGGGAAGCAGCTACATAGAATTATTCTTAT
AAAGAGCTTCCCAGGCCTCTGAATGTGCTCCAGGCATGGGACGTGAGAATGTGTCGCAGACACG
CGCTTCCGCCGGCCTGGGCAGCTCAGTGCCTCATGTTGGAGACAGAACATTTCTCATCGCGTTC
TCTTCCAGAATAATAGACGTCCATCCAAATGGCCCCGATGACTGTTCTTTACTAACTTTCTTGT
TTTTATTTTTGCTTTTTTGAGATGAGGTTTCTACATGTGTTCCAGGCTAGTCTCAGACTTACGG
AGATCCATCTTCCTCTGCCTTCTGAGTGCTGGGATTAAAGGTGGGAGCCACCACACCCAGGCTT
TTTTCTCTTTTAAGATTTTTTTTCATACAATGTATTCTGATTCGTTTCCCCTCCCCCAACTCCT
TCCAGATCCTTCCAACTTCCCAACTCATCCACATTCATTTATTTCTTATTTTATGAGTGTGGGT
GTTTTCTCTGCATGCATGCTTTGTGTAGTACATCCATTCAGTACCTACAGAGGCCAGAGGAGGG
CGTCCGCACCTCCTGGAACTAAAGTGGCAGACAGCTGTATAGGGATAAAATACACAGAAAATCT
GAAATATCTTAATAATTTTACATTTAAAGGTTACATGTTGAAGTGGTAGTATTCTGGGCATGTT
AAGTGAATATATTTTGGATATATTTGGTGAAATAAAGTATATTATTAAAGATAATTTGTTTTAT
TGTACTTACCAGAAATTTTAAACTAACATTATATGACTCAGACTAGTTTTGTTGGACCTAGCCT
GCCTATGAAGTAAAGAACTTACTGTTCTAGAGCAGCGGTTCTCGGCCTTCCTAATGCTTCAGCT
TTCTAATACTTCTCTATGTTGTGGTGATCCCCAACCACAAGATTATTTCATTGCTAATTTATAG
CTCTTAATTTTGCTATGGTTATGAATCATAACTAAATATCAGGTATGCAGGGTGGTCTTAGGCA
ACCCCTGTGAAAGGGGTCATTCAACCCCCAAAGGGGTTGTGACAGACCCAGTGTTCTAGAGAGT
TCTTTACATGGCTCCTGGATTTGGGTCCTCAGCTTCAATTTTGGGTCTTGGGATTGAGGGCCAT
TATGTGGTGGTGTCTCCAGCATATCTGGCACTGAGGAGACCAGTTCAATTCCAGTTGCCTGTGT
GGTCTGAGGTTGTTTGGAGTGTGGCATTCTCCTCCATTATCCACCCTCCACTGTATCCTCAGCA
CGCAAGAAGCAGCATTCCTTGAGCTCCGAGCTGTAACTGTCTTCTTGTGTGGTCACATGGGCTG
TTGCTAGGGGCAGTGTCAAGAGGTGTTAAGTCATGGGAGCTCTACGTCCTTTAGCCAGGTGGGC
CAGAGCAGTCAGTCCATCAGTGAGCAGGCTCAGTGGCACGTCTGAGTGCCAGCCCTGTCCCTCC
TGTGCTGCACAGTGCTCCCAACACAATCTTAGTTTTCACCATCACTGTGCCTCGTATCCAGGTG
TGGCCAGCCAGCTGCAGTGACACATGGTAAAACCTGAGGCTGCAGGAGATGGGACAGACACCCA
TCATAGGATGTCACTTCCCAGGTGCATTTCAGAGGGTTGTTTTCTATAAAATCATACCAATCCT
GCAGACTTTAAAAAAAATCATCTTCCAGGCTATGGTAAGCCTTGCTGTTACTTTTTCTGTCCTC
ACTGAGGTTTTGACAGTAAGTGGGTAAGATGCTACTCTCTTTAGGATGCACATAGTGCTTGAGT
GACCATGTATTGTATGCTAAGTATGATAATCACACTAATCAACATGTCCATCAGCTCCTAGTCC
CTTGGCACAGTTTAAGTGCACGAGCTCTGTTAACTATGTCCCCTGTAATGTGCTACCTCAAGGC
AGGAGTTCACCTTACAGTTGCAACTTTGTACTCTTTCCACTGTCTCCTCTCTGCCCTACACCCA
GCTCCTAGAAACTACCATCCTATACTCTTTTACTACAGGGGTAACCTAAAAGCAAACCCACATG
TGACATCCCAGTGCTGTGCTCTCTTAGCTTAGCTGTGTCACTGTGAATGACAAGAGTGCTCCTT
TTTGATGCTGATTCGTTGTGCAGACATTTGTTTGCAGAAAGAACGTTTCTTCCCTCACTCTCTG
TTGGCAGACGCTTGGGTGGTTCTACCTCCTGACATAACCAGTGCAGCGCACATGGATGTCCAGA
CACCTGGGAGTGAGGTTGCTGGATTTTATAATAGTTCTATTTCTGTTTATATTTTTTGAGAGAT
CTCTACATTTTAAAGGCTATCTTGTACTCTTACAGATTTTAGGACTGGTAAGGCAGGGAACTCT
GATGACAGAGGCGAGCCTCAGTCTCCAGGGCGCCAAGGGTCAGACTGTCCAGGTCAACAGCATA
CATTTCCCATCCCAGTGGCAGTTTGGGATTCTTGTCCCTTTCTATGGTGCTCCATTCAAGAAAT
TCAGGTCATCTGGGCTCAGTTTGAGCAGCCGGTTCTGATCCTGCCTGTTGGCTGGTGGCAGCTG
GAGACAGAAAAACTGTTCTTGTTAGCCATGTATTTGACAGTTCAGTTCCCCAAGCCTCAGAGGG
AGGGATTTGTTCATAAAAATGCTGTCATTCAGATTGAGGGGAGA

hide sequence

RefSeq Acc Id:

XM_008771788 ⟹ XP_008770010

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,784,634 - 57,811,875 (-)	NCBI
mRatBN7.2	17	53,091,854 - 53,116,629 (-)	NCBI
Rnor_6.0	17	55,671,208 - 55,694,944 (-)	NCBI

Sequence:

show sequence

GAGCAACTCTGAAAAGCACAGCAGCAAGCCAAGAGGCCACCAGGAGTACCAAAGCTCTTCTTCT
AGAACTCCCGAGGCGGGGATGAGTGGACTCCCTTAAGCATCTGACATGACTCAGAGGTGGGGGC
ACATATGCGACAGGCTCTCTTCTCTCAGGAAGTGTGCTTCTGCAAGATGACAGACCTGATGCAC
ACACCCTGAAGCCCACTCTGTGTGCCAGCTGCCAGCCCAGGCTACACTCGTGGAAACCAAGAAG
CCACCACTGGACCAGGAGATGCATGCATGACTATGGGACCTCCCATCCTGTCTTAGTTAGGGTT
TTACTGCTGTGAACAGACACCATGACCAAGGTTTTTAAGTCAACCCTCCTTAGCATGGTCCTCT
CAGCCCCAAAGTGGTAGAGACCACATCTACTGGAGCAGAGGACAGCAGGAGGGCAGTGGCTCCC
TGTGTCCCAGGGATCAGGAAGAAGTGGAGGTCAGAAGAATGGCTCAGGCTCACAGTCTGCCCAT
TCATGTGAGAGAGAGTCCATGGGAAGTTGCCAGAAGGACAGAGCATGTGATGAAGAATGCCCTT
TGGGAAGCAGAGCTGAGAATGCCGACTCCTGCTAAGTGGCAGGACATGACCTTGGAAAGCTGGA
AGCAGCCAAGGAAGTTAGGGAGGCAAGCGTCTGATGGTGATGGACAGAAAAGATCCCAGGAAAG
GTTCGAGGATCTGTACCAGTTTGTCCATGGAGAGCACATGCTGACATCTCAGAACAGAAAGAAA
TCCCAGTCACTGCCCCGAGCTCTTTCCCCCAAGAGCCTGAATTTCACAGAAATTCCTGTTCCAC
TACATGATGGTCACATAACAGGTGTCCCAAAAGTGCCACCATACCCTCCCAGCTGCCCACCGCC
TTTGGAACCCACAAGGAACCTTGAGAAGACTAGTTCCTCAGGCCCTTTTCCCAGGCCTAAGTTT
GGGAAACCCCTTAAGACTCCATGCCATGGCTCACAACCACAGCCCAGGGGAGAAGGTGGGTTTC
AGGACCACCAGCACAGGGACCCACGTGGCTGCCATCCAACAAGGAGTAAGGATCCTGGCCATGA
GTTGGGTATGCTGGATACTGGCTTGGAGCCCCCTGTGTATGTGCCTCCACCTTCATACAGGTCA
CCCCCGCAGCACATTCCAAACCCCTACCTTGAAGATCCCATTCCCAGGCATGTGAGCAGCAGCC
AGAGCCAGCAGCAGCAACTACCTGAGAAACCTGAGGCCGACTGTCTGCTTCCTTCTGGCTCCCT
TGCAGCTAGGGATCTCTACAATGCAATGCCTGGCTCTCCTCCTCCAGGTCCTCCTCCACATCCT
TATCCCATTGCCACCCATGGGGATTCTATTCAGTACATTCCTTTTGATGACCCACGGATCCGAC
ATATCAAACTAGCTCAGCCCCCAGAGTTCTATGAAGAGGCAAGGCTCGAGGACACATCCTACAA
CTCTGGTTTCATTGCTACCCAGGAACCAGCTCTTGGGAAAAGACAGTACAATGATGCCCTTTCA
GCACCACGGGGCCCAATACTCCCACCAGTCAATGAGCGGGGGTCTGCCTTCGCCCATTCCAGTC
CCCAGTGGCTGCAGGGCCAGCTCCCCATGGCCAGTGAACCTGGAGGCTTCCCTGGCCAAACAGA
GCATCATGGCATGCGAGGATTAACAGCTGATGTGAGAGACAGCAAGGTAGAAAGCCACGCCTCT
TCTCCACAGCCACAGAGTGAGGGAACCTGCAGAACCCACACGAAGCTCAGAAAGTTTGAAACTG
GGATTCAGAGCAGGAAAAGTTCAAAGAAAAGTAACGCAACCATATTTTGTTTGGTTTCTGTCCC
AGTTAAATCTGAGTCACTTGTGCCAGATACGGATACAAACAACAATGACTTAAAGCTGGGAGCT
GATAAGAACCATGGGCTGTATCAGGGTCCAGCCCTGGAGGAGCAGAGTCTGCTGAGTATGTCTT
CCACTGACCTGGAGCTGCAAGCCCTCATGGGAAGCATGGCCTGGAGAAGAACATCCCCAAGGCA
AGTTCTGGGGGAGTCAGAAGATGGCCAAACTGATGACCCCAGAACCCTCCACCTCATCAAACCC
AGAGAACTCCGGGCTTCCGGCTCATGGCCAGGACACCAGTACAGAGATCAGCAGACCCAAACCA
GTTTCCCCGAAGACTCCAAAAGCTCACAGCTCCTCCCTGCCACAAAGCCAGGAGAGGCCAGCAA
TGCAGCACTGACCCCAACATGCCCAGATGACACTGCCTCTGAAGTACACCTGCATGCGGCCTTA
GCATCCAGTGACCCCAGTCAGAAGCCCAGTGTACCTCACCTCCGCGGGCAAATGTCCCTCAGCC
