Slc17a2 (solute carrier family 17, member 2) - Rat Genome Database

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Gene: Slc17a2 (solute carrier family 17, member 2) Rattus norvegicus
Analyze
Symbol: Slc17a2
Name: solute carrier family 17, member 2
RGD ID: 1308821
Description: Predicted to enable urate transmembrane transporter activity. Predicted to be involved in monoatomic anion transport. Predicted to be active in apical plasma membrane. Orthologous to human SLC17A2 (solute carrier family 17 member 2); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306950; sodium-dependent phosphate transport protein 3; solute carrier family 17 (sodium phosphate), member 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,748,195 - 41,767,601 (-)NCBIGRCr8
mRatBN7.21741,318,312 - 41,339,012 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,319,701 - 41,336,325 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,394,439 - 41,410,347 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01742,998,484 - 43,014,397 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,277,169 - 41,293,061 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,567,528 - 43,584,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,567,528 - 43,584,152 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01745,421,914 - 45,438,592 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,557,119 - 48,573,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11748,536,430 - 48,575,608 (+)NCBI
Celera1740,951,177 - 40,967,800 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Slc17a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,748,195 - 41,767,601 (-)NCBIGRCr8
mRatBN7.21741,318,312 - 41,339,012 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,319,701 - 41,336,325 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,394,439 - 41,410,347 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01742,998,484 - 43,014,397 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,277,169 - 41,293,061 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,567,528 - 43,584,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,567,528 - 43,584,152 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01745,421,914 - 45,438,592 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,557,119 - 48,573,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11748,536,430 - 48,575,608 (+)NCBI
Celera1740,951,177 - 40,967,800 (-)NCBICelera
Cytogenetic Map17p11NCBI
SLC17A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38625,912,754 - 25,930,691 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl625,912,754 - 25,930,691 (-)EnsemblGRCh38hg38GRCh38
GRCh37625,912,982 - 25,930,919 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,020,961 - 26,038,818 (-)NCBINCBI36Build 36hg18NCBI36
Build 34626,020,964 - 26,038,818NCBI
Celera627,140,178 - 27,158,141 (-)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef625,856,022 - 25,873,987 (-)NCBIHuRef
CHM1_1625,915,216 - 25,933,185 (-)NCBICHM1_1
T2T-CHM13v2.0625,778,573 - 25,796,593 (-)NCBIT2T-CHM13v2.0
Slc17a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391323,990,924 - 24,009,174 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1323,990,976 - 24,009,163 (+)EnsemblGRCm39 Ensembl
GRCm381323,806,941 - 23,825,191 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,806,993 - 23,825,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371323,898,896 - 23,915,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361323,814,492 - 23,830,990 (+)NCBIMGSCv36mm8
Celera1324,038,724 - 24,055,222 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map139.94NCBI
Slc17a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554831,185,757 - 1,201,851 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554831,185,775 - 1,201,851 (+)NCBIChiLan1.0ChiLan1.0
SLC17A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,558,561 - 40,576,490 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,560,004 - 36,577,945 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0625,746,100 - 25,764,029 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,404,154 - 26,421,989 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl626,404,163 - 26,421,879 (-)Ensemblpanpan1.1panPan2
SLC17A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13523,839,113 - 23,919,789 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3523,840,934 - 23,853,385 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3523,742,823 - 23,774,994 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03523,956,046 - 24,034,967 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3523,907,888 - 23,972,065 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13523,772,195 - 23,851,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03523,823,047 - 23,902,139 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,256,073 - 25,334,970 (-)NCBIUU_Cfam_GSD_1.0
Slc17a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,788,222 - 1,803,764 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366711,818,052 - 1,829,059 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366711,818,052 - 1,828,993 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC17A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,644,244 - 20,663,423 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,596,547 - 20,663,498 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC17A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,329,330 - 46,342,234 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1746,329,529 - 46,342,657 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604425,844,734 - 25,865,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc17a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247561,088,943 - 1,106,509 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247561,088,919 - 1,119,361 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc17a2
68 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:317
Count of miRNA genes:209
Interacting mature miRNAs:242
Transcripts:ENSRNOT00000023241
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172393042179524188Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2393042179524188Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172393042179524188Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 9 13 58 90 88 59 19 59 6 167 53 38 41 50 29

