Carmil1 (capping protein regulator and myosin 1 linker 1) - Rat Genome Database

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Gene: Carmil1 (capping protein regulator and myosin 1 linker 1) Rattus norvegicus
Analyze
Symbol: Carmil1
Name: capping protein regulator and myosin 1 linker 1
RGD ID: 1306623
Description: Predicted to be involved in several processes, including actin filament network formation; plasma membrane bounded cell projection organization; and regulation of actin cytoskeleton organization. Predicted to be located in several cellular components, including cell leading edge; macropinosome; and nuclear speck. Predicted to be part of filamentous actin. Predicted to be active in lamellipodium and plasma membrane. Orthologous to human CARMIL1 (capping protein regulator and myosin 1 linker 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: F-actin-uncapping protein LRRC16A; leucine rich repeat containing 16; leucine rich repeat containing 16A; leucine-rich repeat-containing protein 16A; LOC306941; Lrrc16; Lrrc16a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21740,807,921 - 41,088,326 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1740,808,389 - 41,088,326 (+)Ensembl
Rnor_6.01743,050,282 - 43,339,403 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,050,789 - 43,339,403 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01744,916,362 - 45,196,987 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41747,923,987 - 48,206,590 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11747,915,609 - 48,164,927 (+)NCBI
Celera1740,440,272 - 40,720,033 (+)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-methoxyethanol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
calcitriol  (ISO)
captan  (ISO)
chloroprene  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
clothianidin  (ISO)
cobalt dichloride  (EXP)
crocidolite asbestos  (ISO)
cytarabine  (ISO)
decabromodiphenyl ether  (EXP)
deguelin  (ISO)
dichloroacetic acid  (ISO)
diuron  (EXP)
endosulfan  (EXP)
Erionite  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folpet  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
Triptolide  (ISO)
valproic acid  (ISO)

References

Additional References at PubMed
PMID:16054028   PMID:19199708   PMID:19503597   PMID:19846667   PMID:24318514   PMID:26578515  


