RGD1307443 (similar to mKIAA0319 protein) - Rat Genome Database

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Gene: RGD1307443 (similar to mKIAA0319 protein) Rattus norvegicus
Analyze
Symbol: RGD1307443
Name: similar to mKIAA0319 protein
RGD ID: 1307443
Description: Predicted to be involved in negative regulation of dendrite development and neuron migration. Predicted to act upstream of or within several processes, including negative regulation of axon extension involved in regeneration; positive regulation of SMAD protein signal transduction; and response to auditory stimulus. Predicted to be located in early endosome. Predicted to be active in cytoplasmic vesicle and plasma membrane. Orthologous to human KIAA0319 (KIAA0319); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dyslexia susceptibility 2; dyslexia-associated protein KIAA0319 homolog; KIAA0319 protein; LOC361244
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21740,162,512 - 40,226,666 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1740,165,084 - 40,225,653 (-)Ensembl
Rnor_6.01742,163,245 - 42,226,725 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1742,165,817 - 42,226,377 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01744,031,044 - 44,094,370 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41747,226,680 - 47,287,240 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11747,230,128 - 47,279,391 (-)NCBI
Celera1739,802,603 - 39,862,958 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15057822   PMID:16600991   PMID:16989952   PMID:19419997   PMID:19679544   PMID:23220223   PMID:23395846   PMID:24871331   PMID:27510895   PMID:28334068   PMID:29045729  


Genomics

Comparative Map Data
RGD1307443
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21740,162,512 - 40,226,666 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1740,165,084 - 40,225,653 (-)Ensembl
Rnor_6.01742,163,245 - 42,226,725 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1742,165,817 - 42,226,377 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01744,031,044 - 44,094,370 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41747,226,680 - 47,287,240 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11747,230,128 - 47,279,391 (-)NCBI
Celera1739,802,603 - 39,862,958 (-)NCBICelera
Cytogenetic Map17p11NCBI
KIAA0319
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38624,540,141 - 24,646,191 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl624,544,104 - 24,646,191 (-)EnsemblGRCh38hg38GRCh38
GRCh37624,544,335 - 24,646,419 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36624,652,311 - 24,754,362 (-)NCBINCBI36hg18NCBI36
Celera625,777,709 - 25,879,725 (-)NCBI
Cytogenetic Map6p22.3NCBI
HuRef624,493,749 - 24,595,804 (-)NCBIHuRef
CHM1_1624,548,492 - 24,650,521 (-)NCBICHM1_1
T2T-CHM13v2.0624,414,072 - 24,516,155 (-)NCBI
D130043K22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391325,029,114 - 25,085,422 (+)NCBIGRCm39mm39
GRCm39 Ensembl1325,029,118 - 25,085,253 (+)Ensembl
GRCm381324,845,131 - 24,901,439 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1324,845,135 - 24,901,270 (+)EnsemblGRCm38mm10GRCm38
MGSCv371324,937,000 - 24,993,139 (+)NCBIGRCm37mm9NCBIm37
MGSCv361324,852,596 - 24,908,735 (+)NCBImm8
Celera1325,075,796 - 25,131,935 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
Kiaa0319
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554832,413,181 - 2,462,735 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554832,404,061 - 2,463,210 (+)NCBIChiLan1.0ChiLan1.0
KIAA0319
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1624,713,922 - 24,815,300 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl624,713,922 - 24,815,300 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0624,377,666 - 24,483,388 (-)NCBIMhudiblu_PPA_v0panPan3
KIAA0319
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13522,589,103 - 22,689,549 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3522,591,353 - 22,652,292 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3522,556,996 - 22,657,004 (-)NCBI
ROS_Cfam_1.03522,711,229 - 22,811,382 (-)NCBI
ROS_Cfam_1.0 Ensembl3522,711,238 - 22,810,979 (-)Ensembl
UMICH_Zoey_3.13522,516,640 - 22,574,230 (-)NCBI
UNSW_CanFamBas_1.03522,564,620 - 22,664,450 (-)NCBI
UU_Cfam_GSD_1.03524,000,847 - 24,100,756 (-)NCBI
Kiaa0319
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049462,708,741 - 2,751,526 (+)NCBI
SpeTri2.0NW_004936671870,107 - 912,727 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA0319
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl719,383,196 - 19,486,232 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1719,383,189 - 19,487,669 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2720,533,670 - 20,639,029 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIAA0319
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11747,603,506 - 47,702,154 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1747,603,705 - 47,696,302 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604424,471,322 - 24,576,965 (-)NCBIVero_WHO_p1.0
Kiaa0319
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247562,377,846 - 2,459,936 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247562,377,573 - 2,464,766 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D17Rat19  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21740,223,952 - 40,224,109 (+)MAPPERmRatBN7.2
Rnor_6.01742,224,679 - 42,224,833NCBIRnor6.0
Rnor_5.01744,092,478 - 44,092,632UniSTSRnor5.0
RGSC_v3.41747,285,541 - 47,285,696RGDRGSC3.4
RGSC_v3.41747,285,542 - 47,285,696UniSTSRGSC3.4
RGSC_v3.11747,288,382 - 47,288,537RGD
Celera1739,861,260 - 39,861,414UniSTS
SHRSP x BN Map1730.3699UniSTS
SHRSP x BN Map1730.3699RGD
FHH x ACI Map1734.46RGD
Cytogenetic Map17p11UniSTS
D17Got45  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21740,200,266 - 40,200,450 (+)MAPPERmRatBN7.2
Rnor_6.01742,200,997 - 42,201,180NCBIRnor6.0
Rnor_5.01744,068,796 - 44,068,979UniSTSRnor5.0
RGSC_v3.41747,261,859 - 47,262,043RGDRGSC3.4
RGSC_v3.41747,261,860 - 47,262,043UniSTSRGSC3.4
RGSC_v3.11747,264,700 - 47,264,884RGD
Celera1739,837,565 - 39,837,748UniSTS
RH 2.0 Map17314.3RGD
Cytogenetic Map17p11UniSTS
BF403768  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21740,165,643 - 40,165,808 (+)MAPPERmRatBN7.2
Rnor_6.01742,166,377 - 42,166,541NCBIRnor6.0
Rnor_5.01744,034,176 - 44,034,340UniSTSRnor5.0
RGSC_v3.41747,227,240 - 47,227,404UniSTSRGSC3.4
Celera1739,803,163 - 39,803,327UniSTS
Cytogenetic Map17p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:67
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000024536
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 34
Low 3 38 11 11
Below cutoff 5 25 10 18 10 7 7 2 2 24 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000024536   ⟹   ENSRNOP00000024536
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,165,084 - 40,225,653 (-)Ensembl
Rnor_6.0 Ensembl1742,165,817 - 42,226,377 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115483   ⟹   ENSRNOP00000082823
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1740,165,084 - 40,212,941 (-)Ensembl
RefSeq Acc Id: NM_001197023   ⟹   NP_001183952
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,165,084 - 40,225,653 (-)NCBI
Rnor_6.01742,165,817 - 42,226,377 (-)NCBI
Rnor_5.01744,031,044 - 44,094,370 (-)NCBI
Celera1739,802,603 - 39,862,958 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253936   ⟹   XP_006253998
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,162,512 - 40,226,659 (-)NCBI
Rnor_6.01742,163,245 - 42,226,725 (-)NCBI
Rnor_5.01744,031,044 - 44,094,370 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600604   ⟹   XP_017456093
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,162,512 - 40,226,658 (-)NCBI
Rnor_6.01742,163,245 - 42,226,724 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095885   ⟹   XP_038951813
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,162,512 - 40,226,657 (-)NCBI
RefSeq Acc Id: XM_039095886   ⟹   XP_038951814
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,162,512 - 40,226,662 (-)NCBI
RefSeq Acc Id: XR_005495299
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,165,732 - 40,226,661 (-)NCBI
RefSeq Acc Id: XR_005495300
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21740,192,949 - 40,226,666 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001183952   ⟸   NM_001197023
- Peptide Label: precursor
- UniProtKB: P0CI71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006253998   ⟸   XM_006253936
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456093   ⟸   XM_017600604
- Peptide Label: isoform X1
- UniProtKB: P0CI71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024536   ⟸   ENSRNOT00000024536
RefSeq Acc Id: XP_038951814   ⟸   XM_039095886
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038951813   ⟸   XM_039095885
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000082823   ⟸   ENSRNOT00000115483
Protein Domains
MANSC   PKD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P0CI71-F1-model_v2 AlphaFold P0CI71 1-1081 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
17 42182431 42182432 G T snv WKY/N (MCW)
17 42212107 42212108 G A snv GK/FarMcwi (2019), GK/Ox (RGD)
17 42213161 42213162 A G snv FHH/EurMcwi (RGD), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (RGD), FHH/EurMcwi (2019)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
17 44079906 44079907 G A snv GK/Ox (KNAW)
17 44080960 44080961 A G snv FHL/EurMcwi (MCW), MR/N (KNAW), FHL/EurMcwi (KNAW), Crl:SD (UDEL), FHH/EurMcwi (MCW), FHH/EurMcwi (KNAW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307443 AgrOrtholog
BioCyc Gene G2FUF-9425 BioCyc
Ensembl Genes ENSRNOG00000018141 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000024536 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000082823.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024536 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000115483.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro Ig-like_fold UniProtKB/Swiss-Prot
  KIAA0319-like UniProtKB/Swiss-Prot
  MANSC_dom UniProtKB/Swiss-Prot
  MANSC_N UniProtKB/Swiss-Prot
  PKD/Chitinase_dom UniProtKB/Swiss-Prot
  PKD_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:361244 UniProtKB/Swiss-Prot
NCBI Gene 361244 ENTREZGENE
PANTHER PTHR46182 UniProtKB/Swiss-Prot
PhenoGen RGD1307443 PhenoGen
PROSITE MANSC UniProtKB/Swiss-Prot
SMART MANEC UniProtKB/Swiss-Prot
  PKD UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49299 UniProtKB/Swiss-Prot
UniProt A0A8I5ZUN7_RAT UniProtKB/TrEMBL
  K0319_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 RGD1307443  similar to mKIAA0319 protein   RGD1307443_predicted  similar to mKIAA0319 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1307443_predicted  similar to mKIAA0319 protein (predicted)  LOC361244_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361244_predicted  similar to mKIAA0319 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL