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Gene: Zkscan3 (zinc finger with KRAB and SCAN domains 3) Rattus norvegicus

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Symbol:

Zkscan3

Name:

zinc finger with KRAB and SCAN domains 3

RGD ID:

1305753

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in several processes, including negative regulation of autophagy; negative regulation of cellular senescence; and regulation of DNA-templated transcription. Predicted to be located in cytoplasm and nucleoplasm. Orthologous to several human genes including ZKSCAN3 (zinc finger with KRAB and SCAN domains 3); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC306977; MGC108865; Zfp307; zinc finger protein 307; zinc finger protein with KRAB and SCAN domains 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	47,912,816 - 47,928,553 (+)	NCBI		GRCr8
mRatBN7.2	17	43,217,168 - 43,232,828 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	43,217,222 - 43,232,827 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	45,274,623 - 45,290,236 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	50,033,731 - 50,049,344 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	44,524,146 - 44,539,759 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	45,247,724 - 45,263,422 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	45,247,776 - 45,263,418 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	58,204,677 - 58,220,555 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	50,862,534 - 50,901,252 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	50,865,374 - 50,880,759 (+)	NCBI
Celera	17	53,235,157 - 53,250,769 (-)	NCBI		Celera
Cytogenetic Map	17	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zkscan3	Rat	megacolon		ISO	ZKSCAN3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Megacolon	ClinVar	PMID:21681106

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zkscan3	Rat	Colorectal Neoplasms		ISO	ZKSCAN3 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:18519692

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zkscan3	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Zkscan3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ZKSCAN3 mRNA	CTD	PMID:21570461 and PMID:24058054
Zkscan3	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2 and 4-dinitrotoluene affects the expression of ZKSCAN3 mRNA	CTD	PMID:21346803
Zkscan3	Rat	2,6-dinitrotoluene	affects expression	EXP		6480464	2 and 6-dinitrotoluene affects the expression of ZKSCAN3 mRNA	CTD	PMID:21346803
Zkscan3	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Zkscan3 (Mus musculus)	6480464	Fenretinide results in increased expression of ZKSCAN3 mRNA	CTD	PMID:28973697
Zkscan3	Rat	5-fluorouracil	decreases response to substance	ISO	ZKSCAN3 (Homo sapiens)	6480464	ZKSCAN3 protein results in decreased susceptibility to Fluorouracil	CTD	PMID:18519692
Zkscan3	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:30047161
Zkscan3	Rat	acrylamide	increases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Acrylamide results in increased expression of ZKSCAN3 mRNA	CTD	PMID:32763439
Zkscan3	Rat	aflatoxin B1	decreases methylation	ISO	ZKSCAN3 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of ZKSCAN3 gene	CTD	PMID:27153756
Zkscan3	Rat	alpha,alpha-trehalose	increases expression	ISO	Zkscan3 (Mus musculus)	6480464	Trehalose results in increased expression of ZKSCAN3 mRNA	CTD	PMID:30335591
Zkscan3	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:30047161
Zkscan3	Rat	benzo[a]pyrene	increases expression	ISO	Zkscan3 (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of ZKSCAN3 mRNA	CTD	PMID:22228805
Zkscan3	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ZKSCAN3 mRNA	CTD	PMID:25181051 more ...
Zkscan3	Rat	bisphenol A	decreases expression	ISO	Zkscan3 (Mus musculus)	6480464	bisphenol A results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:32156529
Zkscan3	Rat	bisphenol A	decreases methylation	ISO	ZKSCAN3 (Homo sapiens)	6480464	bisphenol A results in decreased methylation of ZKSCAN3 gene	CTD	PMID:31601247
Zkscan3	Rat	bisphenol A	multiple interactions	ISO	ZKSCAN3 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] affects the methylation of ZKSCAN3 gene	CTD	PMID:31601247
Zkscan3	Rat	bisphenol A	increases expression	ISO	Zkscan3 (Mus musculus)	6480464	bisphenol A results in increased expression of ZKSCAN3 mRNA	CTD	PMID:33221593 and PMID:38074096
Zkscan3	Rat	bisphenol F	decreases expression	ISO	Zkscan3 (Mus musculus)	6480464	bisphenol F results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:38685157
Zkscan3	Rat	cadmium atom	multiple interactions	ISO	Zkscan3 (Mus musculus)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:37325564
Zkscan3	Rat	cadmium dichloride	decreases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:38568856
Zkscan3	Rat	cadmium dichloride	multiple interactions	ISO	Zkscan3 (Mus musculus)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:37325564
Zkscan3	Rat	carbon nanotube	decreases expression	ISO	Zkscan3 (Mus musculus)	6480464	Nanotubes and Carbon results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:25554681
Zkscan3	Rat	carbon nanotube	increases expression	ISO	Zkscan3 (Mus musculus)	6480464	Nanotubes and Carbon results in increased expression of ZKSCAN3 mRNA	CTD	PMID:25620056
Zkscan3	Rat	clobetasol	decreases expression	ISO	Zkscan3 (Mus musculus)	6480464	Clobetasol results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:27462272
Zkscan3	Rat	copper(II) sulfate	decreases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:19549813
Zkscan3	Rat	crocidolite asbestos	decreases expression	ISO	Zkscan3 (Mus musculus)	6480464	Asbestos and Crocidolite results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:29279043
Zkscan3	Rat	cyclosporin A	decreases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:25562108
Zkscan3	Rat	Dibutyl phosphate	affects expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of ZKSCAN3 mRNA	CTD	PMID:37042841
Zkscan3	Rat	dorsomorphin	multiple interactions	ISO	ZKSCAN3 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:27188386
Zkscan3	Rat	epoxiconazole	decreases expression	ISO	Zkscan3 (Mus musculus)	6480464	epoxiconazole results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:35436446
Zkscan3	Rat	fulvestrant	multiple interactions	ISO	ZKSCAN3 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] affects the methylation of ZKSCAN3 gene	CTD	PMID:31601247
Zkscan3	Rat	lactulose	increases expression	ISO	Zkscan3 (Mus musculus)	6480464	Lactulose results in increased expression of ZKSCAN3 mRNA	CTD	PMID:30335591
Zkscan3	Rat	lipopolysaccharide	multiple interactions	ISO	ZKSCAN3 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of ZKSCAN3 mRNA	CTD	PMID:35811015
Zkscan3	Rat	lipopolysaccharide	decreases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Lipopolysaccharides results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:35811015
Zkscan3	Rat	melibiose	increases expression	ISO	Zkscan3 (Mus musculus)	6480464	Melibiose results in increased expression of ZKSCAN3 mRNA	CTD	PMID:30335591
Zkscan3	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:30047161
Zkscan3	Rat	methotrexate	increases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Methotrexate results in increased expression of ZKSCAN3 mRNA	CTD	PMID:24449571
Zkscan3	Rat	nefazodone	decreases expression	EXP		6480464	nefazodone results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:24136188
Zkscan3	Rat	nickel atom	decreases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Nickel results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:24768652
Zkscan3	Rat	nimesulide	decreases expression	EXP		6480464	nimesulide results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:24136188
Zkscan3	Rat	paracetamol	affects expression	ISO	Zkscan3 (Mus musculus)	6480464	Acetaminophen affects the expression of ZKSCAN3 mRNA	CTD	PMID:17562736
Zkscan3	Rat	phenobarbital	affects expression	ISO	Zkscan3 (Mus musculus)	6480464	Phenobarbital affects the expression of ZKSCAN3 mRNA	CTD	PMID:23091169
Zkscan3	Rat	propiconazole	decreases expression	EXP		6480464	propiconazole results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:30047161
Zkscan3	Rat	resveratrol	decreases expression	EXP		6480464	resveratrol results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:25905778
Zkscan3	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	ZKSCAN3 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of ZKSCAN3 mRNA	CTD	PMID:35811015
Zkscan3	Rat	SB 431542	multiple interactions	ISO	ZKSCAN3 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:27188386
Zkscan3	Rat	sodium arsenate	increases expression	ISO	Zkscan3 (Mus musculus)	6480464	sodium arsenate results in increased expression of ZKSCAN3 mRNA	CTD	PMID:21795629
Zkscan3	Rat	styrene	decreases expression	ISO	Zkscan3 (Mus musculus)	6480464	Styrene results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:28951217
Zkscan3	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:30047161
Zkscan3	Rat	temozolomide	increases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Temozolomide results in increased expression of ZKSCAN3 mRNA	CTD	PMID:31758290
Zkscan3	Rat	tetraphene	decreases expression	ISO	Zkscan3 (Mus musculus)	6480464	benz(a)anthracene results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:26377693
Zkscan3	Rat	titanium dioxide	increases expression	ISO	Zkscan3 (Mus musculus)	6480464	titanium dioxide results in increased expression of ZKSCAN3 mRNA	CTD	PMID:29264374
Zkscan3	Rat	titanium dioxide	decreases methylation	ISO	Zkscan3 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of ZKSCAN3 gene and titanium dioxide results in decreased methylation of ZKSCAN3 promoter	CTD	PMID:35295148
Zkscan3	Rat	trichostatin A	decreases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	trichostatin A results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:24935251
Zkscan3	Rat	triphenyl phosphate	affects expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of ZKSCAN3 mRNA	CTD	PMID:37042841
Zkscan3	Rat	valproic acid	affects expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Valproic Acid affects the expression of ZKSCAN3 mRNA	CTD	PMID:25979313
Zkscan3	Rat	valproic acid	multiple interactions	ISO	ZKSCAN3 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:27188386
Zkscan3	Rat	valproic acid	decreases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:23179753 more ...
Zkscan3	Rat	vanadyl sulfate	increases expression	ISO	ZKSCAN3 (Homo sapiens)	6480464	vanadyl sulfate results in increased expression of ZKSCAN3 mRNA	CTD	PMID:16330358
Zkscan3	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of ZKSCAN3 mRNA	CTD	PMID:18042343