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000023241   ⟹   ENSRNOP00000023241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,319,701 - 41,336,325 (-)Ensembl
Rnor_6.0 Ensembl1743,567,528 - 43,584,152 (-)Ensembl
RefSeq Acc Id: NM_001107353   ⟹   NP_001100823
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,764,180 (-)NCBI
mRatBN7.21741,320,339 - 41,336,325 (-)NCBI
Rnor_6.01743,567,528 - 43,584,152 (-)NCBI
Rnor_5.01745,421,914 - 45,438,592 (-)NCBI
RGSC_v3.41748,557,119 - 48,573,741 (+)RGD
Celera1740,951,177 - 40,967,800 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253966   ⟹   XP_006254028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,764,018 (-)NCBI
mRatBN7.21741,318,312 - 41,339,000 (-)NCBI
Rnor_6.01743,567,959 - 43,584,226 (-)NCBI
Rnor_5.01745,421,914 - 45,438,592 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253967   ⟹   XP_006254029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,767,586 (-)NCBI
mRatBN7.21741,318,312 - 41,339,000 (-)NCBI
Rnor_6.01743,567,959 - 43,584,226 (-)NCBI
Rnor_5.01745,421,914 - 45,438,592 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095702   ⟹   XP_038951630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,762,135 (-)NCBI
mRatBN7.21741,318,312 - 41,339,002 (-)NCBI
RefSeq Acc Id: XM_039095703   ⟹   XP_038951631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,759,949 (-)NCBI
mRatBN7.21741,318,312 - 41,332,089 (-)NCBI
RefSeq Acc Id: XM_039095704   ⟹   XP_038951632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,762,135 (-)NCBI
mRatBN7.21741,318,312 - 41,339,000 (-)NCBI
RefSeq Acc Id: XM_039095705   ⟹   XP_038951633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,762,135 (-)NCBI
mRatBN7.21741,320,667 - 41,338,995 (-)NCBI
RefSeq Acc Id: XM_039095706   ⟹   XP_038951634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,762,135 (-)NCBI
mRatBN7.21741,318,312 - 41,339,002 (-)NCBI
RefSeq Acc Id: XM_039095707   ⟹   XP_038951635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,764,018 (-)NCBI
mRatBN7.21741,318,312 - 41,339,006 (-)NCBI
RefSeq Acc Id: XM_039095709   ⟹   XP_038951637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,748,195 - 41,767,601 (-)NCBI
mRatBN7.21741,318,312 - 41,339,007 (-)NCBI
RefSeq Acc Id: XM_039095710   ⟹   XP_038951638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,750,915 - 41,762,135 (-)NCBI
mRatBN7.21741,323,059 - 41,339,009 (-)NCBI
RefSeq Acc Id: XM_039095711   ⟹   XP_038951639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,750,916 - 41,762,135 (-)NCBI
mRatBN7.21741,323,060 - 41,339,010 (-)NCBI
RefSeq Acc Id: XM_039095712   ⟹   XP_038951640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,750,696 - 41,762,135 (-)NCBI
mRatBN7.21741,322,840 - 41,339,012 (-)NCBI
RefSeq Acc Id: XR_010058868
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,749,852 - 41,762,135 (-)NCBI
RefSeq Acc Id: NP_001100823   ⟸   NM_001107353
- UniProtKB: D4A3I8 (UniProtKB/TrEMBL),   A6KLL5 (UniProtKB/TrEMBL),   A6KLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254029   ⟸   XM_006253967
- Peptide Label: isoform X2
- UniProtKB: A6KLL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254028   ⟸   XM_006253966
- Peptide Label: isoform X2
- UniProtKB: A6KLL4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023241   ⟸   ENSRNOT00000023241
RefSeq Acc Id: XP_038951637   ⟸   XM_039095709
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038951635   ⟸   XM_039095707
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038951634   ⟸   XM_039095706
- Peptide Label: isoform X4
- UniProtKB: A6KLL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951630   ⟸   XM_039095702
- Peptide Label: isoform X1
- UniProtKB: A6KLL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951632   ⟸   XM_039095704
- Peptide Label: isoform X2
- UniProtKB: A6KLL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951631   ⟸   XM_039095703
- Peptide Label: isoform X1
- UniProtKB: A6KLL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951633   ⟸   XM_039095705
- Peptide Label: isoform X3
- UniProtKB: A6KLL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951640   ⟸   XM_039095712
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038951638   ⟸   XM_039095710
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038951639   ⟸   XM_039095711
- Peptide Label: isoform X7
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3I8-F1-model_v2 AlphaFold D4A3I8 1-447 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700451
Promoter ID:EPDNEW_R10975
Type:initiation region
Name:Slc17a2_1
Description:solute carrier family 17, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01743,584,164 - 43,584,224EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308821 AgrOrtholog
BioCyc Gene G2FUF-9389 BioCyc
Ensembl Genes ENSRNOG00000017180 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023241.7 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro Major_facilitator_SF UniProtKB/TrEMBL
  MFS_1 UniProtKB/TrEMBL
  MFS_Na/Anion_cotransporter UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report rno:306950 UniProtKB/TrEMBL
NCBI Gene 306950 ENTREZGENE
PANTHER SODIUM-DEPENDENT PHOSPHATE TRANSPORT PROTEIN 3 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 17 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PhenoGen Slc17a2 PhenoGen
PROSITE MFS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017180 RatGTEx
Superfamily-SCOP MFS_gen_substrate_transporter UniProtKB/TrEMBL
UniProt A6KLL4 ENTREZGENE, UniProtKB/TrEMBL
  A6KLL5 ENTREZGENE, UniProtKB/TrEMBL
  D4A3I8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-02 Slc17a2  solute carrier family 17, member 2  Slc17a2  solute carrier family 17 (sodium phosphate), member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Slc17a2  solute carrier family 17 (sodium phosphate), member 2   Slc17a2_predicted  solute carrier family 17 (sodium phosphate), member 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Slc17a2_predicted  solute carrier family 17 (sodium phosphate), member 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED