H1f4 (H1.4 linker histone, cluster member)

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Gene: H1f4 (H1.4 linker histone, cluster member) Rattus norvegicus

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Symbol:

H1f4

Name:

H1.4 linker histone, cluster member

RGD ID:

2776

Description:

Exhibits calcium ion binding activity; double-stranded DNA binding activity; and purine nucleotide binding activity. Predicted to be involved in chromatin organization and negative regulation of transcription by RNA polymerase II. Localizes to nuclear nucleosome. Orthologous to human H1-4 (H1.4 linker histone, cluster member); INTERACTS WITH 4-amino-2,6-dinitrotoluene; 6-propyl-2-thiouracil; 7,12-dimethyltetraphene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

H1 histone family, member 4; H1-4; H14; H1d; Hist1h1c; Hist1h1d; Hist1h1e; Histone 1d; histone cluster 1 H1 family member e; histone cluster 1, H1d; histone cluster 1, H1e; histone H1.2; histone H1.4

Orthologs:

Homo sapiens (human) : H1-4 (H1.4 linker histone, cluster member) HGNC Alliance
Mus musculus (house mouse) : H1f4 (H1.4 linker histone, cluster member) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : H1-4 (H1.4 linker histone, cluster member)
Pan paniscus (bonobo/pygmy chimpanzee) : H1-4 (H1.4 linker histone, cluster member)
Canis lupus familiaris (dog) : H1-4 (H1.4 linker histone, cluster member)
Chlorocebus sabaeus (African green monkey) : H1-4 (H1.4 linker histone, cluster member)
Heterocephalus glaber (naked mole-rat) : H1-4 (H1.4 linker histone, cluster member)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	H1-4 (H1.4 linker histone, cluster member)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB
Mus musculus (house mouse):	H1f4 (H1.4 linker histone, cluster member)	HGNC	NCBI, OMA, Inparanoid, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	H1-4 (H1.4 linker histone, cluster member)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	H1-4 (H1.4 linker histone, cluster member)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	H1-4 (H1.4 linker histone, cluster member)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	H1-4 (H1.4 linker histone, cluster member)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	H1-4 (H1.4 linker histone, cluster member)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	H1-1 (H1.1 linker histone, cluster member)	HGNC	OrthoDB
Homo sapiens (human):	H1-3 (H1.3 linker histone, cluster member)	HGNC	OrthoDB
Homo sapiens (human):	H1-2 (H1.2 linker histone, cluster member)	HGNC	OrthoDB
Homo sapiens (human):	H1-5 (H1.5 linker histone, cluster member)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	H1-4 (H1.4 linker histone, cluster member)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	H1f4 (H1.4 linker histone, cluster member)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	si:dkey-261m9.12	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	zgc:110216	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	si:ch211-103n10.5	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	si:ch211-113a14.24	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	si:dkey-23a13.9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	si:dkey-108k21.10	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	HHO1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	His1:CG33825	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	hil-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA)
Caenorhabditis elegans (roundworm):	hil-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA)
Caenorhabditis elegans (roundworm):	hil-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA)
Caenorhabditis elegans (roundworm):	hil-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA)
Caenorhabditis elegans (roundworm):	hil-6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA)
Drosophila melanogaster (fruit fly):	His1:CG33801	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	His1:CG33807	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	His1:CG33834	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	17	43,734,461 - 43,735,120 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	43,734,461 - 43,735,120 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	45,588,398 - 45,589,057 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	17	41,119,030 - 41,119,689 (+)	NCBI		Celera
Cytogenetic Map	17	p11	NCBI

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Model

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Disease Annotations

Gene-Chemical Interaction Annotations

Gene Ontology Annotations

References - curated

References - uncurated

Genomics

Comparative Map Data

QTLs in Region (Rnor_6.0)

miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences

Protein Sequences

Transcriptome

Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links

Nomenclature History

RGD Curation Notes

More on H1f4
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	2776
Created:	2000-05-25
Species:	Rattus norvegicus
Last Modified:	2020-08-20
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - ClinVar

Imported Annotations - CTD

Imported Annotations - OMIM