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zkscan3	Rat	lysosome organization	involved_in	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:23434374	RGD	PMID:23434374
Zkscan3	Rat	negative regulation of autophagy	involved_in	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:23434374	RGD	PMID:23434374
Zkscan3	Rat	negative regulation of cellular senescence	involved_in	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:23434374	RGD	PMID:23434374
Zkscan3	Rat	negative regulation of DNA-templated transcription	involved_in	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:23434374	RGD	PMID:23434374
Zkscan3	Rat	negative regulation of transcription by RNA polymerase II	involved_in	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:18940803	RGD	PMID:18940803
Zkscan3	Rat	positive regulation of DNA-templated transcription	involved_in	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:18940803	RGD	PMID:18940803
Zkscan3	Rat	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR001909 and InterPro:IPR036051	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Zkscan3	Rat	regulation of transcription by RNA polymerase II	involved_in	IBA	FB:FBgn0004618 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zkscan3	Rat	cytoplasm	located_in	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:23434374	RGD	PMID:23434374
Zkscan3	Rat	nucleoplasm	located_in	ISO	ZKSCAN3 (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Zkscan3	Rat	nucleus	located_in	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:18940803 and PMID:23434374	RGD	PMID:18940803 and PMID:23434374
Zkscan3	Rat	nucleus	located_in	IEA	UniRule:UR000415288	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Zkscan3	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zkscan3	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zkscan3	Rat	chromatin binding	enables	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:18940803	RGD	PMID:18940803
Zkscan3	Rat	DNA binding	enables	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:18940803	RGD	PMID:18940803
Zkscan3	Rat	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zkscan3	Rat	DNA-binding transcription factor activity	enables	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:23434374	RGD	PMID:23434374
Zkscan3	Rat	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IBA	FB:FBgn0004618 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zkscan3	Rat	DNA-binding transcription repressor activity, RNA polymerase II-specific	enables	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:18940803	RGD	PMID:18940803
Zkscan3	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zkscan3	Rat	protein binding	enables	ISO	ZKSCAN3 (Homo sapiens)	1624291	UniProtKB:A0A6Q8PF08 more ...	RGD	PMID:25416956 more ...
Zkscan3	Rat	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:18940803	RGD	PMID:18940803
Zkscan3	Rat	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IBA	MGI:1338823 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zkscan3	Rat	sequence-specific DNA binding	enables	ISO	ZKSCAN3 (Homo sapiens)	1624291	PMID:23434374	RGD	PMID:23434374
Zkscan3	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:18940803	PMID:23434374

Zkscan3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	47,912,816 - 47,928,553 (+)	NCBI		GRCr8
mRatBN7.2	17	43,217,168 - 43,232,828 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	43,217,222 - 43,232,827 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	45,274,623 - 45,290,236 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	50,033,731 - 50,049,344 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	44,524,146 - 44,539,759 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	45,247,724 - 45,263,422 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	45,247,776 - 45,263,418 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	58,204,677 - 58,220,555 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	50,862,534 - 50,901,252 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	50,865,374 - 50,880,759 (+)	NCBI
Celera	17	53,235,157 - 53,250,769 (-)	NCBI		Celera
Cytogenetic Map	17	p11	NCBI

ZKSCAN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	28,349,878 - 28,369,172 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	28,349,947 - 28,369,172 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	28,317,724 - 28,336,949 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	28,425,738 - 28,442,503 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	28,425,737 - 28,442,502	NCBI
Celera	6	29,924,132 - 29,940,962 (+)	NCBI		Celera
Cytogenetic Map	6	p22.1	NCBI
HuRef	6	28,124,766 - 28,144,005 (+)	NCBI		HuRef
CHM1_1	6	28,320,076 - 28,339,339 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	28,221,444 - 28,240,735 (+)	NCBI		T2T-CHM13v2.0

Zkscan3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	21,571,174 - 21,586,942 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	21,571,173 - 21,586,925 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	21,387,004 - 21,402,755 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	21,387,003 - 21,402,755 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	21,478,873 - 21,494,624 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	21,394,546 - 21,412,211 (-)	NCBI		MGSCv36	mm8
Celera	13	21,652,946 - 21,668,698 (-)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI
cM Map	13	7.78	NCBI

ZKSCAN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	42,971,264 - 42,990,882 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	38,972,274 - 38,995,206 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	28,157,736 - 28,174,906 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	28,828,297 - 28,847,596 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	28,828,298 - 28,847,596 (+)	Ensembl	panpan1.1		panPan2

Zkscan3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	28,778,053 - 28,795,403 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936772	43 - 7,099 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZKSCAN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	44,199,513 - 44,216,456 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	44,200,164 - 44,216,706 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	28,042,781 - 28,062,276 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants in Zkscan3
25 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	647
Count of miRNA genes:	270
Interacting mature miRNAs:	347
Transcripts:	ENSRNOT00000024783, ENSRNOT00000066981
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631497	Bp98	Blood pressure QTL 98	3.66		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	41354651	60463643	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	7e-07	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	27389946	53481766	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22454924	50909196	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27027949	56836890	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	31368391	62109574	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24184890	79524188	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
2313854	Bp343	Blood pressure QTL 343	3.9		life span trait (VT:0005372)	age at time of death (CMO:0001193)	17	31990784	50909196	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	42073160	69599340	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27027949	60463643	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	57246843	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			23930421	79524188	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	35837085	69599340	Rat

AI132359

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	43,232,360 - 43,232,587 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	45,262,950 - 45,263,180	NCBI	Rnor6.0
Rnor_5.0	17	58,204,917 - 58,205,147	UniSTS	Rnor5.0
Celera	17	53,235,397 - 53,235,623	UniSTS
Cytogenetic Map	17	q11	UniSTS

RH143072

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	43,226,055 - 43,226,156 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	45,256,635 - 45,256,735	NCBI	Rnor6.0
Rnor_5.0	17	58,211,556 - 58,211,656	UniSTS	Rnor5.0
RGSC_v3.4	17	50,871,374 - 50,871,474	UniSTS	RGSC3.4
Celera	17	53,241,828 - 53,241,928	UniSTS
Cytogenetic Map	17	q11	UniSTS

RH124729

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	43,232,557 - 43,232,654 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	45,263,151 - 45,263,247	NCBI	Rnor6.0
Rnor_5.0	17	58,204,850 - 58,204,946	UniSTS	Rnor5.0
Celera	17	53,235,330 - 53,235,426	UniSTS
Cytogenetic Map	17	q11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001012053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK602433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000080655 ⟹ ENSRNOP00000072953

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	43,223,450 - 43,226,630 (+)	Ensembl
Rnor_6.0 Ensembl	17	45,247,794 - 45,263,418 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081063 ⟹ ENSRNOP00000069061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	43,217,222 - 43,232,827 (+)	Ensembl
Rnor_6.0 Ensembl	17	45,247,776 - 45,262,858 (+)	Ensembl

RefSeq Acc Id:

NM_001012053 ⟹ NP_001012053

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,941 - 47,928,553 (+)	NCBI
mRatBN7.2	17	43,217,215 - 43,232,827 (+)	NCBI
Rnor_6.0	17	45,247,794 - 45,263,420 (+)	NCBI
Rnor_5.0	17	58,204,677 - 58,220,555 (-)	NCBI
RGSC_v3.4	17	50,862,534 - 50,901,252 (+)	RGD
Celera	17	53,235,157 - 53,250,769 (-)	RGD

Sequence:

show sequence

GCGGGGTGCTACGAGGTGCTGCGTTCGCGGTATTTTGCAGAAATACAACTCACAACTACATTGAAACAGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCCTGGACTCAC
ACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGTCTCCCCATTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCT
TTCCGCTACCCAGACGCAGCAGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTATGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTT
CCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGAGAGGAGGTGGTGGCACTGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAGGTTCCAG
ATGATGACGATGGGCAGGAACTCCTTTGTTCCAAGGCAGTACTGTTGACATCAGCTCAAGGCTCAGAAAGTAGCCAGATGGAGTCCATGGAGCCTTTGCTTAAACAGGAATCTTTGGGATCCCTGCCC
TCAGAAGTTAGAGTCACCCAGGCAGGGCATTGTGGAGAAGATGGAGTGACAGCTACCAGGCTCACATCAGAGCTGCAGGGGCTGCTGAAAATGGAAGATGTAGCCCCAGGCCTTTCCCCGAGATGGAC
AGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGAAATGCAGGAGAACTCTGGCAGCCTGGTTTCCCTGGATGAGAACATGCAAACTAAGGTTAGGGACTTGCCTCCAGCTGAAGAAAACACAG
AACAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCAGATTCCTACAGGTACAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAACACAGAAGAATGCCACGGGAAACAGGCGG
TTCTACTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGGAGCTCAGC
TCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAGCACCAGAGAACCCACACTGGAGAAAAGCCCTACG
AGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATTCACACTGGGGAGAAGCCATACCAGTGCAACATGTGTCCCAAAGCCTTTAGGCGTAGCTCACATCTC
CTGAGACATCAGAGGACCCACACTGGGGATAAAGATTTTTTTGTTCCAGAACCTTACTGGGAAAGTCAGAGTAGGGTGGAAAGCCATTGGGAAAATATTGAGACTCCTGTGTCTTATCAATGCAATGA
TTGTGAGAGAAGTTTTAGTAGGATTACAAGCCTTATTGAACACCAAAAAGTACACACTGGTGAGAAGCCCTTTGAATGCCAGACCTGTGGAAAAGGCTTTACCCGACCTTCATACCTTATTCAACATC
AGAGAAGACACACGGGGAAGAAAACTTCTGTCACAGTGACCCCTGCTGTACATTCCGAAGTTGGTGTTCAACTGTCATTGAACTGAAGCCGCTCTGGAGCTCTTAATGACTGCAGAAGTCATAGGCTA
GGGCTCTATTTAATAATGTACATCCTCAGATATTAGGAATCTGACTAAGACTTATTATCTTCTACATTCTAGAAGGTGACTATAAAAAAAAACTTATTTCATAGGAGAGTTGTCTGCAAGAGTTCTAA
CCTATTGGAATTAAATGGGCTTCCTGACTGTCAAATTGCCTTCCCTTGGCCTGCACTTCCTGTCTCTTGAGGGAAAGGTTATGCTTTTTTTGGGAGGGGTGGGGGTGGGGGAAGTTACTCTGACCCTT
CTTTAGGCTAATGAGCCCTTCACGTGTGGTCAGACTTGGAACTCTTATGTCCTGCTTTGTGCCTTGTATACAGGTGCTAACAAACATTTATTAAATATACTGGTGAGATTTCCTACATAGCTCTGAAA
ACCCATTATCTGGAAATTCTCACCAAGGCCATTTGTATATCTTTGAAAAAAAAAGATAATGTTTTAGATTGAATCAATGTAGTACTGCTTTGTTTTTGTTTTTTGCCAAGTACCCCAACTTGGCAGGG
AAGAGGTGAAGGTGAGGTTATTGTGCTAGAATTCTTTAACTCTTTACCTAATTTAGGAATTCTGTGAGAGTGCCTTAAATAGCTTTCTTAGCATTAAGTCATTGTGAATGTGCCACCCATGGAATTCC
ACTAATATTTTTTTCCTGTTAATTTTGTTACTCTTGAGAGAACAGAAAAGAAAAGAAAAAGTTAAAAAAAAAAAACTTTCCTACTCATGTAGTGTGAAAATCAGTTTCAGAATAAAGTGATCAATGTC
TAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254099 ⟹ XP_006254161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,904 - 47,928,553 (+)	NCBI
mRatBN7.2	17	43,217,196 - 43,232,828 (+)	NCBI
Rnor_6.0	17	45,247,749 - 45,263,422 (+)	NCBI
Rnor_5.0	17	58,204,677 - 58,220,555 (-)	NCBI

Sequence:

show sequence

CTGTGCCCCGCCCCCCGGGGTCGGACTTTCGACACTTTTGTGACTGCGGGGTGCTACGAGGTGC
TGCGTTCGCGGGTGGGTTCGGGTTCCCTCCTGTTACGGTCCTCCCGCGGGGGCCGGCTGCTTGCGGGTGGTGGGGATGGGACAAAACCTCTTCCTCCGCGGCCTAATGGCTCCGGGAAAATAAAATCG
GTGGCTACTTGGGCCGAGCGCCGGACAGGGCCTCGGGCGCCTCGCCTCAGGCCGGTTCCGGGTGTCTGGTCAGTCTCAGGGCGTTTGGCGATGGGATTCTCGGGTCTTGTACTTAAGCTTTGAAAATG
GGAGACGTCACAGTTTTGCTTTTCCTGGAGACAAGTATTTTGCAGAAATACAACTCACAACTACATTGAAACAGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCCTGGA
CTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGTCTCCCCATTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCC
GTGCTTTCCGCTACCCAGACGCAGCAGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTATGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAG
CAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGAGAGGAGGTGGTGGCACTGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAGGT
TCCAGATGATGACGATGGGCAGGAACTCCTTTGTTCCAAGGCAGTACTGTTGACATCAGCTCAAGGCTCAGAAAGTAGCCAGATGGAGTCCATGGAGCCTTTGCTTAAACAGGAATCTTTGGGATCCC
TGCCCTCAGAAGTTAGAGTCACCCAGGCAGGGCATTGTGGAGAAGATGGAGTGACAGCTACCAGGCTCACATCAGAGCTGCAGGGGCTGCTGAAAATGGAAGATGTAGCCCCAGGCCTTTCCCCGAGA
TGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGAAATGCAGGAGAACTCTGGCAGCCTGGTTTCCCTGGATGAGAACATGCAAACTAAGGTTAGGGACTTGCCTCCAGCTGAAGAAAA
CACAGAACAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCAGATTCCTACAGGTACAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAACACAGAAGAATGCCACGGGAAACA
GGCGGTTCTACTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGGAGC
TCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAGCACCAGAGAACCCACACTGGAGAAAAGCC
CTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATTCACACTGGGGAGAAGCCATACCAGTGCAACATGTGTCCCAAAGCCTTTAGGCGTAGCTCAC
ATCTCCTGAGACATCAGAGGACCCACACTGGGGATAAAGATTTTTTTGTTCCAGAACCTTACTGGGAAAGTCAGAGTAGGGTGGAAAGCCATTGGGAAAATATTGAGACTCCTGTGTCTTATCAATGC
AATGATTGTGAGAGAAGTTTCAGTAGGATTACAAGCCTTATTGAACACCAAAAAGTACACACTGGTGAGAAGCCCTTTGAATGCCAGACCTGTGGAAAAGGCTTCACCCGACCTTCATACCTTATTCA
ACATCAGAGAAGACACACGGGGAAGAAAACTTCTGTCACAGTGACCCCTGCTGTACATTCCGAAGTTGGTGTTCAACTGTCATTGAACTGAAGCCGCTCTGGAGCTCTTAATGACTGCAGAAGTCATA
GGCTAGGGCTCTATTTAATAATGTACATCCTCAGATATTAGGAATCTGACTAAGACTTATTATCTTCTACATTCTAGAAGGTGACTATAAAAAAAAACTTATTTCATAGGAGAGTTGTCTGCAAGAGT
TCTAACCTATTGGAATTAAATGGGCTTCCTGACTGTCAAATTGCCTTCCCTTGGCCTGCACTTCCTGTCTCTTGAGGGAAAGGTTATGCTTTTTTTGGGAGGGGTGGGGGTGGGGGAAGTTACTCTGA
CCCTTCTTTAGGCTAATGAGCCCTTCACGTGTGGTCAGACTTGGAACTCTTATGTCCTGCTTTGTGCCTTGTATACAGGTGCTAANAAACAAACATTTATTAAATATACTGGTGAGATTTCCTACATA
GCTCTGAAAACCCATTATCTGGAAATTCTCACCAAGGCCATTTGTATATCTTTGAAAAAAAAAGATAATGTTTTAGATTGAATCAATGTAGTACTGCTTTGTTTTTGTTTTTTGCCAAGTACCCCAAC
TTGGCAGGGAAGAGGTGAAGGTGAGGTTATTGTGCTAGAATTCTTTAACTCTTTACCTAATTTAGGAATTCTGTGAGAGTGCCTTAAATAGCTTTCTTAGCATTAAGTCATTGTGAATGTGCCACCCA
TGGAATTCCACTAATATTTTTTTCCTGTTAATTTTGTTACTCTTGAGAGAACAGAAAAGAAAAGAAAAAGTTAAAAAAAAAAAACTTTCCTACTCATGTAGTGTGAAAATCAGTTTCAGAATAAAGTG
ATCAATGTCTAAGG

hide sequence

RefSeq Acc Id:

XM_006254101 ⟹ XP_006254163

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,899 - 47,928,553 (+)	NCBI
mRatBN7.2	17	43,217,168 - 43,232,828 (+)	NCBI
Rnor_6.0	17	45,247,724 - 45,263,422 (+)	NCBI
Rnor_5.0	17	58,204,677 - 58,220,555 (-)	NCBI

Sequence:

show sequence

GGTGCCTAGAGAAGCCGGAAGTGCTCTGTGCCCCGCCCCCCGGGGTCGGACTTTCGACACTTTT
GTGACTGCGGGGTGCTACGAGGTGCTGCGTTCGCGGTGGGAGGAAGAGCTTGAGAAACAGGAGGAGCATCTAACAGTGAAGAAGGATAAGGACCCTGGTTATTTTGCAGAAATACAACTCACAACTAC
ATTGAAACAGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCCTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGTCTCC
CCATTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGACGCAGCAGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTATG
CAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCG
GAGAGGAGGTGGTGGCACTGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAGGTTCCAGATGATGACGATGGGCAGGAACTCCTTTGTTCCAAGGCAGTACTGTTGACATCAGCTCAA
GGCTCAGAAAGTAGCCAGATGGAGTCCATGGAGCCTTTGCTTAAACAGGAATCTTTGGGATCCCTGCCCTCAGAAGTTAGAGTCACCCAGGCAGGGCATTGTGGAGAAGATGGAGTGACAGCTACCAG
GCTCACATCAGAGCTGCAGGGGCTGCTGAAAATGGAAGATGTAGCCCCAGGCCTTTCCCCGAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGAAATGCAGGAGAACTCTGGCA
GCCTGGTTTCCCTGGATGAGAACATGCAAACTAAGGTTAGGGACTTGCCTCCAGCTGAAGAAAACACAGAACAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCAGATTCCTACA
GGTACAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAACACAGAAGAATGCCACGGGAAACAGGCGGTTCTACTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAA
AAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGGAGCTCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTG
GTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAGCACCAGAGAACCCACACTGGAGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGA
ATTCACACTGGGGAGAAGCCATACCAGTGCAACATGTGTCCCAAAGCCTTTAGGCGTAGCTCACATCTCCTGAGACATCAGAGGACCCACACTGGGGATAAAGATTTTTTTGTTCCAGAACCTTACTG
GGAAAGTCAGAGTAGGGTGGAAAGCCATTGGGAAAATATTGAGACTCCTGTGTCTTATCAATGCAATGATTGTGAGAGAAGTTTCAGTAGGATTACAAGCCTTATTGAACACCAAAAAGTACACACTG
GTGAGAAGCCCTTTGAATGCCAGACCTGTGGAAAAGGCTTCACCCGACCTTCATACCTTATTCAACATCAGAGAAGACACACGGGGAAGAAAACTTCTGTCACAGTGACCCCTGCTGTACATTCCGAA
GTTGGTGTTCAACTGTCATTGAACTGAAGCCGCTCTGGAGCTCTTAATGACTGCAGAAGTCATAGGCTAGGGCTCTATTTAATAATGTACATCCTCAGATATTAGGAATCTGACTAAGACTTATTATC
TTCTACATTCTAGAAGGTGACTATAAAAAAAAACTTATTTCATAGGAGAGTTGTCTGCAAGAGTTCTAACCTATTGGAATTAAATGGGCTTCCTGACTGTCAAATTGCCTTCCCTTGGCCTGCACTTC
CTGTCTCTTGAGGGAAAGGTTATGCTTTTTTTGGGAGGGGTGGGGGTGGGGGAAGTTACTCTGACCCTTCTTTAGGCTAATGAGCCCTTCACGTGTGGTCAGACTTGGAACTCTTATGTCCTGCTTTG
TGCCTTGTATACAGGTGCTAANAAACAAACATTTATTAAATATACTGGTGAGATTTCCTACATAGCTCTGAAAACCCATTATCTGGAAATTCTCACCAAGGCCATTTGTATATCTTTGAAAAAAAAAG
ATAATGTTTTAGATTGAATCAATGTAGTACTGCTTTGTTTTTGTTTTTTGCCAAGTACCCCAACTTGGCAGGGAAGAGGTGAAGGTGAGGTTATTGTGCTAGAATTCTTTAACTCTTTACCTAATTTA
GGAATTCTGTGAGAGTGCCTTAAATAGCTTTCTTAGCATTAAGTCATTGTGAATGTGCCACCCATGGAATTCCACTAATATTTTTTTCCTGTTAATTTTGTTACTCTTGAGAGAACAGAAAAGAAAAG
AAAAAGTTAAAAAAAAAAAACTTTCCTACTCATGTAGTGTGAAAATCAGTTTCAGAATAAAGTGATCAATGTCTAAGG

hide sequence

RefSeq Acc Id:

XM_008771726 ⟹ XP_008769948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,917 - 47,928,553 (+)	NCBI
mRatBN7.2	17	43,217,196 - 43,232,828 (+)	NCBI
Rnor_6.0	17	45,247,830 - 45,263,422 (+)	NCBI

Sequence:

show sequence

TCGGGTTCCCTCCTGTTACGGTCCTCCCGCGGGGGCCGGCTGCTTGCGGGTGGTGGGGATGGGACAAAACCTCTTCCTCCGCGGCCTAATGGCTCCGGGAAAATAAAATCGGTGGCTACTTGGGCCGA
GCGCCGGACAGGGCCTCGGGCGCCTCGCCTCAGGCCGGTTCCGGGTGTCTGGTCAGTCTCAGGGCGTTTGGCGATGGGATTCTCGGGTCTTGTACTTAAGCTTTGAAAATGGGAGACGTCACAGTTTT
GCTTTTCCTGGAGACAAGTGGGAGGAAGAGCTTGAGAAACAGGAGGAGCATCTAACAGTGAAGAAGGATAAGGACCCTGGTTATTTTGCAGAAATACAACTCACAACTACATTGAAACAGGAGAACTG
CTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCCTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGTCTCCCCATTGGCAGAGGAGACC
AGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGACGCAGCAGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTATGCAGACAGTGGCTGCGGCC
AGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGAGAGGAGGTGGTGGCAC
TGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAGGTTCCAGATGATGACGATGGGCAGGAACTCCTTTGTTCCAAGGCAGTACTGTTGACATCAGCTCAAGGCTCAGAAAGTAGCCAG
ATGGAGTCCATGGAGCCTTTGCTTAAACAGGAATCTTTGGGATCCCTGCCCTCAGAAGTTAGAGTCACCCAGGCAGGGCATTGTGGAGAAGATGGAGTGACAGCTACCAGGCTCACATCAGAGCTGCA
GGGGCTGCTGAAAATGGAAGATGTAGCCCCAGGCCTTTCCCCGAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGAAATGCAGGAGAACTCTGGCAGCCTGGTTTCCCTGGATG
AGAACATGCAAACTAAGGTTAGGGACTTGCCTCCAGCTGAAGAAAACACAGAACAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCAGATTCCTACAGGTACAGAAGCCAGTGAG
CAGGAAGGCAAGTTACAGACAACACAGAAGAATGCCACGGGAAACAGGCGGTTCTACTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATT
GAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGGAGCTCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACA
GCTCAGATCTCATCAAGCACCAGAGAACCCACACTGGAGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATTCACACTGGGGAGAAG
CCATACCAGTGCAACATGTGTCCCAAAGCCTTTAGGCGTAGCTCACATCTCCTGAGACATCAGAGGACCCACACTGGGGATAAAGATTTTTTTGTTCCAGAACCTTACTGGGAAAGTCAGAGTAGGGT
GGAAAGCCATTGGGAAAATATTGAGACTCCTGTGTCTTATCAATGCAATGATTGTGAGAGAAGTTTCAGTAGGATTACAAGCCTTATTGAACACCAAAAAGTACACACTGGTGAGAAGCCCTTTGAAT
GCCAGACCTGTGGAAAAGGCTTCACCCGACCTTCATACCTTATTCAACATCAGAGAAGACACACGGGGAAGAAAACTTCTGTCACAGTGACCCCTGCTGTACATTCCGAAGTTGGTGTTCAACTGTCA
TTGAACTGAAGCCGCTCTGGAGCTCTTAATGACTGCAGAAGTCATAGGCTAGGGCTCTATTTAATAATGTACATCCTCAGATATTAGGAATCTGACTAAGACTTATTATCTTCTACATTCTAGAAGGT
GACTATAAAAAAAAACTTATTTCATAGGAGAGTTGTCTGCAAGAGTTCTAACCTATTGGAATTAAATGGGCTTCCTGACTGTCAAATTGCCTTCCCTTGGCCTGCACTTCCTGTCTCTTGAGGGAAAG
GTTATGCTTTTTTTGGGAGGGGTGGGGGTGGGGGAAGTTACTCTGACCCTTCTTTAGGCTAATGAGCCCTTCACGTGTGGTCAGACTTGGAACTCTTATGTCCTGCTTTGTGCCTTGTATACAGGTGC
TAANAAACAAACATTTATTAAATATACTGGTGAGATTTCCTACATAGCTCTGAAAACCCATTATCTGGAAATTCTCACCAAGGCCATTTGTATATCTTTGAAAAAAAAAGATAATGTTTTAGATTGAA
TCAATGTAGTACTGCTTTGTTTTTGTTTTTTGCCAAGTACCCCAACTTGGCAGGGAAGAGGTGAAGGTGAGGTTATTGTGCTAGAATTCTTTAACTCTTTACCTAATTTAGGAATTCTGTGAGAGTGC
CTTAAATAGCTTTCTTAGCATTAAGTCATTGTGAATGTGCCACCCATGGAATTCCACTAATATTTTTTTCCTGTTAATTTTGTTACTCTTGAGAGAACAGAAAAGAAAAGAAAAAGTTAAAAAAAAAA
AACTTTCCTACTCATGTAGTGTGAAAATCAGTTTCAGAATAAAGTGATCAATGTCTAAGG

hide sequence

RefSeq Acc Id:

XM_039095714 ⟹ XP_038951642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,917 - 47,928,553 (+)	NCBI
mRatBN7.2	17	43,217,196 - 43,232,828 (+)	NCBI

RefSeq Acc Id:

XM_039095715 ⟹ XP_038951643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,934 - 47,928,553 (+)	NCBI
mRatBN7.2	17	43,217,175 - 43,232,828 (+)	NCBI

RefSeq Acc Id:

XM_039095717 ⟹ XP_038951645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,920,826 - 47,928,553 (+)	NCBI
mRatBN7.2	17	43,225,105 - 43,232,828 (+)	NCBI

RefSeq Acc Id:

XM_039095718 ⟹ XP_038951646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,931 - 47,928,553 (+)	NCBI
mRatBN7.2	17	43,217,195 - 43,231,986 (+)	NCBI

RefSeq Acc Id:

XM_063276448 ⟹ XP_063132518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,917 - 47,928,553 (+)	NCBI

RefSeq Acc Id:

XM_063276449 ⟹ XP_063132519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,917 - 47,928,553 (+)	NCBI

RefSeq Acc Id:

XM_063276450 ⟹ XP_063132520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,947 - 47,928,553 (+)	NCBI

RefSeq Acc Id:

XM_063276451 ⟹ XP_063132521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,884 - 47,928,553 (+)	NCBI

RefSeq Acc Id:

XM_063276452 ⟹ XP_063132522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,917 - 47,928,553 (+)	NCBI

RefSeq Acc Id:

XM_063276453 ⟹ XP_063132523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,884 - 47,928,553 (+)	NCBI

RefSeq Acc Id:

XM_063276454 ⟹ XP_063132524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,917 - 47,928,553 (+)	NCBI

RefSeq Acc Id:

XM_063276455 ⟹ XP_063132525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,903 - 47,928,553 (+)	NCBI

RefSeq Acc Id:

XM_063276456 ⟹ XP_063132526

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,900 - 47,928,553 (+)	NCBI

RefSeq Acc Id:

XM_063276457 ⟹ XP_063132527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	47,912,816 - 47,928,553 (+)	NCBI


Protein RefSeqs	NP_001012053	(Get FASTA)	NCBI Sequence Viewer
	XP_006254161	(Get FASTA)	NCBI Sequence Viewer
	XP_006254163	(Get FASTA)	NCBI Sequence Viewer
	XP_008769948	(Get FASTA)	NCBI Sequence Viewer
	XP_038951642	(Get FASTA)	NCBI Sequence Viewer
	XP_038951643	(Get FASTA)	NCBI Sequence Viewer
	XP_038951645	(Get FASTA)	NCBI Sequence Viewer
	XP_038951646	(Get FASTA)	NCBI Sequence Viewer
	XP_063132518	(Get FASTA)	NCBI Sequence Viewer
	XP_063132519	(Get FASTA)	NCBI Sequence Viewer
	XP_063132520	(Get FASTA)	NCBI Sequence Viewer
	XP_063132521	(Get FASTA)	NCBI Sequence Viewer
	XP_063132522	(Get FASTA)	NCBI Sequence Viewer
	XP_063132523	(Get FASTA)	NCBI Sequence Viewer
	XP_063132524	(Get FASTA)	NCBI Sequence Viewer
	XP_063132525	(Get FASTA)	NCBI Sequence Viewer
	XP_063132526	(Get FASTA)	NCBI Sequence Viewer
	XP_063132527	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89847	(Get FASTA)	NCBI Sequence Viewer
	EDL84542	(Get FASTA)	NCBI Sequence Viewer
	EDL84543	(Get FASTA)	NCBI Sequence Viewer
	EDL84544	(Get FASTA)	NCBI Sequence Viewer
	EDL84545	(Get FASTA)	NCBI Sequence Viewer
	EDL84546	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069061
	ENSRNOP00000069061.1
	ENSRNOP00000072953.2

RefSeq Acc Id:

NP_001012053 ⟸ NM_001012053

- UniProtKB:

F7DP88 (UniProtKB/TrEMBL), Q5FVP7 (UniProtKB/TrEMBL), A6KN76 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MARESRESTTLDSHSAEDQMELLVIKVEQEEVSPLAEETSWLGSPGPDRSRQRFRAFRYPDAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQHPDSGEEVVALLEY
LDRQLDETPPQVPDDDDGQELLCSKAVLLTSAQGSESSQMESMEPLLKQESLGSLPSEVRVTQAGHCGEDGVTATRLTSELQGLLKMEDVAPGLSPRWTEQDSSQMNLYKDEMQENSGSLVSLDENMQ
TKVRDLPPAEENTEQKPEQTVCFLGEDTVQIPTGTEASEQEGKLQTTQKNATGNRRFYCRECGKSFAQSSGLSKHKRIHTGLKPYECEECGKAFIGSSALIIHQRVHTGEKPYECEECGKAFSHSSDL
IKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHRIHTGEKPYQCNMCPKAFRRSSHLLRHQRTHTGDKDFFVPEPYWESQSRVESHWENIETPVSYQCNDCERSFSRITSLIEHQKVHTGEKPFECQTC
GKGFTRPSYLIQHQRRHTGKKTSVTVTPAVHSEVGVQLSLN

hide sequence

RefSeq Acc Id:	XP_006254161 ⟸ XM_006254099
- Peptide Label:	isoform X1
- UniProtKB:	F7DP88 (UniProtKB/TrEMBL), A6KN76 (UniProtKB/TrEMBL), Q5FVP7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARESRESTTLDSHSAEDQMELLVIKVEQEEVSPLAEETSWLGSPGPDRSRQRFRAFRYPDAAG PRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQHPDSGEEVVALLEYLDRQLDETPPQVPDDDDGQELLCSKAVLLTSAQGSESSQMESMEPLLKQESLGSLPSEVRVTQA GHCGEDGVTATRLTSELQGLLKMEDVAPGLSPRWTEQDSSQMNLYKDEMQENSGSLVSLDENMQTKVRDLPPAEENTEQKPEQTVCFLGEDTVQIPTGTEASEQEGKLQTTQKNATGNRRFYCRECGK SFAQSSGLSKHKRIHTGLKPYECEECGKAFIGSSALIIHQRVHTGEKPYECEECGKAFSHSSDLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHRIHTGEKPYQCNMCPKAFRRSSHLLRHQRTHT GDKDFFVPEPYWESQSRVESHWENIETPVSYQCNDCERSFSRITSLIEHQKVHTGEKPFECQTCGKGFTRPSYLIQHQRRHTGKKTSVTVTPAVHSEVGVQLSLN hide sequence

RefSeq Acc Id:	XP_006254163 ⟸ XM_006254101
- Peptide Label:	isoform X1
- UniProtKB:	F7DP88 (UniProtKB/TrEMBL), A6KN76 (UniProtKB/TrEMBL), Q5FVP7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARESRESTTLDSHSAEDQMELLVIKVEQEEVSPLAEETSWLGSPGPDRSRQRFRAFRYPDAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQHPDSGEEVVALLEY LDRQLDETPPQVPDDDDGQELLCSKAVLLTSAQGSESSQMESMEPLLKQESLGSLPSEVRVTQAGHCGEDGVTATRLTSELQGLLKMEDVAPGLSPRWTEQDSSQMNLYKDEMQENSGSLVSLDENMQ TKVRDLPPAEENTEQKPEQTVCFLGEDTVQIPTGTEASEQEGKLQTTQKNATGNRRFYCRECGKSFAQSSGLSKHKRIHTGLKPYECEECGKAFIGSSALIIHQRVHTGEKPYECEECGKAFSHSSDL IKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHRIHTGEKPYQCNMCPKAFRRSSHLLRHQRTHTGDKDFFVPEPYWESQSRVESHWENIETPVSYQCNDCERSFSRITSLIEHQKVHTGEKPFECQTC GKGFTRPSYLIQHQRRHTGKKTSVTVTPAVHSEVGVQLSLN hide sequence

RefSeq Acc Id:	XP_008769948 ⟸ XM_008771726
- Peptide Label:	isoform X1
- UniProtKB:	F7DP88 (UniProtKB/TrEMBL), A6KN76 (UniProtKB/TrEMBL), Q5FVP7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARESRESTTLDSHSAEDQMELLVIKVEQEEVSPLAEETSWLGSPGPDRSRQRFRAFRYPDAAG PRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQHPDSGEEVVALLEYLDRQLDETPPQVPDDDDGQELLCSKAVLLTSAQGSESSQMESMEPLLKQESLGSLPSEVRVTQA GHCGEDGVTATRLTSELQGLLKMEDVAPGLSPRWTEQDSSQMNLYKDEMQENSGSLVSLDENMQTKVRDLPPAEENTEQKPEQTVCFLGEDTVQIPTGTEASEQEGKLQTTQKNATGNRRFYCRECGK SFAQSSGLSKHKRIHTGLKPYECEECGKAFIGSSALIIHQRVHTGEKPYECEECGKAFSHSSDLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHRIHTGEKPYQCNMCPKAFRRSSHLLRHQRTHT GDKDFFVPEPYWESQSRVESHWENIETPVSYQCNDCERSFSRITSLIEHQKVHTGEKPFECQTCGKGFTRPSYLIQHQRRHTGKKTSVTVTPAVHSEVGVQLSLN hide sequence

Ensembl Acc Id:

ENSRNOP00000072953 ⟸ ENSRNOT00000080655

Protein Domains

C2H2-type SCAN box

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5FVP7-F1-model_v2	AlphaFold	Q5FVP7	1-554	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700495

Promoter ID:

EPDNEW_R11018

Type:

multiple initiation site

Name:

Zkscan3_1

Description:

zinc finger with KRAB and SCAN domains 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	45,247,782 - 45,247,842	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-9211	BioCyc
Ensembl Genes	ENSRNOG00000055000	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000080655.2	UniProtKB/TrEMBL
	ENSRNOT00000081063	ENTREZGENE
	ENSRNOT00000081063.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7373658	IMAGE-MGC_LOAD
InterPro	Ikaros_C2H2-ZF	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	SCAN-C2H2_zinc_finger	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Tscrpt_reg_SCAN	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:306977	UniProtKB/TrEMBL
MGC_CLONE	MGC:108865	IMAGE-MGC_LOAD
NCBI Gene	306977	ENTREZGENE
PANTHER	PROTEIN ZBED8-RELATED	UniProtKB/TrEMBL
	SCAN BOX DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 501	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN-RELATED	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zkscan3	PhenoGen
PROSITE	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000055000	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K493_RAT	UniProtKB/TrEMBL
	A6KN76	ENTREZGENE, UniProtKB/TrEMBL
	F7DP88	ENTREZGENE, UniProtKB/TrEMBL
	Q5FVP7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Zkscan3	zinc finger with KRAB and SCAN domains 3	Zfp307	zinc finger protein 307	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Zfp307	zinc finger protein 307	Zfp307_predicted	zinc finger protein 307 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp307_predicted	zinc finger protein 307 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

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