Epdr1 (ependymin related 1) - Rat Genome Database

Name: Epdr1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Epdr1 (ependymin related 1) Rattus norvegicus

Analyze

Symbol:

Epdr1

Name:

ependymin related 1

RGD ID:

1359161

Description:

Predicted to enable ganglioside GM1 binding activity; identical protein binding activity; and phospholipid binding activity. Predicted to be involved in myofibroblast contraction. Predicted to be located in extracellular region. Predicted to be active in lysosome. Orthologous to human EPDR1 (ependymin related 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Epdr2; ependymin related protein 1; ependymin related protein 1 (zebrafish); ependymin related protein 2; ependymin related protein 2 (zebrafish); mammalian ependymin-related protein 1; MERP-1; MERP2; MGC94579; upregulated in colorectal cancer gene 1 protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EPDR1 (ependymin related 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Epdr1 (ependymin related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Epdr1 (ependymin related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EPDR1 (ependymin related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EPDR1 (ependymin related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Epdr1 (ependymin related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EPDR1 (ependymin related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EPDR1 (ependymin related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Epdr1 (ependymin related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PGAM2 (phosphoglycerate mutase 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	EPDR1 (ependymin related 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Epdr1 (ependymin related 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	epdr1 (ependymin related 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	epdr1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	45,333,932 - 45,358,597 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	45,333,956 - 45,358,594 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	47,410,508 - 47,435,184 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	52,169,667 - 52,194,337 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	46,660,063 - 46,684,725 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	47,397,558 - 47,422,183 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	47,397,558 - 47,422,182 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	56,066,896 - 56,091,673 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	53,135,000 - 53,160,954 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	53,137,840 - 53,163,794 (+)	NCBI
Celera	17	51,170,240 - 51,195,039 (-)	NCBI		Celera
Cytogenetic Map	17	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

angle-closure glaucoma (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetylsalicylic acid (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (EXP,ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (EXP)

cadmium dichloride (ISO)

carbon nanotube (ISO)

choline (ISO)

cisplatin (ISO)

clothianidin (ISO)

dibutyl phthalate (EXP)

diethyl phthalate (EXP)

diethylstilbestrol (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

dorsomorphin (ISO)

folic acid (ISO)

furan (EXP)

L-methionine (ISO)

manganese(II) chloride (EXP)

mercury dibromide (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

p-chloromercuribenzoic acid (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-matrix adhesion (IEA)

myofibroblast contraction (ISO)

Cellular Component

extracellular region (IEA,ISO)

lysosomal lumen (IEA)

lysosome (IBA,ISO)

Molecular Function

calcium ion binding (IEA)

ganglioside GM1 binding (ISO)

identical protein binding (ISO)

phospholipid binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification and characterization of a novel family of mammalian ependymin-related proteins (MERPs) in hematopoietic, nonhematopoietic, and malignant tissues.	Apostolopoulos J, etal., DNA Cell Biol 2001 Oct;20(10):625-35.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	MERP1: a mammalian ependymin-related protein gene differentially expressed in hematopoietic cells.	Gregorio-King CC, etal., Gene 2002 Mar 20;286(2):249-57.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:16954209	PMID:23376485	PMID:24006456	PMID:29514215

Genomics

Comparative Map Data

Epdr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	45,333,932 - 45,358,597 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	45,333,956 - 45,358,594 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	47,410,508 - 47,435,184 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	52,169,667 - 52,194,337 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	46,660,063 - 46,684,725 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	47,397,558 - 47,422,183 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	47,397,558 - 47,422,182 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	56,066,896 - 56,091,673 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	53,135,000 - 53,160,954 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	53,137,840 - 53,163,794 (+)	NCBI
Celera	17	51,170,240 - 51,195,039 (-)	NCBI		Celera
Cytogenetic Map	17	q11	NCBI

EPDR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	37,920,640 - 37,951,936 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	37,920,640 - 37,951,936 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	37,960,242 - 37,991,538 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	37,926,688 - 37,958,068 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	37,733,402 - 37,764,779	NCBI
Celera	7	37,944,872 - 37,976,255 (+)	NCBI		Celera
Cytogenetic Map	7	p14.1	NCBI
HuRef	7	37,840,492 - 37,871,928 (+)	NCBI		HuRef
CHM1_1	7	37,960,119 - 37,991,496 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	38,061,675 - 38,093,041 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	37,998,058 - 38,029,442 (+)	NCBI