CATCTCGAAATAGTGCTTTCTCAAGGACTTCCTCAACCATAAACCAGACGTCTATGCCCAAAGG
GGCTTCTGGCCAGCTCCCTAGTGCCAACCCTGTACCCAAGCCAGAGGTGGTGAAGGGGGAGTCC
ACAGTAGGCCAATGCAATAGCACACAACTCTTTGGTCAGTTTCTCTTGAAACCAGTAAGCCGGC
GGCCCTGGGATCTGATAAGTCAGTTAGAAAGCTTTAACAAGGAGCTTCAGGAAGAGGAAGAAAG
CCATGGTGTTAGCAGTGGGGGCGATAGTGAAGACAGTGAGGCAGAACAGCCAGAGGACTGTGCT
GACTCCAGTGCCAAGACCAGGGGCCACCAGGAAACTAGAAGAGAACAGCGGCCTGCAGAGCTGG
CACTGGGGGAAGCAGGGCCCCCAGGAGGAAGACTTGGTGAGTCACAGAGTCGGAGTAAGGAACC
CAAACCTGGCCACCCGTGTGCCCGTTCACAGGCTCTGGGGCCATCACAGGAGGAAGACAGCAGA
GGCGTTCCAGTCCAGTGGGGACATGGAAACCTGTCTGCAGAGCAGAAAAGCCAGGAGGCTTTGA
ATGGGATGTGTGAGCGAGACATTAGCCCAAGGCCTGTGAGCAGGATTGCGCCGGTTGACACACA
AGCAGCCTCTTTGTTCTGTCTGGCAGAACCGAGAGGAAGTCAAGAACTCACCAAAGTCAACGAT
GCTTTAGGGTCTGTGGAGCTGGGCAGAGAGACTCCCATAAGGGTGGATAATGGTGGGGACACCG
AGGTCCTACCCTGTGTCCTGCCGCCCCTTGCTGACAGATGTCGAGGACTCTCAACACCGAACTT
TCCATCTTTAGAGCTCACACTGGGACAAGAACAGCGTGCCTATAAATCAGAGTGTCAGGGTCTA
GACAACACCGTGGAAGTCCTTCCAAGTGAGTCTCTGCAGGAAAGGGCAGAGAGGATCCTGGGCA
TTGAGGTAGCCGTGGAGTCCCTTCTGCCAGGTGCCAGGAGAACAGAACAGAGCCAGCTCCCCAA
GCCTGGTACAAGTGCCTGCAGCCCAAGATCATCCAGAGAGGACTCACAGCCCAGCTCGGCATCC
CCAGAGGACCCCACAGTGGCCACTGATGCTTTCTATGGCAGGAGGAAGTGTGGCTGGACTGAGA
GTCCTCTTTTTGTAGGAGAAAGGGCCCCCCAGGCTGCTGTGTGCTCAGATGTGGATGGGTTCCC
TACAAGCCAGGCCACCAGTCCTGAGCCTGAGAAAAAGAAAGAGGCGAAACCACCCTTCAAGTCC
ACTCTGTTCCATTTCATGGAAAAGTCCACAAATGTGGTGGGCCCTGAAAAGAGGCTCAGAAACT
CTTCCAACGTAATCGAGAGCTCACAAGGAAAACTGGTGTCACTCCCTAAGAGGGCAGACTCAGC
TCGCTTGGTCAGAATGAGGGAGGTAAACTCCTTGTCTCAGATGAGGTGTCTGAGCTCCAAGAGT
GCAGACTCCATGGAGGAGCCGGACCCCTTAAAGGTCATCAAGAGTTCAGCCTGGCCGTCAGAAG
GCCTTACTTCCCCGAGTGGTAAAGATCAGGCCTGGCAAGCAGAGTACCTGCCCTCTGTCTCTCA
AAACGAAAACGGACACCCTGAAGTGATAAGGGAGAAAATGTCAGACCAGGACTTGTGGTGTGCA
GGTAAGGAGTTGAGCTGGAGGGCAGAGGTTTGGTGTTAGTTTGGAGTCATGTGATCATAGAAGC
ATGGCGAGTTGGTGAGTACTCACCTGAGTGCTGGCAACAGTTTGATAGAATGATCCTTCACGCA
GGCGTGACACACACTTGCCATCTCAGTACTTAGGAATCTGACACAGGAAGAACTTGAAGGCCAG
CCAGGGCTACATAGCAAGATATCGTCAATTAAAATTTTTAAGAAGAGGGTCTGGCAAGGTTGCC
AGCAGGTGACTGAGCCCCATCTCTGAGACCTGGGTAAAGGTCACAGGAGAGAATCCTGTCTACG
GAGTTGTGGATAATTATTCACGAGAATAATGAATACATTTAAAAAGTAAACTCGTTTTCAAAAA
AGTACCTAGCTTCCTCAATTAAGAATCAAGATCTTGCCACGTATTTTGAATGATTACGTCATTG
GAATTGGTGAGGGAAGCAGCTACATAGAATTATTCTTATAAAGAGCTTCCCAGGCCTCTGAATG
TGCTCCAGGCATGGGACGTGAGAATGTGTCGCAGACACGCGCTTCCGCCGGCCTGGGCAGCTCA
GTGCCTCATGTTGGAGACAGAACATTTCTCATCGCGTTCTCTTCCAGAATAATAGACGTCCATC
CAAATGGCCCCGATGACTGTTCTTTACTAACTTTCTTGTTTTTATTTTTGCTTTTTTGAGATGA
