Cmah (cytidine monophospho-N-acetylneuraminic acid hydroxylase) - Rat Genome Database

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Gene: Cmah (cytidine monophospho-N-acetylneuraminic acid hydroxylase) Rattus norvegicus
Analyze
Symbol: Cmah (Ensembl: Cmahp)
Name: cytidine monophospho-N-acetylneuraminic acid hydroxylase (Ensembl:cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene)
RGD ID: 1311930
Description: Predicted to enable CMP-N-acetylneuraminate monooxygenase activity. Predicted to be involved in CMP-N-acetylneuraminate metabolic process and regulation of Wnt signaling pathway. Predicted to be located in cytoskeleton; membrane; and nucleus. Predicted to be active in cytoplasm. Orthologous to human CMAHP (cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene); PARTICIPATES IN amino sugar metabolic pathway; nucleotide sugar metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Cmahp; CMP-N-acetylneuraminate monooxygenase; cytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase); cytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase) ; cytidine monophospho-N-acetylneuraminic acid hydroxylase,; cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene; LOC361245
RGD Orthologs
Human
Mouse
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81740,985,129 - 41,070,317 (-)NCBIGRCr8
mRatBN7.21740,557,161 - 40,642,350 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1740,583,667 - 40,642,275 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1740,651,566 - 40,713,392 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01742,255,609 - 42,317,444 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01740,538,784 - 40,596,352 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01742,567,472 - 42,640,221 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1742,583,945 - 42,640,221 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01744,449,934 - 44,506,535 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41747,672,292 - 47,715,697 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11747,675,138 - 47,718,538 (-)NCBI
Celera1740,219,952 - 40,277,207 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-(hydroxymethyl)cytosine  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
amphetamine  (EXP)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
carbon nanotube  (ISO)
cyclosporin A  (ISO)
cyproconazole  (ISO)
decabromodiphenyl ether  (EXP)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
fipronil  (ISO)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
GW 4064  (ISO)
inulin  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
N,N-diethyl-m-toluamide  (ISO)
nitrates  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
protein kinase inhibitor  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA,ISO)
cytoskeleton  (ISO)
membrane  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7608218   PMID:12477932   PMID:19890979   PMID:21987817   PMID:22692205  


Genomics

Comparative Map Data
Cmah
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81740,985,129 - 41,070,317 (-)NCBIGRCr8
mRatBN7.21740,557,161 - 40,642,350 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1740,583,667 - 40,642,275 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1740,651,566 - 40,713,392 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01742,255,609 - 42,317,444 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01740,538,784 - 40,596,352 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01742,567,472 - 42,640,221 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1742,583,945 - 42,640,221 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01744,449,934 - 44,506,535 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41747,672,292 - 47,715,697 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11747,675,138 - 47,718,538 (-)NCBI
Celera1740,219,952 - 40,277,207 (-)NCBICelera
Cytogenetic Map17p11NCBI
CMAHP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38625,081,067 - 25,138,392 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl625,081,862 - 25,138,081 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl625,061,611 - 25,452,263 (-)EnsemblGRCh38hg38GRCh38
GRCh37625,081,295 - 25,138,620 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36625,189,274 - 25,246,030 (-)NCBINCBI36Build 36hg18NCBI36
Build 34625,189,521 - 25,246,011NCBI
Celera626,308,566 - 26,365,922 (-)NCBICelera
Cytogenetic Map6p22.3NCBI
HuRef625,024,347 - 25,081,700 (-)NCBIHuRef
CHM1_1625,083,540 - 25,140,873 (-)NCBICHM1_1
T2T-CHM13v2.0624,946,777 - 25,004,128 (-)NCBIT2T-CHM13v2.0
Cmah
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391324,511,387 - 24,661,272 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1324,511,387 - 24,661,360 (+)EnsemblGRCm39 Ensembl
GRCm381324,327,404 - 24,477,289 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1324,327,404 - 24,477,377 (+)EnsemblGRCm38mm10GRCm38
MGSCv371324,419,289 - 24,569,154 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361324,422,587 - 24,478,476 (+)NCBIMGSCv36mm8
Celera1324,557,924 - 24,708,037 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map1310.34NCBI
CMAH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl719,870,966 - 19,955,759 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1719,879,367 - 19,917,761 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2721,032,289 - 21,070,741 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Cmah
776 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:191
Count of miRNA genes:138
Interacting mature miRNAs:151
Transcripts:ENSRNOT00000018699
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172393042179524188Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2393042179524188Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172393042179524188Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat

Markers in Region
RH128868  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21740,583,793 - 40,583,950 (+)MAPPERmRatBN7.2
Rnor_6.01742,584,072 - 42,584,228NCBIRnor6.0
Rnor_5.01744,450,067 - 44,450,223UniSTSRnor5.0
RGSC_v3.41747,672,425 - 47,672,581UniSTSRGSC3.4
Celera1740,220,085 - 40,220,241UniSTS
Cytogenetic Map17p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 77 91 90 59 25 59 6 218 97 57 45 59 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005495302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC095843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000018699   ⟹   ENSRNOP00000018699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,583,667 - 40,642,275 (-)Ensembl
Rnor_6.0 Ensembl1742,583,945 - 42,640,221 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081105   ⟹   ENSRNOP00000070006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,583,667 - 40,639,454 (-)Ensembl
Rnor_6.0 Ensembl1742,586,480 - 42,639,922 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106094   ⟹   ENSRNOP00000083998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,583,667 - 40,640,463 (-)Ensembl
RefSeq Acc Id: NM_001024273   ⟹   NP_001019444
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,011,635 - 41,067,930 (-)NCBI
mRatBN7.21740,583,661 - 40,639,958 (-)NCBI
Rnor_6.01742,583,939 - 42,640,221 (-)NCBI
Rnor_5.01744,449,934 - 44,506,535 (-)NCBI
RGSC_v3.41747,672,292 - 47,715,697 (-)RGD
Celera1740,219,952 - 40,277,207 (-)RGD
Sequence:
RefSeq Acc Id: XM_039095887   ⟹   XP_038951815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,011,635 - 41,070,314 (-)NCBI
mRatBN7.21740,583,661 - 40,642,346 (-)NCBI
RefSeq Acc Id: XM_039095888   ⟹   XP_038951816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,011,635 - 41,068,455 (-)NCBI
mRatBN7.21740,583,661 - 40,640,216 (-)NCBI
RefSeq Acc Id: XM_039095889   ⟹   XP_038951817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,011,635 - 41,070,315 (-)NCBI
mRatBN7.21740,583,658 - 40,642,346 (-)NCBI
RefSeq Acc Id: XM_039095890   ⟹   XP_038951818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81740,988,952 - 41,070,314 (-)NCBI
mRatBN7.21740,562,626 - 40,642,347 (-)NCBI
RefSeq Acc Id: XM_039095891   ⟹   XP_038951819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,017,927 - 41,070,317 (-)NCBI
mRatBN7.21740,589,950 - 40,642,350 (-)NCBI
RefSeq Acc Id: XM_063276607   ⟹   XP_063132677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,011,635 - 41,068,455 (-)NCBI
RefSeq Acc Id: XM_063276608   ⟹   XP_063132678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81740,988,952 - 41,068,456 (-)NCBI
RefSeq Acc Id: XR_005495302
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81740,988,956 - 41,070,314 (-)NCBI
mRatBN7.21740,562,626 - 40,642,347 (-)NCBI
RefSeq Acc Id: XR_010058898
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81740,985,129 - 41,070,314 (-)NCBI
RefSeq Acc Id: XR_010058899
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81740,985,129 - 41,068,456 (-)NCBI
RefSeq Acc Id: NP_001019444   ⟸   NM_001024273
- UniProtKB: F1LNX8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018699   ⟸   ENSRNOT00000018699
Ensembl Acc Id: ENSRNOP00000070006   ⟸   ENSRNOT00000081105
RefSeq Acc Id: XP_038951818   ⟸   XM_039095890
- Peptide Label: isoform X1
- UniProtKB: F1LNX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951817   ⟸   XM_039095889
- Peptide Label: isoform X1
- UniProtKB: F1LNX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951815   ⟸   XM_039095887
- Peptide Label: isoform X1
- UniProtKB: F1LNX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951816   ⟸   XM_039095888
- Peptide Label: isoform X1
- UniProtKB: F1LNX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951819   ⟸   XM_039095891
- Peptide Label: isoform X2
- UniProtKB: F1LNX8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083998   ⟸   ENSRNOT00000106094
RefSeq Acc Id: XP_063132678   ⟸   XM_063276608
- Peptide Label: isoform X1
- UniProtKB: F1LNX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132677   ⟸   XM_063276607
- Peptide Label: isoform X1
- UniProtKB: F1LNX8 (UniProtKB/TrEMBL)
Protein Domains
Rieske

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JWT4-F1-model_v2 AlphaFold A0A0G2JWT4 1-578 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700446
Promoter ID:EPDNEW_R10970
Type:initiation region
Name:Cmahp_1
Description:cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01742,640,169 - 42,640,229EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311930 AgrOrtholog
BioCyc Gene G2FUF-9415 BioCyc
Ensembl Genes ENSRNOG00000003094 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018699 ENTREZGENE
  ENSRNOT00000018699.8 UniProtKB/TrEMBL
  ENSRNOT00000081105.2 UniProtKB/TrEMBL
  ENSRNOT00000106094 ENTREZGENE
  ENSRNOT00000106094.1 UniProtKB/TrEMBL
Gene3D-CATH 2.102.10.10 UniProtKB/TrEMBL
  3.60.15.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7389569 IMAGE-MGC_LOAD
InterPro CMP-Neu5Ac_hydroxylase_Rieske UniProtKB/TrEMBL
  Cnh UniProtKB/TrEMBL
  Metallo-hydrolase/OxRdtase UniProtKB/TrEMBL
  Rieske_2Fe-2S UniProtKB/TrEMBL
  Rieske_2Fe-2S_sf UniProtKB/TrEMBL
MGC_CLONE MGC:112687 IMAGE-MGC_LOAD
NCBI Gene 361245 ENTREZGENE
PANTHER CYTIDINE MONOPHOSPHATE-N-ACETYLNEURAMINIC ACID HYDROXYLASE UniProtKB/TrEMBL
  PTHR46522 UniProtKB/TrEMBL
Pfam Lactamase_B_3 UniProtKB/TrEMBL
  Rieske UniProtKB/TrEMBL
PhenoGen Cmah PhenoGen
PROSITE RIESKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003094 RatGTEx
Superfamily-SCOP Rieske_dom UniProtKB/TrEMBL
  SSF56281 UniProtKB/TrEMBL
UniProt A0A0G2JWT4_RAT UniProtKB/TrEMBL
  A0A8I5ZY63_RAT UniProtKB/TrEMBL
  A6KLH3_RAT UniProtKB/TrEMBL
  A6KLH6_RAT UniProtKB/TrEMBL
  A6KLH9_RAT UniProtKB/TrEMBL
  F1LNX8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-29 Cmah  cytidine monophospho-N-acetylneuraminic acid hydroxylase  Cmahp  cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene  Name and Symbol changed 629549 APPROVED
2017-08-18 Cmahp  cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene  Cmah  cytidine monophospho-N-acetylneuraminic acid hydroxylase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-06 Cmah  cytidine monophospho-N-acetylneuraminic acid hydroxylase  Cmahp  cytidine monophospho-N-acetylneuraminic acid hydroxylase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-03 Cmahp  cytidine monophospho-N-acetylneuraminic acid hydroxylase  Cmah  cytidine monophosphate-N-acetylneuraminic acid hydroxylase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-22 Cmah  cytidine monophosphate-N-acetylneuraminic acid hydroxylase  Cmah  cytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase) pseudogene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Cmah  cytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase) pseudogene  Cmah  cytidine monophospho-N-acetylneuraminic acid hydroxylase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cmah  cytidine monophospho-N-acetylneuraminic acid hydroxylase  Cmah_predicted  cytidine monophospho-N-acetylneuraminic acid hydroxylase (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cmah_predicted  cytidine monophospho-N-acetylneuraminic acid hydroxylase (predicted)      Symbol and Name status set to approved 70820 APPROVED