Foxq1 (forkhead box Q1) - Rat Genome Database

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Gene: Foxq1 (forkhead box Q1) Rattus norvegicus
Analyze
Symbol: Foxq1
Name: forkhead box Q1
RGD ID: 621572
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including cell differentiation; negative regulation of neuron apoptotic process; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within hair follicle morphogenesis. Predicted to be located in nucleus. Orthologous to human FOXQ1 (forkhead box Q1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: VALIDATED
Previously known as: forkhead box protein Q1; hepatocyte nuclear factor 3 forkhead homolog 1; Hfh-1; Hfh1; HNF-3/forkhead homolog-1; HNF-3/forkhead-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81733,121,454 - 33,124,087 (-)NCBIGRCr8
mRatBN7.21732,912,744 - 32,915,377 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1732,912,744 - 32,915,377 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1732,914,460 - 32,915,008 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1732,760,502 - 32,763,135 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01734,364,329 - 34,366,962 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01732,756,308 - 32,758,941 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01734,224,308 - 34,226,941 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1734,224,818 - 34,226,453 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01736,108,677 - 36,111,310 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41739,332,906 - 39,334,655 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11739,335,746 - 39,337,496 (-)NCBI
Celera1732,462,463 - 32,465,096 (-)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetaldehyde  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antimonite  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chloroprene  (EXP,ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP,ISO)
diallyl trisulfide  (ISO)
dibutyl phthalate  (EXP,ISO)
dimethylarsinic acid  (EXP)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP)
fenofibrate  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
inulin  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
mifepristone  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (EXP)
nickel dichloride  (EXP)
nitrofen  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
ranitidine  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sotorasib  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
trametinib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Identification of nine tissue-specific transcription factors of the hepatocyte nuclear factor 3/forkhead DNA-binding-domain family. Clevidence DE, etal., Proc Natl Acad Sci U S A 1993 May 1;90(9):3948-52.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10896677   PMID:11309849   PMID:12477932  


Genomics

Comparative Map Data
Foxq1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81733,121,454 - 33,124,087 (-)NCBIGRCr8
mRatBN7.21732,912,744 - 32,915,377 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1732,912,744 - 32,915,377 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1732,914,460 - 32,915,008 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1732,760,502 - 32,763,135 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01734,364,329 - 34,366,962 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01732,756,308 - 32,758,941 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01734,224,308 - 34,226,941 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1734,224,818 - 34,226,453 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01736,108,677 - 36,111,310 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41739,332,906 - 39,334,655 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11739,335,746 - 39,337,496 (-)NCBI
Celera1732,462,463 - 32,465,096 (-)NCBICelera
Cytogenetic Map17p12NCBI
FOXQ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3861,312,098 - 1,314,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl61,312,098 - 1,314,758 (+)EnsemblGRCh38hg38GRCh38
GRCh3761,312,333 - 1,314,993 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3661,257,675 - 1,259,993 (+)NCBINCBI36Build 36hg18NCBI36
Build 3461,257,674 - 1,259,981NCBI
Celera62,541,803 - 2,544,121 (+)NCBICelera
Cytogenetic Map6p25.3NCBI
HuRef61,184,067 - 1,186,513 (+)NCBIHuRef
CHM1_161,314,768 - 1,317,086 (+)NCBICHM1_1
T2T-CHM13v2.061,175,612 - 1,178,272 (+)NCBIT2T-CHM13v2.0
Foxq1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391331,742,153 - 31,744,959 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1331,740,117 - 31,744,959 (+)EnsemblGRCm39 Ensembl
GRCm381331,558,170 - 31,560,976 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1331,556,134 - 31,560,976 (+)EnsemblGRCm38mm10GRCm38
MGSCv371331,650,039 - 31,652,845 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361331,565,902 - 31,567,935 (+)NCBIMGSCv36mm8
Celera1331,770,932 - 31,773,738 (+)NCBICelera
Cytogenetic Map13A3.2NCBI
cM Map1313.46NCBI
Foxq1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546511,802,947 - 11,803,381 (-)NCBIChiLan1.0ChiLan1.0
FOXQ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2515,929,875 - 15,932,677 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1611,926,497 - 11,928,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v061,134,672 - 1,137,323 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FOXQ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha351,765,832 - 1,767,751 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0351,712,280 - 1,714,198 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1351,687,881 - 1,689,801 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0351,708,373 - 1,710,275 (+)NCBIUNSW_CanFamBas_1.0
Foxq1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494624,159,597 - 24,162,251 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366332,459,047 - 2,460,260 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366332,458,473 - 2,460,990 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXQ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7664,373 - 665,563 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17664,360 - 666,401 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27864,128 - 866,825 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXQ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11770,824,812 - 70,827,737 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1770,826,264 - 70,827,478 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660441,256,352 - 1,258,997 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxq1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475623,269,235 - 23,271,802 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475623,265,721 - 23,271,954 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Foxq1
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:89
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000039482
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172702794936146731Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat

Markers in Region
RH143264  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21732,913,331 - 32,913,565 (+)MAPPERmRatBN7.2
Rnor_6.01734,224,896 - 34,225,129NCBIRnor6.0
Rnor_5.01736,109,265 - 36,109,498UniSTSRnor5.0
RGSC_v3.41739,332,984 - 39,333,217UniSTSRGSC3.4
Celera1732,463,051 - 32,463,284UniSTS
RH 3.4 Map17376.6UniSTS
Cytogenetic Map17p14-p12UniSTS
Hfh1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21732,914,212 - 32,914,315 (+)MAPPERmRatBN7.2
Rnor_6.01734,225,777 - 34,225,879NCBIRnor6.0
Rnor_5.01736,110,146 - 36,110,248UniSTSRnor5.0
RGSC_v3.41739,333,865 - 39,333,967UniSTSRGSC3.4
Celera1732,463,932 - 32,464,034UniSTS
Cytogenetic Map17p14-p12UniSTS
Hfh1l  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21732,914,545 - 32,914,710 (+)MAPPERmRatBN7.2
Rnor_6.01734,226,110 - 34,226,274NCBIRnor6.0
Rnor_5.01736,110,479 - 36,110,643UniSTSRnor5.0
RGSC_v3.41739,334,198 - 39,334,362UniSTSRGSC3.4
Celera1732,464,265 - 32,464,429UniSTS
Cytogenetic Map17p14-p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 13 3
Low 3 2 23 21 2 21 74 22 37 8
Below cutoff 26 25 17 13 17 3 4 3 3

Sequence


RefSeq Acc Id: ENSRNOT00000039482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1732,914,460 - 32,915,008 (+)Ensembl
Rnor_6.0 Ensembl1734,224,818 - 34,226,453 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109136   ⟹   ENSRNOP00000077510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1732,912,744 - 32,915,377 (-)Ensembl
RefSeq Acc Id: NM_022858   ⟹   NP_074049
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81733,121,454 - 33,124,087 (-)NCBI
mRatBN7.21732,912,744 - 32,915,377 (-)NCBI
Rnor_6.01734,224,308 - 34,226,941 (-)NCBI
Rnor_5.01736,108,677 - 36,111,310 (-)NCBI
RGSC_v3.41739,332,906 - 39,334,655 (-)RGD
Celera1732,462,463 - 32,465,096 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_074049 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA74561 (Get FASTA)   NCBI Sequence Viewer  
  AAI61861 (Get FASTA)   NCBI Sequence Viewer  
  EDL98355 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000077510
  ENSRNOP00000077510.1
GenBank Protein Q63244 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_074049   ⟸   NM_022858
- UniProtKB: Q63244 (UniProtKB/Swiss-Prot),   A0A8I5Y7M5 (UniProtKB/TrEMBL),   A6J7K5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000077510   ⟸   ENSRNOT00000109136
Protein Domains
Fork-head

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63244-F1-model_v2 AlphaFold Q63244 1-399 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621572 AgrOrtholog
BioCyc Gene G2FUF-9553 BioCyc
Ensembl Genes ENSRNOG00000021752 Ensembl
  ENSRNOG00000062314 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000109136 ENTREZGENE
  ENSRNOT00000109136.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FH_FOXQ1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fork_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64826 UniProtKB/TrEMBL
NCBI Gene 64826 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN Q1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Foxq1 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000021752 RatGTEx
  ENSRNOG00000062314 RatGTEx
SMART SM00339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y7M5 ENTREZGENE, UniProtKB/TrEMBL
  A6J7K5 ENTREZGENE, UniProtKB/TrEMBL
  FOXQ1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Foxq1  forkhead box Q1    HNF-3/forkhead homolog-1  Name updated 1299863 APPROVED
2004-09-10 Foxq1  HNF-3/forkhead homolog-1  Hfh1    Symbol and Name updated 1299863 APPROVED
2002-08-07 Hfh1  HNF-3/forkhead homolog-1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains a DNA-binding-domain 632667