Slc17a3 (solute carrier family 17 member 3) - Rat Genome Database

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Gene: Slc17a3 (solute carrier family 17 member 3) Rattus norvegicus
Analyze
Symbol: Slc17a3
Name: solute carrier family 17 member 3
RGD ID: 628815
Description: Predicted to enable several functions, including anion transmembrane transporter activity; toxin transmembrane transporter activity; and urate transmembrane transporter activity. Predicted to be involved in organic anion transport; urate metabolic process; and xenobiotic detoxification by transmembrane export across the plasma membrane. Predicted to be located in apical plasma membrane; endoplasmic reticulum membrane; and perinuclear region of cytoplasm. Predicted to be active in lysosome and plasma membrane. Human ortholog(s) of this gene implicated in gout. Orthologous to human SLC17A3 (solute carrier family 17 member 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Na/Pi cotransporter 4; Rnpt4; sodium-dependent phosphate transport protein 4; sodium-phosphate cotransporter; solute carrier family 17 (organic anion transporter), member 3; solute carrier family 17 (sodium phosphate), member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21741,270,804 - 41,300,132 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,270,812 - 41,295,256 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,343,893 - 41,369,438 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01742,947,941 - 42,973,483 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01741,226,512 - 41,251,991 (-)NCBIRnor_WKY
Rnor_6.01743,518,760 - 43,545,160 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,518,655 - 43,543,185 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01745,373,769 - 45,400,115 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,599,049 - 48,620,786 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11748,601,889 - 48,623,627 (+)NCBI
Celera1740,901,815 - 40,925,982 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
gout  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Molecular effects of volume expansion on the renal sodium phosphate cotransporter. Puschett JB, etal., Am J Med Sci 2003 Jul;326(1):1-8.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12806205   PMID:15505377   PMID:18834626   PMID:20053405   PMID:20162743   PMID:20810651  


Genomics

Comparative Map Data
Slc17a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21741,270,804 - 41,300,132 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,270,812 - 41,295,256 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,343,893 - 41,369,438 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01742,947,941 - 42,973,483 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01741,226,512 - 41,251,991 (-)NCBIRnor_WKY
Rnor_6.01743,518,760 - 43,545,160 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,518,655 - 43,543,185 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01745,373,769 - 45,400,115 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,599,049 - 48,620,786 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11748,601,889 - 48,623,627 (+)NCBI
Celera1740,901,815 - 40,925,982 (-)NCBICelera
Cytogenetic Map17p11NCBI
SLC17A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38625,844,856 - 25,874,243 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl625,833,066 - 25,882,286 (-)EnsemblGRCh38hg38GRCh38
GRCh37625,845,084 - 25,874,471 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36625,953,307 - 25,982,450 (-)NCBINCBI36Build 36hg18NCBI36
Build 34625,953,308 - 25,990,493NCBI
Celera627,072,523 - 27,101,662 (-)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef625,788,565 - 25,817,700 (-)NCBIHuRef
CHM1_1625,847,566 - 25,876,701 (-)NCBICHM1_1
T2T-CHM13v2.0625,710,672 - 25,740,056 (-)NCBIT2T-CHM13v2.0
Slc17a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391324,020,905 - 24,044,701 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1324,023,417 - 24,044,699 (+)EnsemblGRCm39 Ensembl
GRCm381323,836,922 - 23,860,718 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,839,434 - 23,860,716 (+)EnsemblGRCm38mm10GRCm38
MGSCv371323,931,303 - 23,952,583 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361323,847,094 - 23,867,208 (+)NCBIMGSCv36mm8
Celera1324,071,131 - 24,092,378 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
Slc17a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554831,234,975 - 1,260,158 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554831,235,122 - 1,260,161 (+)NCBIChiLan1.0ChiLan1.0
SLC17A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1626,336,696 - 26,365,958 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0625,678,412 - 25,707,948 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC17A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13523,792,281 - 23,831,893 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3523,792,286 - 23,809,001 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3523,694,675 - 23,734,306 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03523,907,710 - 23,954,114 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3523,907,888 - 23,972,065 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13523,723,922 - 23,770,263 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03523,774,858 - 23,814,531 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,207,713 - 25,247,557 (-)NCBIUU_Cfam_GSD_1.0
SLC17A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,596,549 - 20,643,868 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,591,797 - 20,643,754 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2721,829,971 - 21,836,343 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC17A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,376,480 - 46,404,371 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1746,377,386 - 46,404,372 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604425,784,564 - 25,824,068 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc17a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247561,145,554 - 1,163,081 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247561,136,641 - 1,162,087 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc17a3
102 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:349
Count of miRNA genes:205
Interacting mature miRNAs:240
Transcripts:ENSRNOT00000029626
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat

Markers in Region
RH127304  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21741,270,834 - 41,271,032 (+)MAPPERmRatBN7.2
Rnor_6.01743,518,784 - 43,518,981NCBIRnor6.0
Rnor_5.01745,373,793 - 45,373,990UniSTSRnor5.0
Celera1740,901,839 - 40,902,036UniSTS
Cytogenetic Map17p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 35 35 35 29 2
Low 7 4 4 2 16 2
Below cutoff 9 15 2 16 2 8 8 9 4 15 7 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_153622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB025223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB025224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC130391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000029626   ⟹   ENSRNOP00000029152
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,270,812 - 41,295,256 (-)Ensembl
Rnor_6.0 Ensembl1743,518,761 - 43,543,185 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080684   ⟹   ENSRNOP00000074656
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,273,706 - 41,295,243 (-)Ensembl
Rnor_6.0 Ensembl1743,521,655 - 43,543,172 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082719   ⟹   ENSRNOP00000070109
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,270,812 - 41,295,256 (-)Ensembl
Rnor_6.0 Ensembl1743,518,761 - 43,543,185 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091749   ⟹   ENSRNOP00000070495
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,270,812 - 41,295,256 (-)Ensembl
Rnor_6.0 Ensembl1743,518,655 - 43,537,293 (-)Ensembl
RefSeq Acc Id: NM_153622   ⟹   NP_705886
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,270,811 - 41,295,256 (-)NCBI
Rnor_6.01743,518,760 - 43,543,185 (-)NCBI
Rnor_5.01745,373,769 - 45,400,115 (-)NCBI
RGSC_v3.41748,599,049 - 48,620,786 (+)RGD
Celera1740,901,815 - 40,925,982 (-)RGD
Sequence:
RefSeq Acc Id: XM_006253941   ⟹   XP_006254003
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,270,804 - 41,300,128 (-)NCBI
Rnor_6.01743,519,265 - 43,545,158 (-)NCBI
Rnor_5.01745,373,769 - 45,400,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253942   ⟹   XP_006254004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,273,705 - 41,300,128 (-)NCBI
Rnor_6.01743,521,653 - 43,545,159 (-)NCBI
Rnor_5.01745,373,769 - 45,400,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253946   ⟹   XP_006254008
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,270,811 - 41,299,659 (-)NCBI
Rnor_6.01743,518,760 - 43,545,156 (-)NCBI
Rnor_5.01745,373,769 - 45,400,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253947   ⟹   XP_006254009
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,270,804 - 41,300,129 (-)NCBI
Rnor_6.01743,519,368 - 43,545,160 (-)NCBI
Rnor_5.01745,373,769 - 45,400,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253948   ⟹   XP_006254010
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,271,316 - 41,287,468 (-)NCBI
Rnor_6.01743,519,265 - 43,535,444 (-)NCBI
Rnor_5.01745,373,769 - 45,400,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253950   ⟹   XP_006254012
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,271,316 - 41,300,130 (-)NCBI
Rnor_6.01743,519,265 - 43,545,159 (-)NCBI
Rnor_5.01745,373,769 - 45,400,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253951   ⟹   XP_006254013
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,271,316 - 41,299,662 (-)NCBI
Rnor_6.01743,519,265 - 43,545,156 (-)NCBI
Rnor_5.01745,373,769 - 45,400,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771623   ⟹   XP_008769845
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,271,316 - 41,300,129 (-)NCBI
Rnor_6.01743,519,265 - 43,545,159 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095420   ⟹   XP_038951348
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,271,316 - 41,299,662 (-)NCBI
RefSeq Acc Id: XM_039095421   ⟹   XP_038951349
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,275,495 - 41,300,132 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_705886   ⟸   NM_153622
- UniProtKB: Q8CJH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254008   ⟸   XM_006253946
- Peptide Label: isoform X2
- UniProtKB: E9PTR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254012   ⟸   XM_006253950
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006254003   ⟸   XM_006253941
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254013   ⟸   XM_006253951
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JY28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254010   ⟸   XM_006253948
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006254009   ⟸   XM_006253947
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006254004   ⟸   XM_006253942
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008769845   ⟸   XM_008771623
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000070109   ⟸   ENSRNOT00000082719
RefSeq Acc Id: ENSRNOP00000074656   ⟸   ENSRNOT00000080684
RefSeq Acc Id: ENSRNOP00000029152   ⟸   ENSRNOT00000029626
RefSeq Acc Id: ENSRNOP00000070495   ⟸   ENSRNOT00000091749
RefSeq Acc Id: XP_038951348   ⟸   XM_039095420
- Peptide Label: isoform X2
- UniProtKB: E9PTR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951349   ⟸   XM_039095421
- Peptide Label: isoform X7
Protein Domains
MFS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PTR8-F1-model_v2 AlphaFold E9PTR8 1-498 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700450
Promoter ID:EPDNEW_R10974
Type:multiple initiation site
Name:Slc17a3_1
Description:solute carrier family 17 member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01743,543,194 - 43,543,254EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628815 AgrOrtholog
BioCyc Gene G2FUF-9390 BioCyc
Ensembl Genes ENSRNOG00000032745 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000029152 ENTREZGENE
  ENSRNOP00000029152.4 UniProtKB/TrEMBL
  ENSRNOP00000070109.1 UniProtKB/TrEMBL
  ENSRNOP00000070495 ENTREZGENE
  ENSRNOP00000070495.2 UniProtKB/TrEMBL
  ENSRNOP00000074656.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029626 ENTREZGENE
  ENSRNOT00000029626.6 UniProtKB/TrEMBL
  ENSRNOT00000080684.2 UniProtKB/TrEMBL
  ENSRNOT00000082719.2 UniProtKB/TrEMBL
  ENSRNOT00000091749 ENTREZGENE
  ENSRNOT00000091749.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7110091 IMAGE-MGC_LOAD
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report rno:266730 UniProtKB/TrEMBL
MGC_CLONE MGC:93130 IMAGE-MGC_LOAD
NCBI Gene 266730 ENTREZGENE
Pfam MFS_1 UniProtKB/TrEMBL
PhenoGen Slc17a3 PhenoGen
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP MFS_gen_substrate_transporter UniProtKB/TrEMBL
UniProt A0A0G2JX26_RAT UniProtKB/TrEMBL
  A0A0G2JY28 ENTREZGENE, UniProtKB/TrEMBL
  E9PTR8 ENTREZGENE, UniProtKB/TrEMBL
  Q6AZ69_RAT UniProtKB/TrEMBL
  Q8CJH9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Slc17a3  solute carrier family 17 member 3  Slc17a3  solute carrier family 17 (organic anion transporter), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc17a3  solute carrier family 17 (organic anion transporter), member 3  Slc17a3  solute carrier family 17 (sodium phosphate), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Slc17a3  solute carrier family 17 (sodium phosphate), member 3    Na/Pi cotransporter 4  Name updated 1299863 APPROVED
2004-09-10 Slc17a3  Na/Pi cotransporter 4  Rnpt4    Symbol and Name updated 1299863 APPROVED
2003-02-27 Rnpt4  Na/Pi cotransporter 4      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_regulation function regulated by Diphor-1 704326