Prl2c1 (prolactin family 2, subfamily C, member 1) - Rat Genome Database

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Gene: Prl2c1 (prolactin family 2, subfamily C, member 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Prl2c1
Name: prolactin family 2, subfamily C, member 1
RGD ID: 1562878
Description: Predicted to enable hormone activity and prolactin receptor binding activity. Predicted to be involved in several processes, including female pregnancy; positive regulation of lactation; and positive regulation of receptor signaling pathway via JAK-STAT. Predicted to be active in extracellular space.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ghd4; growth hormone d4; LOC502122; RGD1562878; similar to OTTMUSP00000000600
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81737,089,507 - 37,097,827 (-)NCBIGRCr8
mRatBN7.21736,881,099 - 36,889,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1736,881,099 - 36,889,419 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1736,741,664 - 36,749,971 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01738,345,672 - 38,353,979 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01736,687,334 - 36,695,663 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01738,849,932 - 38,858,391 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1738,849,932 - 38,858,331 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01740,711,015 - 40,719,474 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41743,420,887 - 43,429,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1736,390,126 - 36,398,440 (-)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16897344   PMID:26697363   PMID:26862561  


Genomics

Variants

.
Variants in Prl2c1
65 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:87
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000059738
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172393042179524188Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2393042179524188Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172393042179524188Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat


Expression

RNA-SEQ Expression

endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
reproductive system
respiratory system
4 4 2 2 2 4 2 7 2

Sequence


Ensembl Acc Id: ENSRNOT00000059738   ⟹   ENSRNOP00000056493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1736,881,099 - 36,889,419 (-)Ensembl
Rnor_6.0 Ensembl1738,849,932 - 38,858,331 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119514   ⟹   ENSRNOP00000081386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1736,881,099 - 36,889,419 (-)Ensembl
RefSeq Acc Id: NM_001044271   ⟹   NP_001037736
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81737,089,507 - 37,097,827 (-)NCBI
mRatBN7.21736,881,099 - 36,889,419 (-)NCBI
Rnor_6.01738,849,932 - 38,858,391 (-)NCBI
Rnor_5.01740,711,015 - 40,719,474 (-)NCBI
RGSC_v3.41743,420,887 - 43,429,208 (-)RGD
Celera1736,390,126 - 36,398,440 (-)RGD
Sequence:
RefSeq Acc Id: XM_017600653   ⟹   XP_017456142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81737,089,507 - 37,097,767 (-)NCBI
mRatBN7.21736,881,099 - 36,889,359 (-)NCBI
Rnor_6.01738,849,932 - 38,858,331 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001037736 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456142 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABC59296 (Get FASTA)   NCBI Sequence Viewer  
  CDW51444 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056493.3
  ENSRNOP00000081386.1
RefSeq Acc Id: NP_001037736   ⟸   NM_001044271
- Peptide Label: precursor
- UniProtKB: Q1KZI0 (UniProtKB/TrEMBL),   F1LR82 (UniProtKB/TrEMBL),   A0A8I5ZRV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456142   ⟸   XM_017600653
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZRV4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056493   ⟸   ENSRNOT00000059738
Ensembl Acc Id: ENSRNOP00000081386   ⟸   ENSRNOT00000119514

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q1KZI0-F1-model_v2 AlphaFold Q1KZI0 1-227 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562878 AgrOrtholog
BioCyc Gene G2FUF-9474 BioCyc
Ensembl Genes ENSRNOG00000039058 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059738.5 UniProtKB/TrEMBL
  ENSRNOT00000119514.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Somatotropin UniProtKB/TrEMBL
  Somatotropin_CS UniProtKB/TrEMBL
KEGG Report rno:502122 UniProtKB/TrEMBL
NCBI Gene 502122 ENTREZGENE
PANTHER GROWTH HORMONE D22-RELATED UniProtKB/TrEMBL
  Somatotropin UniProtKB/TrEMBL
Pfam Hormone_1 UniProtKB/TrEMBL
PhenoGen Prl2c1 PhenoGen
PRINTS SOMATOTROPIN UniProtKB/TrEMBL
PROSITE SOMATOTROPIN_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000039058 RatGTEx
Superfamily-SCOP 4_helix_cytokine UniProtKB/TrEMBL
UniProt A0A8I5ZRV4 ENTREZGENE, UniProtKB/TrEMBL
  F1LR82 ENTREZGENE
  Q1KZI0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1LR82 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-07 Prl2c1  prolactin family 2, subfamily C, member 1  Prl2c1  Prolactin family 2, subfamily c, member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-05-04 Prl2c1  Prolactin family 2, subfamily c, member 1  RGD1562878_predicted  similar to OTTMUSP00000000600 (predicted)  Symbol and Name updated 1624237 APPROVED
2006-03-07 RGD1562878_predicted  similar to OTTMUSP00000000600 (predicted)  LOC502122  similar to OTTMUSP00000000600  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502122  similar to OTTMUSP00000000600      Symbol and Name status set to provisional 70820 PROVISIONAL