GGTTTCTACATGTGTTCCAGGCTAGTCTCAGACTTACGGAGATCCATCTTCCTCTGCCTTCTGA
GTGCTGGGATTAAAGGTGGGAGCCACCACACCCAGGCTTTTTTCTCTTTTAAGATTTTTTTTCA
TACAATGTATTCTGATTCGTTTCCCCTCCCCCAACTCCTTCCAGATCCTTCCAACTTCCCAACT
CATCCACATTCATTTATTTCTTATTTTATGAGTGTGGGTGTTTTCTCTGCATGCATGCTTTGTG
TAGTACATCCATTCAGTACCTACAGAGGCCAGAGGAGGGCGTCCGCACCTCCTGGAACTAAAGT
GGCAGACAGCTGTATAGGGATAAAATACACAGAAAATCTGAAATATCTTAATAATTTTACATTT
AAAGGTTACATGTTGAAGTGGTAGTATTCTGGGCATGTTAAGTGAATATATTTTGGATATATTT
GGTGAAATAAAGTATATTATTAAAGATAATTTGTTTTATTGTACTTACCAGAAATTTTAAACTA
ACATTATATGACTCAGACTAGTTTTGTTGGACCTAGCCTGCCTATGAAGTAAAGAACTTACTGT
TCTAGAGCAGCGGTTCTCGGCCTTCCTAATGCTTCAGCTTTCTAATACTTCTCTATGTTGTGGT
GATCCCCAACCACAAGATTATTTCATTGCTAATTTATAGCTCTTAATTTTGCTATGGTTATGAA
TCATAACTAAATATCAGGTATGCAGGGTGGTCTTAGGCAACCCCTGTGAAAGGGGTCATTCAAC
CCCCAAAGGGGTTGTGACAGACCCAGTGTTCTAGAGAGTTCTTTACATGGCTCCTGGATTTGGG
TCCTCAGCTTCAATTTTGGGTCTTGGGATTGAGGGCCATTATGTGGTGGTGTCTCCAGCATATC
TGGCACTGAGGAGACCAGTTCAATTCCAGTTGCCTGTGTGGTCTGAGGTTGTTTGGAGTGTGGC
ATTCTCCTCCATTATCCACCCTCCACTGTATCCTCAGCACGCAAGAAGCAGCATTCCTTGAGCT
CCGAGCTGTAACTGTCTTCTTGTGTGGTCACATGGGCTGTTGCTAGGGGCAGTGTCAAGAGGTG
TTAAGTCATGGGAGCTCTACGTCCTTTAGCCAGGTGGGCCAGAGCAGTCAGTCCATCAGTGAGC
AGGCTCAGTGGCACGTCTGAGTGCCAGCCCTGTCCCTCCTGTGCTGCACAGTGCTCCCAACACA
ATCTTAGTTTTCACCATCACTGTGCCTCGTATCCAGGTGTGGCCAGCCAGCTGCAGTGACACAT
GGTAAAACCTGAGGCTGCAGGAGATGGGACAGACACCCATCATAGGATGTCACTTCCCAGGTGC
ATTTCAGAGGGTTGTTTTCTATAAAATCATACCAATCCTGCAGACTTTAAAAAAAATCATCTTC
CAGGCTATGGTAAGCCTTGCTGTTACTTTTTCTGTCCTCACTGAGGTTTTGACAGTAAGTGGGT
AAGATGCTACTCTCTTTAGGATGCACATAGTGCTTGAGTGACCATGTATTGTATGCTAAGTATG
ATAATCACACTAATCAACATGTCCATCAGCTCCTAGTCCCTTGGCACAGTTTAAGTGCACGAGC
TCTGTTAACTATGTCCCCTGTAATGTGCTACCTCAAGGCAGGAGTTCACCTTACAGTTGCAACT
TTGTACTCTTTCCACTGTCTCCTCTCTGCCCTACACCCAGCTCCTAGAAACTACCATCCTATAC
TCTTTTACTACAGGGGTAACCTAAAAGCAAACCCACATGTGACATCCCAGTGCTGTGCTCTCTT
AGCTTAGCTGTGTCACTGTGAATGACAAGAGTGCTCCTTTTTGATGCTGATTCGTTGTGCAGAC
ATTTGTTTGCAGAAAGAACGTTTCTTCCCTCACTCTCTGTTGGCAGACGCTTGGGTGGTTCTAC
CTCCTGACATAACCAGTGCAGCGCACATGGATGTCCAGACACCTGGGAGTGAGGTTGCTGGATT
TTATAATAGTTCTATTTCTGTTTATATTTTTTGAGAGATCTCTACATTTTAAAGGCTATCTTGT
ACTCTTACAGATTTTAGGACTGGTAAGGCAGGGAACTCTGATGACAGAGGCGAGCCTCAGTCTC
CAGGGCGCCAAGGGTCAGACTGTCCAGGTCAACAGCATACATTTCCCATCCCAGTGGCAGTTTG
GGATTCTTGTCCCTTTCTATGGTGCTCCATTCAAGAAATTCAGGTCATCTGGGCTCAGTTTGAG
CAGCCGGTTCTGATCCTGCCTGTTGGCTGGTGGCAGCTGGAGACAGAAAAACTGTTCTTGTTAG
CCATGTATTTGACAGTTCAGTTCCCCAAGCCTCAGAGGGAGGGATTTGTTCATAAAAATGCTGT
CATTCAGATTGAGGGGAGA

hide sequence

RefSeq Acc Id:

XM_008771790 ⟹ XP_008770012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,784,634 - 57,811,882 (-)	NCBI
mRatBN7.2	17	53,091,854 - 53,116,630 (-)	NCBI
Rnor_6.0	17	55,671,208 - 55,694,945 (-)	NCBI

Sequence:

show sequence

TGAGCAACTCTGAAAAGCACAGCAGCAAGCCAAGAGGCCACCAGGAGTACCAAAGCTCTTCTTC
TAGAACTCCCGAGGCGGGGCTACACTCGTGGAAACCAAGAAGCCACCACTGGACCAGGAGATGC
ATGCATGACTATGGGACCTCCCATCCTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCA
TGACCAAGGTTTTTAAGTCAACCCTCCTTAGCATGGTCCTCTCAGCCCCAAAGTGGTAGAGACC
ACATCTACTGGAGCAGAGGACAGCAGGAGGGCAGTGGCTCCCTGTGTCCCAGGGATCAGGAAGA
AGTGGAGGTCAGAAGAATGGCTCAGGCTCACAGTCTGCCCATTCATGTGAGAGAGAGTCCATGG
GAAGTTGCCAGAAGGACAGAGCATGTGATGAAGAATGCCCTTTGGGAAGCAGAGCTGAGAATGC
CGACTCCTGCTAAGTGGCAGGACATGACCTTGGAAAGCTGGAAGCAGCCAAGGAAGTTAGGGAG
GCAAGCGTCTGATGGTGATGGACAGAAAAGATCCCAGGAAAGGTTCGAGGATCTGTACCAGTTT
GTCCATGGAGAGCACATGCTGACATCTCAGAACAGAAAGAAATCCCAGTCACTGCCCCGAGCTC
TTTCCCCCAAGAGCCTGAATTTCACAGAAATTCCTGTTCCACTACATGATGGTCACATAACAGG
TGTCCCAAAAGTGCCACCATACCCTCCCAGCTGCCCACCGCCTTTGGAACCCACAAGGAACCTT
GAGAAGACTAGTTCCTCAGGCCCTTTTCCCAGGCCTAAGTTTGGGAAACCCCTTAAGACTCCAT
GCCATGGCTCACAACCACAGCCCAGGGGAGAAGGTGGGTTTCAGGACCACCAGCACAGGGACCC
ACGTGGCTGCCATCCAACAAGGAGTAAGGATCCTGGCCATGAGTTGGGTATGCTGGATACTGGC
TTGGAGCCCCCTGTGTATGTGCCTCCACCTTCATACAGGTCACCCCCGCAGCACATTCCAAACC
CCTACCTTGAAGATCCCATTCCCAGGCATGTGAGCAGCAGCCAGAGCCAGCAGCAGCAACTACC
TGAGAAACCTGAGGCCGACTGTCTGCTTCCTTCTGGCTCCCTTGCAGCTAGGGATCTCTACAAT
GCAATGCCTGGCTCTCCTCCTCCAGGTCCTCCTCCACATCCTTATCCCATTGCCACCCATGGGG
ATTCTATTCAGTACATTCCTTTTGATGACCCACGGATCCGACATATCAAACTAGCTCAGCCCCC
AGAGTTCTATGAAGAGGCAAGGCTCGAGGACACATCCTACAACTCTGGTTTCATTGCTACCCAG
GAACCAGCTCTTGGGAAAAGACAGTACAATGATGCCCTTTCAGCACCACGGGGCCCAATACTCC
CACCAGTCAATGAGCGGGGGTCTGCCTTCGCCCATTCCAGTCCCCAGTGGCTGCAGGGCCAGCT
CCCCATGGCCAGTGAACCTGGAGGCTTCCCTGGCCAAACAGAGCATCATGGCATGCGAGGATTA
ACAGCTGATGTGAGAGACAGCAAGGTAGAAAGCCACGCCTCTTCTCCACAGCCACAGAGTGAGG
GAACCTGCAGAACCCACACGAAGCTCAGAAAGTTTGAAACTGGGATTCAGAGCAGGAAAAGTTC
AAAGAAAAGTAACGCAACCATATTTTGTTTGGTTTCTGTCCCAGTTAAATCTGAGTCACTTGTG
CCAGATACGGATACAAACAACAATGACTTAAAGCTGGGAGCTGATAAGAACCATGGGCTGTATC
AGGGTCCAGCCCTGGAGGAGCAGAGTCTGCTGAGTATGTCTTCCACTGACCTGGAGCTGCAAGC
CCTCATGGGAAGCATGGCCTGGAGAAGAACATCCCCAAGGCAAGTTCTGGGGGAGTCAGAAGAT
GGCCAAACTGATGACCCCAGAACCCTCCACCTCATCAAACCCAGAGAACTCCGGGCTTCCGGCT
CATGGCCAGGACACCAGTACAGAGATCAGCAGACCCAAACCAGTTTCCCCGAAGACTCCAAAAG
CTCACAGCTCCTCCCTGCCACAAAGCCAGGAGAGGCCAGCAATGCAGCACTGACCCCAACATGC
CCAGATGACACTGCCTCTGAAGTACACCTGCATGCGGCCTTAGCATCCAGTGACCCCAGTCAGA
AGCCCAGTGTACCTCACCTCCGCGGGCAAATGTCCCTCAGCCCATCTCGAAATAGTGCTTTCTC
AAGGACTTCCTCAACCATAAACCAGACGTCTATGCCCAAAGGGGCTTCTGGCCAGCTCCCTAGT
GCCAACCCTGTACCCAAGCCAGAGGTGGTGAAGGGGGAGTCCACAGTAGGCCAATGCAATAGCA
CACAACTCTTTGGTCAGTTTCTCTTGAAACCAGTAAGCCGGCGGCCCTGGGATCTGATAAGTCA
GTTAGAAAGCTTTAACAAGGAGCTTCAGGAAGAGGAAGAAAGCCATGGTGTTAGCAGTGGGGGC
GATAGTGAAGACAGTGAGGCAGAACAGCCAGAGGACTGTGCTGACTCCAGTGCCAAGACCAGGG
GCCACCAGGAAACTAGAAGAGAACAGCGGCCTGCAGAGCTGGCACTGGGGGAAGCAGGGCCCCC
AGGAGGAAGACTTGGTGAGTCACAGAGTCGGAGTAAGGAACCCAAACCTGGCCACCCGTGTGCC
CGTTCACAGGCTCTGGGGCCATCACAGGAGGAAGACAGCAGAGGCGTTCCAGTCCAGTGGGGAC
ATGGAAACCTGTCTGCAGAGCAGAAAAGCCAGGAGGCTTTGAATGGGATGTGTGAGCGAGACAT
TAGCCCAAGGCCTGTGAGCAGGATTGCGCCGGTTGACACACAAGCAGCCTCTTTGTTCTGTCTG
GCAGAACCGAGAGGAAGTCAAGAACTCACCAAAGTCAACGATGCTTTAGGGTCTGTGGAGCTGG
GCAGAGAGACTCCCATAAGGGTGGATAATGGTGGGGACACCGAGGTCCTACCCTGTGTCCTGCC
GCCCCTTGCTGACAGATGTCGAGGACTCTCAACACCGAACTTTCCATCTTTAGAGCTCACACTG
GGACAAGAACAGCGTGCCTATAAATCAGAGTGTCAGGGTCTAGACAACACCGTGGAAGTCCTTC
CAAGTGAGTCTCTGCAGGAAAGGGCAGAGAGGATCCTGGGCATTGAGGTAGCCGTGGAGTCCCT
TCTGCCAGGTGCCAGGAGAACAGAACAGAGCCAGCTCCCCAAGCCTGGTACAAGTGCCTGCAGC
CCAAGATCATCCAGAGAGGACTCACAGCCCAGCTCGGCATCCCCAGAGGACCCCACAGTGGCCA
CTGATGCTTTCTATGGCAGGAGGAAGTGTGGCTGGACTGAGAGTCCTCTTTTTGTAGGAGAAAG
GGCCCCCCAGGCTGCTGTGTGCTCAGATGTGGATGGGTTCCCTACAAGCCAGGCCACCAGTCCT
GAGCCTGAGAAAAAGAAAGAGGCGAAACCACCCTTCAAGTCCACTCTGTTCCATTTCATGGAAA
AGTCCACAAATGTGGTGGGCCCTGAAAAGAGGCTCAGAAACTCTTCCAACGTAATCGAGAGCTC
ACAAGGAAAACTGGTGTCACTCCCTAAGAGGGCAGACTCAGCTCGCTTGGTCAGAATGAGGGAG
GTAAACTCCTTGTCTCAGATGAGGTGTCTGAGCTCCAAGAGTGCAGACTCCATGGAGGAGCCGG
ACCCCTTAAAGGTCATCAAGAGTTCAGCCTGGCCGTCAGAAGGCCTTACTTCCCCGAGTGGTAA
AGATCAGGCCTGGCAAGCAGAGTACCTGCCCTCTGTCTCTCAAAACGAAAACGGACACCCTGAA
GTGATAAGGGAGAAAATGTCAGACCAGGACTTGTGGTGTGCAGGTAAGGAGTTGAGCTGGAGGG
CAGAGGTTTGGTGTTAGTTTGGAGTCATGTGATCATAGAAGCATGGCGAGTTGGTGAGTACTCA
CCTGAGTGCTGGCAACAGTTTGATAGAATGATCCTTCACGCAGGCGTGACACACACTTGCCATC
TCAGTACTTAGGAATCTGACACAGGAAGAACTTGAAGGCCAGCCAGGGCTACATAGCAAGATAT
CGTCAATTAAAATTTTTAAGAAGAGGGTCTGGCAAGGTTGCCAGCAGGTGACTGAGCCCCATCT
CTGAGACCTGGGTAAAGGTCACAGGAGAGAATCCTGTCTACGGAGTTGTGGATAATTATTCACG
AGAATAATGAATACATTTAAAAAGTAAACTCGTTTTCAAAAAAGTACCTAGCTTCCTCAATTAA
GAATCAAGATCTTGCCACGTATTTTGAATGATTACGTCATTGGAATTGGTGAGGGAAGCAGCTA
CATAGAATTATTCTTATAAAGAGCTTCCCAGGCCTCTGAATGTGCTCCAGGCATGGGACGTGAG
AATGTGTCGCAGACACGCGCTTCCGCCGGCCTGGGCAGCTCAGTGCCTCATGTTGGAGACAGAA
CATTTCTCATCGCGTTCTCTTCCAGAATAATAGACGTCCATCCAAATGGCCCCGATGACTGTTC
TTTACTAACTTTCTTGTTTTTATTTTTGCTTTTTTGAGATGAGGTTTCTACATGTGTTCCAGGC
TAGTCTCAGACTTACGGAGATCCATCTTCCTCTGCCTTCTGAGTGCTGGGATTAAAGGTGGGAG
CCACCACACCCAGGCTTTTTTCTCTTTTAAGATTTTTTTTCATACAATGTATTCTGATTCGTTT
CCCCTCCCCCAACTCCTTCCAGATCCTTCCAACTTCCCAACTCATCCACATTCATTTATTTCTT
ATTTTATGAGTGTGGGTGTTTTCTCTGCATGCATGCTTTGTGTAGTACATCCATTCAGTACCTA
CAGAGGCCAGAGGAGGGCGTCCGCACCTCCTGGAACTAAAGTGGCAGACAGCTGTATAGGGATA
AAATACACAGAAAATCTGAAATATCTTAATAATTTTACATTTAAAGGTTACATGTTGAAGTGGT
AGTATTCTGGGCATGTTAAGTGAATATATTTTGGATATATTTGGTGAAATAAAGTATATTATTA
AAGATAATTTGTTTTATTGTACTTACCAGAAATTTTAAACTAACATTATATGACTCAGACTAGT
TTTGTTGGACCTAGCCTGCCTATGAAGTAAAGAACTTACTGTTCTAGAGCAGCGGTTCTCGGCC
TTCCTAATGCTTCAGCTTTCTAATACTTCTCTATGTTGTGGTGATCCCCAACCACAAGATTATT
TCATTGCTAATTTATAGCTCTTAATTTTGCTATGGTTATGAATCATAACTAAATATCAGGTATG
CAGGGTGGTCTTAGGCAACCCCTGTGAAAGGGGTCATTCAACCCCCAAAGGGGTTGTGACAGAC
CCAGTGTTCTAGAGAGTTCTTTACATGGCTCCTGGATTTGGGTCCTCAGCTTCAATTTTGGGTC
TTGGGATTGAGGGCCATTATGTGGTGGTGTCTCCAGCATATCTGGCACTGAGGAGACCAGTTCA
ATTCCAGTTGCCTGTGTGGTCTGAGGTTGTTTGGAGTGTGGCATTCTCCTCCATTATCCACCCT
CCACTGTATCCTCAGCACGCAAGAAGCAGCATTCCTTGAGCTCCGAGCTGTAACTGTCTTCTTG
TGTGGTCACATGGGCTGTTGCTAGGGGCAGTGTCAAGAGGTGTTAAGTCATGGGAGCTCTACGT
CCTTTAGCCAGGTGGGCCAGAGCAGTCAGTCCATCAGTGAGCAGGCTCAGTGGCACGTCTGAGT
GCCAGCCCTGTCCCTCCTGTGCTGCACAGTGCTCCCAACACAATCTTAGTTTTCACCATCACTG
TGCCTCGTATCCAGGTGTGGCCAGCCAGCTGCAGTGACACATGGTAAAACCTGAGGCTGCAGGA
GATGGGACAGACACCCATCATAGGATGTCACTTCCCAGGTGCATTTCAGAGGGTTGTTTTCTAT
AAAATCATACCAATCCTGCAGACTTTAAAAAAAATCATCTTCCAGGCTATGGTAAGCCTTGCTG
TTACTTTTTCTGTCCTCACTGAGGTTTTGACAGTAAGTGGGTAAGATGCTACTCTCTTTAGGAT
GCACATAGTGCTTGAGTGACCATGTATTGTATGCTAAGTATGATAATCACACTAATCAACATGT
CCATCAGCTCCTAGTCCCTTGGCACAGTTTAAGTGCACGAGCTCTGTTAACTATGTCCCCTGTA
ATGTGCTACCTCAAGGCAGGAGTTCACCTTACAGTTGCAACTTTGTACTCTTTCCACTGTCTCC
TCTCTGCCCTACACCCAGCTCCTAGAAACTACCATCCTATACTCTTTTACTACAGGGGTAACCT
AAAAGCAAACCCACATGTGACATCCCAGTGCTGTGCTCTCTTAGCTTAGCTGTGTCACTGTGAA
TGACAAGAGTGCTCCTTTTTGATGCTGATTCGTTGTGCAGACATTTGTTTGCAGAAAGAACGTT
TCTTCCCTCACTCTCTGTTGGCAGACGCTTGGGTGGTTCTACCTCCTGACATAACCAGTGCAGC
GCACATGGATGTCCAGACACCTGGGAGTGAGGTTGCTGGATTTTATAATAGTTCTATTTCTGTT
TATATTTTTTGAGAGATCTCTACATTTTAAAGGCTATCTTGTACTCTTACAGATTTTAGGACTG
GTAAGGCAGGGAACTCTGATGACAGAGGCGAGCCTCAGTCTCCAGGGCGCCAAGGGTCAGACTG
TCCAGGTCAACAGCATACATTTCCCATCCCAGTGGCAGTTTGGGATTCTTGTCCCTTTCTATGG
TGCTCCATTCAAGAAATTCAGGTCATCTGGGCTCAGTTTGAGCAGCCGGTTCTGATCCTGCCTG
TTGGCTGGTGGCAGCTGGAGACAGAAAAACTGTTCTTGTTAGCCATGTATTTGACAGTTCAGTT
CCCCAAGCCTCAGAGGGAGGGATTTGTTCATAAAAATGCTGTCATTCAGATTGAGGGGAGA