Genomics

Comparative Map Data
Carmil1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21740,807,921 - 41,088,326 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1740,808,389 - 41,088,326 (+)Ensembl
Rnor_6.01743,050,282 - 43,339,403 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,050,789 - 43,339,403 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01744,916,362 - 45,196,987 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41747,923,987 - 48,206,590 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11747,915,609 - 48,164,927 (+)NCBI
Celera1740,440,272 - 40,720,033 (+)NCBICelera
Cytogenetic Map17p11NCBI
CARMIL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38625,279,374 - 25,620,530 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl625,279,078 - 25,620,530 (+)EnsemblGRCh38hg38GRCh38
GRCh37625,279,602 - 25,620,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36625,387,627 - 25,728,737 (+)NCBINCBI36hg18NCBI36
Build 34625,618,947 - 25,728,735NCBI
Celera626,506,841 - 26,847,962 (+)NCBI
Cytogenetic Map6p22.2NCBI
HuRef625,222,808 - 25,563,750 (+)NCBIHuRef
CHM1_1625,281,915 - 25,622,956 (+)NCBICHM1_1
Carmil1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391324,196,464 - 24,464,983 (-)NCBIGRCm39mm39
GRCm39 Ensembl1324,196,327 - 24,464,778 (-)Ensembl
GRCm381324,012,481 - 24,280,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1324,012,344 - 24,280,795 (-)EnsemblGRCm38mm10GRCm38
MGSCv371324,104,353 - 24,372,659 (-)NCBIGRCm37mm9NCBIm37
MGSCv361324,020,124 - 24,288,260 (-)NCBImm8
Celera1324,244,108 - 24,511,349 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
Carmil1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554831,463,805 - 1,770,520 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554831,463,856 - 1,770,798 (-)NCBIChiLan1.0ChiLan1.0
CARMIL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1625,440,972 - 25,781,027 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl625,441,682 - 25,780,092 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0625,114,221 - 25,454,984 (+)NCBIMhudiblu_PPA_v0panPan3
CARMIL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13523,268,438 - 23,581,794 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3523,268,723 - 23,581,403 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3523,235,876 - 23,527,314 (+)NCBI
ROS_Cfam_1.03523,385,384 - 23,697,506 (+)NCBI
ROS_Cfam_1.0 Ensembl3523,383,399 - 23,697,501 (+)Ensembl
UMICH_Zoey_3.13523,195,743 - 23,505,905 (+)NCBI
UNSW_CanFamBas_1.03523,244,683 - 23,557,494 (+)NCBI
UU_Cfam_GSD_1.03524,683,032 - 24,995,158 (+)NCBI
Carmil1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,988,229 - 2,216,964 (-)NCBI
SpeTri2.0NW_0049366711,404,595 - 1,632,916 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CARMIL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,036,739 - 20,353,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,036,430 - 20,353,431 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2721,336,649 - 21,653,380 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CARMIL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,637,416 - 46,979,061 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1746,635,199 - 46,978,932 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604425,210,038 - 25,552,979 (+)NCBIVero_WHO_p1.0
Carmil1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247561,446,633 - 1,751,043 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D17Got117  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21741,001,846 - 41,001,939 (+)MAPPERmRatBN7.2
Rnor_6.01743,248,758 - 43,248,850NCBIRnor6.0
Rnor_5.01745,109,902 - 45,109,994UniSTSRnor5.0
RGSC_v3.41748,120,004 - 48,120,096UniSTSRGSC3.4
Celera1740,633,499 - 40,633,591UniSTS
Cytogenetic Map17p11UniSTS
AI425970  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21741,087,976 - 41,088,068 (+)MAPPERmRatBN7.2
Rnor_6.01743,339,054 - 43,339,145NCBIRnor6.0
Rnor_5.01745,196,638 - 45,196,729UniSTSRnor5.0
RGSC_v3.41748,206,241 - 48,206,332UniSTSRGSC3.4
Celera1740,719,684 - 40,719,775UniSTS
Cytogenetic Map17p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:90
Interacting mature miRNAs:116
Transcripts:ENSRNOT00000059510
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 22 17 2 10 2 74 35 40 11
Low 1 21 39 38 9 38 8 10 1 8
Below cutoff 1 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000059510   ⟹   ENSRNOP00000056268
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,925,607 - 41,088,326 (+)Ensembl
Rnor_6.0 Ensembl1743,050,961 - 43,339,403 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080745   ⟹   ENSRNOP00000070264
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,808,389 - 41,088,326 (+)Ensembl
Rnor_6.0 Ensembl1743,050,789 - 43,339,402 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104932   ⟹   ENSRNOP00000095539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,808,389 - 41,087,952 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108358   ⟹   ENSRNOP00000085444
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,808,389 - 41,087,952 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117749   ⟹   ENSRNOP00000081294
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,808,389 - 41,087,952 (+)Ensembl
RefSeq Acc Id: NM_001191692   ⟹   NP_001178621
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,808,575 - 41,088,326 (+)NCBI
Rnor_6.01743,050,961 - 43,339,403 (+)NCBI
Rnor_5.01744,916,362 - 45,196,987 (+)NCBI
Celera1740,440,272 - 40,720,033 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771642   ⟹   XP_008769864
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,924 - 41,088,326 (+)NCBI
Rnor_6.01743,050,283 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771644   ⟹   XP_008769866
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,925 - 41,088,326 (+)NCBI
Rnor_6.01743,050,283 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771645   ⟹   XP_008769867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,922 - 41,088,326 (+)NCBI
Rnor_6.01743,050,282 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771650   ⟹   XP_008769872
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,923 - 41,081,317 (+)NCBI
Rnor_6.01743,050,283 - 43,332,347 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771651   ⟹   XP_008769873
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,923 - 41,081,295 (+)NCBI
Rnor_6.01743,050,283 - 43,332,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600536   ⟹   XP_017456025
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,923 - 41,088,326 (+)NCBI
Rnor_6.01743,050,283 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600537   ⟹   XP_017456026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,923 - 41,088,326 (+)NCBI
Rnor_6.01743,050,283 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600538   ⟹   XP_017456027
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,924 - 41,088,326 (+)NCBI
Rnor_6.01743,050,283 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600539   ⟹   XP_017456028
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,922 - 41,088,326 (+)NCBI
Rnor_6.01743,050,282 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600540   ⟹   XP_017456029
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,923 - 41,088,326 (+)NCBI
Rnor_6.01743,050,283 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600541   ⟹   XP_017456030
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,925 - 41,088,326 (+)NCBI
Rnor_6.01743,050,284 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600542   ⟹   XP_017456031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,921 - 41,088,326 (+)NCBI
Rnor_6.01743,050,282 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600543   ⟹   XP_017456032
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,923 - 41,087,446 (+)NCBI
Rnor_6.01743,050,283 - 43,338,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600544   ⟹   XP_017456033
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,922 - 41,088,326 (+)NCBI
Rnor_6.01743,050,283 - 43,339,403 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600546   ⟹   XP_017456035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,921 - 41,081,317 (+)NCBI
Rnor_6.01743,050,282 - 43,332,347 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095697   ⟹   XP_038951625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,890,144 - 41,088,326 (+)NCBI
RefSeq Acc Id: XM_039095698   ⟹   XP_038951626
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,925 - 41,087,446 (+)NCBI
RefSeq Acc Id: XM_039095699   ⟹   XP_038951627
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,921 - 41,087,446 (+)NCBI
RefSeq Acc Id: XM_039095700   ⟹   XP_038951628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,922 - 41,087,446 (+)NCBI
RefSeq Acc Id: XM_039095701   ⟹   XP_038951629
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,807,922 - 41,081,317 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001178621   ⟸   NM_001191692
- UniProtKB: F1M0N7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769867   ⟸   XM_008771645
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008769864   ⟸   XM_008771642
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008769866   ⟸   XM_008771644
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008769872   ⟸   XM_008771650
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_008769873   ⟸   XM_008771651
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017456028   ⟸   XM_017600539
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017456031   ⟸   XM_017600542
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017456035   ⟸   XM_017600546
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017456025   ⟸   XM_017600536
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456026   ⟸   XM_017600537
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456029   ⟸   XM_017600540
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017456033   ⟸   XM_017600544
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017456027   ⟸   XM_017600538
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017456032   ⟸   XM_017600543
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017456030   ⟸   XM_017600541
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSRNOP00000070264   ⟸   ENSRNOT00000080745
RefSeq Acc Id: ENSRNOP00000056268   ⟸   ENSRNOT00000059510
RefSeq Acc Id: XP_038951627   ⟸   XM_039095699
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038951628   ⟸   XM_039095700
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038951629   ⟸   XM_039095701
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038951626   ⟸   XM_039095698
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038951625   ⟸   XM_039095697
- Peptide Label: isoform X11
RefSeq Acc Id: ENSRNOP00000081294   ⟸   ENSRNOT00000117749
RefSeq Acc Id: ENSRNOP00000085444   ⟸   ENSRNOT00000108358
RefSeq Acc Id: ENSRNOP00000095539   ⟸   ENSRNOT00000104932
Protein Domains
Carm_PH   CARMIL_C

