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Gene: SLC17A3 (solute carrier family 17 member 3) Pan paniscus

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Symbol:

SLC17A3

Name:

solute carrier family 17 member 3

RGD ID:

11858057

Description:

ENCODES a protein that exhibits efflux transmembrane transporter activity (ortholog); organic anion transmembrane transporter activity (ortholog); toxin transmembrane transporter activity (ortholog); INVOLVED IN organic anion transport (ortholog); urate metabolic process (ortholog); urate transport (ortholog); ASSOCIATED WITH gout (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sodium-dependent phosphate transport protein 4; solute carrier family 17 (sodium phosphate), member 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	40,490,853 - 40,520,394 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	36,492,314 - 36,521,841 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	25,678,412 - 25,707,948 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	26,336,696 - 26,365,958 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gout (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

organic anion transport (ISO)

urate metabolic process (ISO)

urate transport (ISO)

xenobiotic detoxification by transmembrane export across the plasma membrane (ISO)

Cellular Component

apical plasma membrane (ISO)

cytoplasm (ISO)

endoplasmic reticulum membrane (ISO)

perinuclear region of cytoplasm (ISO)

plasma membrane (ISO)

Molecular Function

efflux transmembrane transporter activity (ISO)

organic anion transmembrane transporter activity (ISO)

toxin transmembrane transporter activity (ISO)

urate transmembrane transporter activity (ISO)

voltage-gated monoatomic anion channel activity (ISO)

xenobiotic transmembrane transporter activity (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SLC17A3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	40,490,853 - 40,520,394 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	36,492,314 - 36,521,841 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	25,678,412 - 25,707,948 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	26,336,696 - 26,365,958 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SLC17A3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	25,844,856 - 25,874,243 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	25,833,066 - 25,882,286 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	25,845,084 - 25,874,471 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	25,953,307 - 25,982,450 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	25,953,308 - 25,990,493	NCBI
Celera	6	27,072,523 - 27,101,662 (-)	NCBI		Celera
Cytogenetic Map	6	p22.2	NCBI
HuRef	6	25,788,565 - 25,817,700 (-)	NCBI		HuRef
CHM1_1	6	25,847,566 - 25,876,701 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	25,710,672 - 25,740,056 (-)	NCBI		T2T-CHM13v2.0

Slc17a3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	24,020,905 - 24,044,701 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	24,023,417 - 24,044,699 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	23,836,922 - 23,860,718 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	23,839,434 - 23,860,716 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	23,931,303 - 23,952,583 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	23,847,094 - 23,867,208 (+)	NCBI		MGSCv36	mm8
Celera	13	24,071,131 - 24,092,378 (+)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI
cM Map	13	9.95	NCBI

Slc17a3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	41,698,679 - 41,729,057 (-)	NCBI		GRCr8
mRatBN7.2	17	41,270,804 - 41,300,132 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	41,270,812 - 41,295,256 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	41,343,893 - 41,369,438 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	42,947,941 - 42,973,483 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	41,226,512 - 41,251,991 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	43,518,760 - 43,545,160 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	43,518,655 - 43,543,185 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	45,373,769 - 45,400,115 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	48,599,049 - 48,620,786 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	48,601,889 - 48,623,627 (+)	NCBI
Celera	17	40,901,815 - 40,925,982 (-)	NCBI		Celera
Cytogenetic Map	17	p11	NCBI

Slc17a3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955483	1,234,975 - 1,260,158 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955483	1,235,122 - 1,260,161 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC17A3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	23,792,281 - 23,831,893 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	23,792,286 - 23,809,001 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	23,694,675 - 23,734,306 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	23,907,710 - 23,954,114 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	23,907,888 - 23,972,065 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	23,723,922 - 23,770,263 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	23,774,858 - 23,814,531 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	25,207,713 - 25,247,557 (-)	NCBI		UU_Cfam_GSD_1.0

SLC17A3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	20,596,549 - 20,643,868 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	20,591,797 - 20,643,754 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	21,829,971 - 21,836,343 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC17A3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	46,376,480 - 46,404,371 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	46,377,386 - 46,404,372 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	25,784,564 - 25,824,068 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc17a3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	1,145,554 - 1,163,081 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	1,136,641 - 1,162,087 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003804556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008961125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057302447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_610166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003804556 ⟹ XP_003804604

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	40,490,853 - 40,520,394 (-)	NCBI
NHGRI_mPanPan1	6	36,492,314 - 36,521,841 (-)	NCBI
Mhudiblu_PPA_v0	6	25,678,412 - 25,707,944 (-)	NCBI
PanPan1.1	6	26,336,696 - 26,365,958 (-)	NCBI

Sequence:

show sequence

GCTCCAAAAAGTCCAAGGGAGCAAGCTTGGAGGAAACGCTGGGTTCAACTTGAAGCCCTTCCAC
AGACATTAAGTCGGTGAAAACCATTCACTAGGAGAGGAGAAACACAATGGCCACCAAGACAGAG
TTGAGTCCCACAGCAAGGGAGAGCAAGAACGCACAAGATGTGCAAGTGGATGAGACACTGATCC
CCAGGAAAGTTCCAAGTTTATGTTCTGCTCGCTATGGAATAGCTCTCGTCTTACATTTCTGCAA
TTTCACAACGATAGCACAAAATGTCATCATGAACATCACCATGGTAGCCATGGTCAACAGCACA
AGCCCTCAATCCCAGCTCAATGACTCCTCTGAAGGGCTGCCTGTTGACTCATTTGGTGGCCTAA
GTAAAGCCCCAAAGAGTCTTCCTGCAAAGGCTCCTGTGTATGACTGGTCTCCTCAAATCCAAGG
CATCATCTTTGGTGCTGTTGGCTATGGTGGCATACTGACAATGGCTCCCAGTGGATACCTGGCT
GGAAGAGTAGGAACAAAGCGAGTGGTTGGCATTTCTTTGTTTGCAACTTCATTTCTCACTCTAT
GCATCCCTCCGGCCGCTGACTTTGGAATAGTCTTGCTCATTGTAACTCGAATAGTCCAGGGCCT
AAGCCAGTCCTCAATACTTGGGGGTCAGTTTGCAATTTGGGAAAAGTGGGGCCCTCCACAAGAA
CGAAGCAGACTCTGCAGCATTGCTTTATCAGGAATGTTACTGGGATGCTTTACTGCCATCCTCA
TAGGTGGCTTCATTAGTGAAACCCTTGGGTGGCCCTTTGTCTTCTATATCTTTGGAGGTGTTGG
CTGTGTCTGCTGCCTTCTCTGGTTTGTTGTGATTTATGATGACCCCGTTTCCTATCCATGGATA
AGCACCTCAGAAAAAGAATACATCATATCCTCCTTGAAACAACAGGTCAGGTCTTCTAAGCAGC
CTCTTCCCATCAAAGCTATGCTCAGATCTCTACCCATTTGGTCCATATGTTTAGGCTGTTTCAG
CCATCAATGGTTAGTTAGCACAATGATTGTATACATACCAACTTACATCAGCTCTGTGTACCAT
GTTAACATCAGAGACAATGGACTTCTATCTGCCCTTCCTTTTATTGTTGCCTGGGTCATAGGCA
TGGTGGGAGGCTATCTGGCAGATTTCCTTCTAACCAAAAAGTTTAGACTCATCACTGTGAGGAA
AATTGCCACAATTTTAGGAAGTCTCCCCTCTTCAGCACTCATTGTGTCTCTGCCTTACCTCAAT
TCCGGCTATATCACAGCAACTGCCTTGCTGACGCTCTCGTGCGGATTAAGCACATTGTGTCAGT
CAGGGATTTATATCAATGTCTTAGATATTGCTCCAAGGTATTCCAGTTTTCTCATGGGAGCATC
AAGAGGATTTTCGAGCATAGCACCTGTCATTGTACCCACTGTCAGCGGATTTCTTCTTAGTCAG
GACCCTGAGTTTGGGTGGAGGAATGTCTTCTTCTTGCTCTTTGCCGTTAACCTGTTAGGACTAC
TCTTCTACCTCATATTTGGAGAAGCAGATGTCCAAGAATGGGCTAAAGAGAGAAAACTCACTCG
TTTATGAAGTTATCCCACCTTGGATGGAAAAGTCATTAGGCACCGTATCGCATAAAATAGAAGG
CTTCCGTGATGAAAATACCAGTGAAAAGATTTTTTTTCCTATGGCTCTTTTCAATTATGAGATC
AGTTCATTATTTTATTCAGACTTTTTTTGAGAGAAATGTAAGATGAATAAAAATTCAAATAAAA
TGATAACTAA

hide sequence

RefSeq Acc Id:

XM_055113245 ⟹ XP_054969220

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	40,491,376 - 40,514,599 (-)	NCBI
NHGRI_mPanPan1	6	36,492,837 - 36,516,045 (-)	NCBI

RefSeq Acc Id:

XM_057302447 ⟹ XP_057158430

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	40,490,853 - 40,520,394 (-)	NCBI
NHGRI_mPanPan1	6	36,492,314 - 36,521,841 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003804604	(Get FASTA)	NCBI Sequence Viewer
	XP_054969220	(Get FASTA)	NCBI Sequence Viewer
	XP_057158430	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_003804604 ⟸ XM_003804556

- Peptide Label:

isoform X1

- Sequence:

show sequence

MATKTELSPTARESKNAQDVQVDETLIPRKVPSLCSARYGIALVLHFCNFTTIAQNVIMNITMV
AMVNSTSPQSQLNDSSEGLPVDSFGGLSKAPKSLPAKAPVYDWSPQIQGIIFGAVGYGGILTMA
PSGYLAGRVGTKRVVGISLFATSFLTLCIPPAADFGIVLLIVTRIVQGLSQSSILGGQFAIWEK
WGPPQERSRLCSIALSGMLLGCFTAILIGGFISETLGWPFVFYIFGGVGCVCCLLWFVVIYDDP
VSYPWISTSEKEYIISSLKQQVRSSKQPLPIKAMLRSLPIWSICLGCFSHQWLVSTMIVYIPTY
ISSVYHVNIRDNGLLSALPFIVAWVIGMVGGYLADFLLTKKFRLITVRKIATILGSLPSSALIV
SLPYLNSGYITATALLTLSCGLSTLCQSGIYINVLDIAPRYSSFLMGASRGFSSIAPVIVPTVS
GFLLSQDPEFGWRNVFFLLFAVNLLGLLFYLIFGEADVQEWAKERKLTRL

hide sequence

RefSeq Acc Id:	XP_054969220 ⟸ XM_055113245
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_057158430 ⟸ XM_057302447
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	SLC17A3	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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