hide sequence

RefSeq Acc Id:

XM_039096446 ⟹ XP_038952374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,784,634 - 57,826,213 (-)	NCBI
mRatBN7.2	17	53,091,854 - 53,130,985 (-)	NCBI

RefSeq Acc Id:

XM_039096447 ⟹ XP_038952375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,784,634 - 57,826,011 (-)	NCBI
mRatBN7.2	17	53,091,854 - 53,130,756 (-)	NCBI

RefSeq Acc Id:

XM_039096448 ⟹ XP_038952376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,784,634 - 57,825,485 (-)	NCBI
mRatBN7.2	17	53,091,854 - 53,130,490 (-)	NCBI

RefSeq Acc Id:

XM_063276696 ⟹ XP_063132766

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	57,784,634 - 57,805,586 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414638	(Get FASTA)	NCBI Sequence Viewer
	XP_008770008	(Get FASTA)	NCBI Sequence Viewer
	XP_008770010	(Get FASTA)	NCBI Sequence Viewer
	XP_008770012	(Get FASTA)	NCBI Sequence Viewer
	XP_038952374	(Get FASTA)	NCBI Sequence Viewer
	XP_038952375	(Get FASTA)	NCBI Sequence Viewer
	XP_038952376	(Get FASTA)	NCBI Sequence Viewer
	XP_063132766	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87451	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035031.5

RefSeq Acc Id:

XP_008770008 ⟸ XM_008771786

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAQAHSLPIHVRESPWEVARRTEHVMKNALWEAELRMPTPAKWQDMTLESWKQPRKLGRQASDG
DGQKRSQERFEDLYQFVHGEHMLTSQNRKKSQSLPRALSPKSLNFTEIPVPLHDGHITGVPKVP
PYPPSCPPPLEPTRNLEKTSSSGPFPRPKFGKPLKTPCHGSQPQPRGEGGFQDHQHRDPRGCHP
TRSKDPGHELGMLDTGLEPPVYVPPPSYRSPPQHIPNPYLEDPIPRHVSSSQSQQQQLPEKPEA
DCLLPSGSLAARDLYNAMPGSPPPGPPPHPYPIATHGDSIQYIPFDDPRIRHIKLAQPPEFYEE
ARLEDTSYNSGFIATQEPALGKRQYNDALSAPRGPILPPVNERGSAFAHSSPQWLQGQLPMASE
PGGFPGQTEHHGMRGLTADVRDSKVESHASSPQPQSEGTCRTHTKLRKFETGIQSRKSSKKSNA
TIFCLVSVPVKSESLVPDTDTNNNDLKLGADKNHGLYQGPALEEQSLLSMSSTDLELQALMGSM
AWRRTSPRQVLGESEDGQTDDPRTLHLIKPRELRASGSWPGHQYRDQQTQTSFPEDSKSSQLLP
ATKPGEASNAALTPTCPDDTASEVHLHAALASSDPSQKPSVPHLRGQMSLSPSRNSAFSRTSST
INQTSMPKGASGQLPSANPVPKPEVVKGESTVGQCNSTQLFGQFLLKPVSRRPWDLISQLESFN
KELQEEEESHGVSSGGDSEDSEAEQPEDCADSSAKTRGHQETRREQRPAELALGEAGPPGGRLG
ESQSRSKEPKPGHPCARSQALGPSQEEDSRGVPVQWGHGNLSAEQKSQEALNGMCERDISPRPV
SRIAPVDTQAASLFCLAEPRGSQELTKVNDALGSVELGRETPIRVDNGGDTEVLPCVLPPLADR
CRGLSTPNFPSLELTLGQEQRAYKSECQGLDNTVEVLPSESLQERAERILGIEVAVESLLPGAR
RTEQSQLPKPGTSACSPRSSREDSQPSSASPEDPTVATDAFYGRRKCGWTESPLFVGERAPQAA
VCSDVDGFPTSQATSPEPEKKKEAKPPFKSTLFHFMEKSTNVVGPEKRLRNSSNVIESSQGKLV
SLPKRADSARLVRMREVNSLSQMRCLSSKSADSMEEPDPLKVIKSSAWPSEGLTSPSGKDQAWQ
AEYLPSVSQNENGHPEVIREKMSDQDLWCAGKELSWRAEVWC

hide sequence

RefSeq Acc Id:

XP_008770012 ⟸ XM_008771790

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAQAHSLPIHVRESPWEVARRTEHVMKNALWEAELRMPTPAKWQDMTLESWKQPRKLGRQASDG
DGQKRSQERFEDLYQFVHGEHMLTSQNRKKSQSLPRALSPKSLNFTEIPVPLHDGHITGVPKVP
PYPPSCPPPLEPTRNLEKTSSSGPFPRPKFGKPLKTPCHGSQPQPRGEGGFQDHQHRDPRGCHP
TRSKDPGHELGMLDTGLEPPVYVPPPSYRSPPQHIPNPYLEDPIPRHVSSSQSQQQQLPEKPEA
DCLLPSGSLAARDLYNAMPGSPPPGPPPHPYPIATHGDSIQYIPFDDPRIRHIKLAQPPEFYEE
ARLEDTSYNSGFIATQEPALGKRQYNDALSAPRGPILPPVNERGSAFAHSSPQWLQGQLPMASE
PGGFPGQTEHHGMRGLTADVRDSKVESHASSPQPQSEGTCRTHTKLRKFETGIQSRKSSKKSNA
TIFCLVSVPVKSESLVPDTDTNNNDLKLGADKNHGLYQGPALEEQSLLSMSSTDLELQALMGSM
AWRRTSPRQVLGESEDGQTDDPRTLHLIKPRELRASGSWPGHQYRDQQTQTSFPEDSKSSQLLP
ATKPGEASNAALTPTCPDDTASEVHLHAALASSDPSQKPSVPHLRGQMSLSPSRNSAFSRTSST
INQTSMPKGASGQLPSANPVPKPEVVKGESTVGQCNSTQLFGQFLLKPVSRRPWDLISQLESFN
KELQEEEESHGVSSGGDSEDSEAEQPEDCADSSAKTRGHQETRREQRPAELALGEAGPPGGRLG
ESQSRSKEPKPGHPCARSQALGPSQEEDSRGVPVQWGHGNLSAEQKSQEALNGMCERDISPRPV
SRIAPVDTQAASLFCLAEPRGSQELTKVNDALGSVELGRETPIRVDNGGDTEVLPCVLPPLADR
CRGLSTPNFPSLELTLGQEQRAYKSECQGLDNTVEVLPSESLQERAERILGIEVAVESLLPGAR
RTEQSQLPKPGTSACSPRSSREDSQPSSASPEDPTVATDAFYGRRKCGWTESPLFVGERAPQAA
VCSDVDGFPTSQATSPEPEKKKEAKPPFKSTLFHFMEKSTNVVGPEKRLRNSSNVIESSQGKLV
SLPKRADSARLVRMREVNSLSQMRCLSSKSADSMEEPDPLKVIKSSAWPSEGLTSPSGKDQAWQ
AEYLPSVSQNENGHPEVIREKMSDQDLWCAGKELSWRAEVWC