Epdr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	19,775,878 - 19,804,000 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	19,775,876 - 19,804,097 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	19,591,708 - 19,619,830 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	19,591,706 - 19,619,927 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	19,683,577 - 19,711,699 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	19,599,171 - 19,627,268 (-)	NCBI		MGSCv36	mm8
MGSCv36	13	18,997,029 - 19,025,127 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	13	A2	NCBI
cM Map	13	6.97	NCBI

Epdr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	5,612,270 - 5,650,661 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	5,612,589 - 5,650,222 (-)	NCBI	ChiLan1.0	ChiLan1.0

EPDR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	7	91,076,129 - 91,107,446 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	38,556,734 - 38,588,059 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	38,777,919 - 38,809,208 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

EPDR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	11,989,898 - 12,013,017 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	11,990,936 - 11,992,596 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	11,631,802 - 11,658,022 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	12,258,672 - 12,284,875 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	12,258,696 - 12,284,626 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	12,076,223 - 12,102,618 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	11,996,122 - 12,022,525 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	12,223,748 - 12,250,000 (-)	NCBI		UU_Cfam_GSD_1.0

Epdr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	94,058,493 - 94,084,987 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	13,270,241 - 13,296,916 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936478	13,270,227 - 13,296,711 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EPDR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	108,418,041 - 108,447,171 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	108,417,997 - 108,447,180 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	119,465,496 - 119,468,550 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EPDR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	20,564,908 - 20,596,277 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	20,561,675 - 20,596,273 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666062	1,746,444 - 1,777,961 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Epdr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	23,302,991 - 23,329,654 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	23,303,184 - 23,330,124 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Epdr1
65 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	177
Count of miRNA genes:	131
Interacting mature miRNAs:	157
Transcripts:	ENSRNOT00000025674
Prediction methods:	Miranda, Pita, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
7394837	Memor18	Memory QTL 18			exploratory behavior trait (VT:0010471)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	17	18640182	63640182	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22454924	50909196	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	57246843	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27027949	56836890	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27027949	60463643	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	27389946	53481766	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	31368391	62109574	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
2313854	Bp343	Blood pressure QTL 343	3.9		life span trait (VT:0005372)	age at time of death (CMO:0001193)	17	31990784	50909196	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	35837085	69599340	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	0.00000071	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
631497	Bp98	Blood pressure QTL 98	3.66		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	41354651	60463643	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	17	42073160	69599340	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	42073160	69599340	Rat

Markers in Region

D17Wox29

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	45,332,057 - 45,332,213 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	47,395,650 - 47,395,805	NCBI	Rnor6.0
Rnor_5.0	17	56,093,426 - 56,093,581	UniSTS	Rnor5.0
RGSC_v3.4	17	53,133,092 - 53,133,247	UniSTS	RGSC3.4
Celera	17	51,196,792 - 51,196,947	UniSTS
Cytogenetic Map	17	q11	UniSTS

RH128255

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	45,358,244 - 45,358,433 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	47,421,835 - 47,422,023	NCBI	Rnor6.0
Rnor_5.0	17	56,067,056 - 56,067,244	UniSTS	Rnor5.0
RGSC_v3.4	17	53,160,606 - 53,160,794	UniSTS	RGSC3.4
Celera	17	51,170,400 - 51,170,588	UniSTS
Cytogenetic Map	17	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		31	12	10	2	10	8	11	66		8	3	8
Low	3	12	29	15	17	15			8	28	33	8
Below cutoff			11	11		11				7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001402437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000085923 ⟹ ENSRNOP00000073174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	45,333,965 - 45,358,594 (+)	Ensembl
Rnor_6.0 Ensembl	17	47,397,558 - 47,422,182 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113320 ⟹ ENSRNOP00000090481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	45,333,956 - 45,358,591 (+)	Ensembl

RefSeq Acc Id:

NM_001007625 ⟹ NP_001007626

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,333,932 - 45,358,597 (+)	NCBI
Rnor_6.0	17	47,397,558 - 47,422,183 (+)	NCBI
Rnor_5.0	17	56,066,896 - 56,091,673 (-)	NCBI
RGSC_v3.4	17	53,135,000 - 53,160,954 (+)	RGD
Celera	17	51,170,240 - 51,195,039 (-)	RGD

Sequence:

show sequence

CTCTGGGCGATTCACACACGGCTACCCCAGACTCGGACCCCCAAGCCGGAAGCCTCTAAAACCG
AAAATTGGAAAATCGGAAAATCAGGAGAGGCCAGGGCTCCTGAGCTGGTCCCAGAGCACATCTT
CCACCAGCGCTCAGACAACGCGCGTGACTCTCCCACGCCGGGCCTCGGCTCCCTCCCAGGTTTG
GCTGACCCGGAGGGCCGCGAATCACGATGCTCACACGCGCTCCCCGCCGCCTGGTCCAGGGGCC
CCGGGAGACCTGGCTGCTTGGCGGCCTCTGGGTCTGGATATTGTGCGGCCTGGGGATGGCGGGC
TCCCCGGGAACCCCGCAGCCATGCCAGGCGCCCCAGCAGTGGGAGGGACGTCAGGTTCTGTACC
AGCAGAGCAGCGGGCACAACAGCCGCGCCCTGGTGTCCTACGATGGTCTCAACCAGCGCGTGCG
GGTGCTGGACGAAAGGAAGGCGCTGATCCCCTGCAAGAGATTATTTGAATACATTTTACTCTAT
AAGGATGGAGTGATGTTTCAGATTGAACAAGCCACCAAACTGTGTGCAAAGATACCCTTGGCAG
AACCCTGGGATCCTCTCGACATTCCCCAGAATTCTACCTTTGAAGATCAGTACTCTATCGGAGG
GCCTCAGGAGCAGATCATGGTCCAGGAATGGTCTGACAGGAGGACAGCCAGATCCTATGAAACC
TGGATTGGCGTTTATACAGCCAAGGATTGCTACCCGGTCCAGGAGACCTTCATTAGGAACTACA
CTGTGGTCCTGTCCACTCGGTTCTTTGATGTGCAGTTGGGCATTAAAGACCCCTCTGTGTTCAC
CCCACCAAGCACGTGCCAGACAGCACAGCCAGAGAAGATGAAAGAGAACTGCTCCCTGTGAATT
TCCATGAGCGGAAGCCACGACCTCAGCTCTTAGGGACTTTGTGTGGAAATGGACTAGAGGCCAG
TTGGAAAGCAACTCGTCACGAGAAGCAAAGCTAGTTTTAGGAAGATAAACCCTATGTGGACTTG
CTTGTCATCTGACTGTGGCTGCTCAGCTCTATTTTTGGAAGGAACCTGGGTTATCCTTTCTGTG
TGCAGGTGTGTAGTCAGTGCTGTAGGGTAGGACGGGGTGAAGGTGGGGTCGGCACAAGGAGTTT
GCCTCTGCAGAGTGAACCTTTTATTATTGCCAATAAGATTGAAAGTGATAATAAGATATAGTAT
AATTTTTTTCAGTTCTCTCCTTACAAAGAAAGTCCCTTGCTTGTGTGCACTAGGGTAGTGACAG
TTCCCACTGACCCCACACCTGCCTCTGGCTACTATGAGATGACCCTTTAAGATTCTTTCCAAGC
TTAAATTTTGTCACATGGCCCACCGGATGTAGATATTCTGCAAGGAAGTAGAAACTTGTAATGC
AAAGCAATGTTGCCTCTGAAGGGAAAAGAAGTTTTAAGCGGGAGGCTTAGACAATCTTAGTATC
TTCATGTGAGATGAAGTCCGAGCCGTGTGTGGTGCTTTGTGTGCAAGAGTACTGACTGCTGTGC
TGAAACTATGTCTTTTCTAGCGGGCAAACAGGCTTGCAAAACAGCACTGAATTGGGAGGCCCCC
AAGTAAGGCCTAGGATTCTCTGCTACTCTAATCCTTTAAGTAGTAAATGCACTAGGCTAATAGC
TCTCGCCTTGCCTTTCTGGAAACTCTCTGTCTATATGACTACTGCTCACGCTTCCAACATCAGC
TCACATGTGCCCCCTGTGAGCTGCTCCAATGCCTGAATTCATTGCACCTTACAGCTTGGCATGC
CTTGCTCACAATACTCAGTATGCTGCGTGAGGATTTCCTGATTACTGGAAACTAACCTCTGTTA
TCCTGGGTAAGAATCCCTTGAGTTACGGGTATCGTGTTCTGTTTACTTTAATATCTCCAGCACC
AAGCAAGTGCCTGGCACGTAGTCCGTGCCCCAAACATTTGCAGAGAGGAGCTCATCAGCTCTGT
CAGTGTTTAGTTTTCTCATCTATTAAACAGGGTTGGTTTTTCTGGTTGCTAGGGAGACTTGTAC
TAATGCAACCTACTGTTCTAGATTCTTTATCACCGTGTTTCATTTGACCACGTATCACCTTTTG
TTATCAAGAGAAATGTGTGAAGCTTGCTTTATGCTGTAGCCATCTATATTGTAATTTATCTCTA
TACAATTAAACAAATTTATTGACACCCTAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001402437 ⟹ NP_001389366

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	45,333,932 - 45,358,597 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007626	(Get FASTA)	NCBI Sequence Viewer
	NP_001389366	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83701	(Get FASTA)	NCBI Sequence Viewer
	EDL84515	(Get FASTA)	NCBI Sequence Viewer
	Q5XII0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001007626 ⟸ NM_001007625
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q5XII0 (UniProtKB/Swiss-Prot), A6KN47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLTRAPRRLVQGPRETWLLGGLWVWILCGLGMAGSPGTPQPCQAPQQWEGRQVLYQQSSGHNSR ALVSYDGLNQRVRVLDERKALIPCKRLFEYILLYKDGVMFQIEQATKLCAKIPLAEPWDPLDIP QNSTFEDQYSIGGPQEQIMVQEWSDRRTARSYETWIGVYTAKDCYPVQETFIRNYTVVLSTRFF DVQLGIKDPSVFTPPSTCQTAQPEKMKENCSL hide sequence

RefSeq Acc Id:

ENSRNOP00000073174 ⟸ ENSRNOT00000085923

RefSeq Acc Id:

ENSRNOP00000090481 ⟸ ENSRNOT00000113320

RefSeq Acc Id:	NP_001389366 ⟸ NM_001402437
- Peptide Label:	isoform 2 precursor
- UniProtKB:	A0A8I6ADM5 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XII0-F1-model_v2	AlphaFold	Q5XII0	1-224	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359161	AgrOrtholog
BioCyc Gene	G2FUF-9146	BioCyc
Ensembl Genes	ENSRNOG00000060141	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000073174	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000090481	ENTREZGENE
	ENSRNOP00000090481.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000085923	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000113320	ENTREZGENE
	ENSRNOT00000113320.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7190104	IMAGE-MGC_LOAD
InterPro	Ependymin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:291180	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94579	IMAGE-MGC_LOAD
NCBI Gene	291180	ENTREZGENE
PANTHER	MAMMALIAN EPENDYMIN-RELATED PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10697	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ependymin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Epdr1	PhenoGen
PRINTS	EPENDYMIN	UniProtKB/Swiss-Prot
SMART	EPEND	UniProtKB/Swiss-Prot
UniProt	A0A8I6ADM5	ENTREZGENE, UniProtKB/TrEMBL
	A6KN47	ENTREZGENE, UniProtKB/TrEMBL
	EPDR1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-07	Epdr1	ependymin related 1	Epdr1	ependymin related protein 1 (zebrafish)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Epdr1	ependymin related protein 1 (zebrafish)	Epdr2	ependymin related protein 2 (zebrafish)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Epdr2	ependymin related protein 2 (zebrafish)		ependymin related protein 2	Name updated	1299863	APPROVED
2005-07-29	Epdr2	ependymin related protein 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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