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700454
Promoter ID:EPDNEW_R10971
Type:single initiation site
Name:Carmil1_1
Description:capping protein regulator and myosin 1 linker 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01743,050,791 - 43,050,851EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
17 43276946 43276947 G A snv CDR, WKY/N (2020), ACI/EurMcwi (MCW), Buf/N (MCW), BUF/N (2020), WN/N (2020), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), M520/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/EurMcwi (RGD), F344/NCrl (RGD), LE/Stm (RGD), LEW/Crl (RGD), LEW/NCrlBR (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), MNS/Gib (RGD), SBH/Ygl (RGD), SR/JrHsd (RGD), SS/Jr (RGD), SS/JrHsdMcwi (RGD), WAG/Rij (RGD), WKY/NCrl (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), CDS


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
17 41029970 41029971 G A snv ACI/EurMcwi (2019), WN/N (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306623 AgrOrtholog
BioCyc Gene G2FUF-9405 BioCyc
Ensembl Genes ENSRNOG00000016576 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000056268 UniProtKB/TrEMBL
  ENSRNOP00000070264 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000081294 ENTREZGENE
  ENSRNOP00000085444 ENTREZGENE
  ENSRNOP00000095539 ENTREZGENE
Ensembl Transcript ENSRNOT00000059510 UniProtKB/TrEMBL
  ENSRNOT00000080745 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000104932 ENTREZGENE
  ENSRNOT00000108358 ENTREZGENE
  ENSRNOT00000117749 ENTREZGENE
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro CARMIL1 UniProtKB/TrEMBL
  CARMIL_C UniProtKB/TrEMBL
  CARMIL_PH UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
KEGG Report rno:306941 UniProtKB/TrEMBL
NCBI Gene 306941 ENTREZGENE
PANTHER PTHR24112:SF39 UniProtKB/TrEMBL
Pfam Carm_PH UniProtKB/TrEMBL
  CARMIL_C UniProtKB/TrEMBL
  LRR_6 UniProtKB/TrEMBL
PhenoGen Carmil1 PhenoGen
UniProt A0A0G2JXG7_RAT UniProtKB/TrEMBL
  F1M0N7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-22 Carmil1  capping protein regulator and myosin 1 linker 1  Lrrc16a  leucine rich repeat containing 16A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Lrrc16a  leucine rich repeat containing 16A  Lrrc16  leucine rich repeat containing 16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-14 Lrrc16  leucine rich repeat containing 16  Lrrc16_predicted  leucine rich repeat containing 16 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Lrrc16_predicted  leucine rich repeat containing 16 (predicted)      Symbol and Name status set to approved 70820 APPROVED