hide sequence

RefSeq Acc Id:

XP_008770010 ⟸ XM_008771788

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAQAHSLPIHVRESPWEVARRTEHVMKNALWEAELRMPTPAKWQDMTLESWKQPRKLGRQASDG
DGQKRSQERFEDLYQFVHGEHMLTSQNRKKSQSLPRALSPKSLNFTEIPVPLHDGHITGVPKVP
PYPPSCPPPLEPTRNLEKTSSSGPFPRPKFGKPLKTPCHGSQPQPRGEGGFQDHQHRDPRGCHP
TRSKDPGHELGMLDTGLEPPVYVPPPSYRSPPQHIPNPYLEDPIPRHVSSSQSQQQQLPEKPEA
DCLLPSGSLAARDLYNAMPGSPPPGPPPHPYPIATHGDSIQYIPFDDPRIRHIKLAQPPEFYEE
ARLEDTSYNSGFIATQEPALGKRQYNDALSAPRGPILPPVNERGSAFAHSSPQWLQGQLPMASE
PGGFPGQTEHHGMRGLTADVRDSKVESHASSPQPQSEGTCRTHTKLRKFETGIQSRKSSKKSNA
TIFCLVSVPVKSESLVPDTDTNNNDLKLGADKNHGLYQGPALEEQSLLSMSSTDLELQALMGSM
AWRRTSPRQVLGESEDGQTDDPRTLHLIKPRELRASGSWPGHQYRDQQTQTSFPEDSKSSQLLP
ATKPGEASNAALTPTCPDDTASEVHLHAALASSDPSQKPSVPHLRGQMSLSPSRNSAFSRTSST
INQTSMPKGASGQLPSANPVPKPEVVKGESTVGQCNSTQLFGQFLLKPVSRRPWDLISQLESFN
KELQEEEESHGVSSGGDSEDSEAEQPEDCADSSAKTRGHQETRREQRPAELALGEAGPPGGRLG
ESQSRSKEPKPGHPCARSQALGPSQEEDSRGVPVQWGHGNLSAEQKSQEALNGMCERDISPRPV
SRIAPVDTQAASLFCLAEPRGSQELTKVNDALGSVELGRETPIRVDNGGDTEVLPCVLPPLADR
CRGLSTPNFPSLELTLGQEQRAYKSECQGLDNTVEVLPSESLQERAERILGIEVAVESLLPGAR
RTEQSQLPKPGTSACSPRSSREDSQPSSASPEDPTVATDAFYGRRKCGWTESPLFVGERAPQAA
VCSDVDGFPTSQATSPEPEKKKEAKPPFKSTLFHFMEKSTNVVGPEKRLRNSSNVIESSQGKLV
SLPKRADSARLVRMREVNSLSQMRCLSSKSADSMEEPDPLKVIKSSAWPSEGLTSPSGKDQAWQ
AEYLPSVSQNENGHPEVIREKMSDQDLWCAGKELSWRAEVWC

hide sequence

Ensembl Acc Id:

ENSRNOP00000035031 ⟸ ENSRNOT00000033359

RefSeq Acc Id:	XP_038952374 ⟸ XM_039096446
- Peptide Label:	isoform X1
- UniProtKB:	F1M6T3 (UniProtKB/TrEMBL), A6K9F8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952375 ⟸ XM_039096447
- Peptide Label:	isoform X1
- UniProtKB:	F1M6T3 (UniProtKB/TrEMBL), A6K9F8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952376 ⟸ XM_039096448
- Peptide Label:	isoform X1
- UniProtKB:	F1M6T3 (UniProtKB/TrEMBL), A6K9F8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414638 ⟸ NM_001427709
- UniProtKB:	A6K9F8 (UniProtKB/TrEMBL), F1M6T3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132766 ⟸ XM_063276696
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M6T3-F1-model_v2	AlphaFold	F1M6T3	1-1331	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700539

Promoter ID:

EPDNEW_R11047

Type:

initiation region

Name:

Jcad_1

Description:

junctional cadherin 5 associated

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	55,709,728 - 55,709,788	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562037	AgrOrtholog
BioCyc Gene	G2FUF-9014	BioCyc
Ensembl Genes	ENSRNOG00000027938	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033359.6	UniProtKB/TrEMBL
InterPro	JCAD	UniProtKB/TrEMBL
NCBI Gene	498764	ENTREZGENE
PANTHER	JUNCTIONAL PROTEIN ASSOCIATED WITH CORONARY ARTERY DISEASE	UniProtKB/TrEMBL
	PTHR34757	UniProtKB/TrEMBL
Pfam	JCAD	UniProtKB/TrEMBL
PhenoGen	Jcad	PhenoGen
RatGTEx	ENSRNOG00000027938	RatGTEx
UniProt	A6K9F8	ENTREZGENE, UniProtKB/TrEMBL
	F1M6T3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-05-12	Jcad	junctional cadherin 5 associated	RGD1562037	similar to OTTHUMP00000046255	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1562037	similar to OTTHUMP00000046255	RGD1562037_predicted	similar to OTTHUMP00000046255 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562037_predicted	similar to OTTHUMP00000046255 (predicted)	LOC498764	similar to OTTHUMP00000046255	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498764	similar to OTTHUMP00000046255			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD