Slc17a4 (solute carrier family 17, member 4)

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Gene: Slc17a4 (solute carrier family 17, member 4) Rattus norvegicus

Analyze

Symbol:

Slc17a4

Name:

solute carrier family 17, member 4

RGD ID:

1584758

Description:

Predicted to enable thyroid hormone transmembrane transporter activity and urate transmembrane transporter activity. Predicted to be involved in monoatomic anion transport and sodium-dependent phosphate transport. Predicted to be located in apical plasma membrane and brush border membrane. Orthologous to human SLC17A4 (solute carrier family 17 member 4); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC679784; probable small intestine urate exporter; similar to solute carrier family 17 (sodium phosphate), member 4; solute carrier family 17 (sodium phosphate), member 4

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC17A4 (solute carrier family 17 member 4)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Slc17a4 (solute carrier family 17 (sodium phosphate), member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc17a4 (solute carrier family 17 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100995311 (probable small intestine urate exporter)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC17A4 (solute carrier family 17 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101971067 (probable small intestine urate exporter)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC17A4 (solute carrier family 17 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC17A4 (solute carrier family 17 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc17a4 (solute carrier family 17 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLC17A2 (solute carrier family 17 member 2)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	SLC17A4 (solute carrier family 17 member 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc17a4 (solute carrier family 17 (sodium phosphate), member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch1073-513e17.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	DAL5	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	SOA1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	THI73	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Drosophila melanogaster (fruit fly):	CG2003	Alliance	DIOPT (Ensembl Compara\|OMA)
Saccharomyces cerevisiae (baker's yeast):	FEN2	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Drosophila melanogaster (fruit fly):	CG7881	Alliance	DIOPT (Ensembl Compara\|OMA)
Saccharomyces cerevisiae (baker's yeast):	YCT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Drosophila melanogaster (fruit fly):	CG9254	Alliance	DIOPT (Ensembl Compara\|OMA)
Drosophila melanogaster (fruit fly):	CG3649	Alliance	DIOPT (Ensembl Compara\|OMA)
Drosophila melanogaster (fruit fly):	MFS17	Alliance	DIOPT (Ensembl Compara\|OMA)
Saccharomyces cerevisiae (baker's yeast):	TNA1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	SEO1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	VHT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	41,201,546 - 41,218,752 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	41,207,552 - 41,218,752 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	41,275,056 - 41,286,255 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	42,879,102 - 42,890,301 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	41,163,247 - 41,174,447 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	43,452,316 - 43,472,192 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	43,458,553 - 43,470,378 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	45,314,640 - 45,325,707 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	48,325,974 - 48,336,206 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	40,839,060 - 40,850,260 (+)	NCBI		Celera
Cytogenetic Map	17	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

chromium(6+) (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

diquat (ISO)

endosulfan (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

flutamide (EXP)

fulvestrant (ISO)

glafenine (EXP)

GW 4064 (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

monoatomic anion transport (IBA)

sodium-dependent phosphate transport (ISO)

thyroid hormone transport (IEA)

transmembrane transport (IEA)

urate transport (IEA)

Cellular Component

apical plasma membrane (ISO)

brush border membrane (ISO)

Molecular Function

thyroid hormone transmembrane transporter activity (ISO)

transmembrane transporter activity (IBA)

urate transmembrane transporter activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Slc17a4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	41,201,546 - 41,218,752 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	41,207,552 - 41,218,752 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	41,275,056 - 41,286,255 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	42,879,102 - 42,890,301 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	41,163,247 - 41,174,447 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	43,452,316 - 43,472,192 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	43,458,553 - 43,470,378 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	45,314,640 - 45,325,707 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	48,325,974 - 48,336,206 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	40,839,060 - 40,850,260 (+)	NCBI		Celera
Cytogenetic Map	17	p11	NCBI

SLC17A4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	25,754,699 - 25,781,199 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	25,754,699 - 25,781,199 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	25,754,927 - 25,781,427 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	25,862,945 - 25,888,419 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	25,862,944 - 25,888,419	NCBI
Celera	6	26,982,141 - 27,008,607 (+)	NCBI		Celera
Cytogenetic Map	6	p22.2	ENTREZGENE
HuRef	6	25,697,911 - 25,724,324 (+)	NCBI		HuRef
CHM1_1	6	25,757,157 - 25,783,633 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	25,620,474 - 25,646,984 (+)	NCBI		T2T-CHM13v2.0

Slc17a4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	24,081,862 - 24,098,992 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	24,079,873 - 24,098,992 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	23,897,879 - 23,915,009 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	23,895,890 - 23,915,009 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	23,989,758 - 24,006,876 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	23,905,354 - 23,922,472 (-)	NCBI		MGSCv36	mm8
Celera	13	24,129,555 - 24,146,690 (-)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI
cM Map	13	9.98	NCBI

Slc17a4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955483	1,306,785 - 1,328,334 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955483	1,307,081 - 1,345,962 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100995311
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	6	81,768,844 - 81,816,514 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	63,429,948 - 63,433,808 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	26,246,502 - 26,271,658 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	26,246,502 - 26,271,658 (+)	Ensembl	panpan1.1		panPan2

SLC17A4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	23,725,326 - 23,735,259 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	23,725,325 - 23,734,248 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	23,627,872 - 23,637,825 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	23,841,001 - 23,850,948 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	23,841,000 - 23,849,937 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	23,650,686 - 23,660,622 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	23,701,539 - 23,711,469 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	25,139,280 - 25,149,226 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101971067
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	1,850,535 - 1,867,548 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936671	1,754,789 - 1,770,986 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936671	1,754,845 - 1,770,986 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC17A4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	20,491,902 - 20,520,656 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	20,490,288 - 20,545,704 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	21,791,889 - 21,821,386 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC17A4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	46,473,152 - 46,499,340 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	46,474,159 - 46,484,247 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	25,696,131 - 25,715,312 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc17a4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	1,259,175 - 1,281,231 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	1,256,221 - 1,281,235 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc17a4
49 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	15
Count of miRNA genes:	15
Interacting mature miRNAs:	15
Transcripts:	ENSRNOT00000059494
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
7394837	Memor18	Memory QTL 18			exploratory behavior trait (VT:0010471)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	17	18640182	63640182	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22454924	50909196	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	57246843	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27027949	56836890	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27027949	60463643	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	27389946	53481766	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	31368391	62109574	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
2313854	Bp343	Blood pressure QTL 343	3.9		life span trait (VT:0005372)	age at time of death (CMO:0001193)	17	31990784	50909196	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	35837085	69599340	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	0.00000071	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	17	17		17				15
Low		18	18		18			13	20	18	1
Below cutoff		11	2	8	2	2	2	45		17	3	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000059494 ⟹ ENSRNOP00000056253

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	41,209,760 - 41,218,752 (+)	Ensembl
Rnor_6.0 Ensembl	17	43,460,782 - 43,468,815 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088939 ⟹ ENSRNOP00000070406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	41,207,552 - 41,218,752 (+)	Ensembl
Rnor_6.0 Ensembl	17	43,458,553 - 43,470,378 (+)	Ensembl

RefSeq Acc Id:

NM_001271214 ⟹ NP_001258143

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	41,207,552 - 41,218,752 (+)	NCBI
Rnor_6.0	17	43,458,556 - 43,469,756 (+)	NCBI
Rnor_5.0	17	45,314,640 - 45,325,707 (+)	NCBI
Celera	17	40,839,060 - 40,850,260 (+)	NCBI

Sequence:

show sequence

TAGATGCTGGCCCTAAGGAGGAGAAAGTCAAAATGTCTACTGGAGCAGACCTCAAGGCGAGAGA
GGGAGGCATTCCCAATGACAGCAATTTAAACATGACCCAAGAACAATCCTTCAAGAAAGGCTGC
TGCTCACTGCGCCATGGTTTGGCTTTCATCTTGCATCTCTGTAATTTTTCTGTTTATACCCAAC
AAATGAACCTGAGCATCGCCATAACAGCTATGGTGAACACCACAGCAGCATCCAGCCATGCCAA
CGCTTCCATAGAAAGGCCTACCACTGACTCCCAAGATTTCTGGAATGAAACACTACAGGAATCT
AAGGCCCCTGTTTACGACTGGACACCTGAGATCCAGGGAATCCTCCTCAGCTCTCTCAACTATG
GATCGTTCTTAGCTCCAATCCCTACTGGCTATGTGGCTGGAGTGTTTGGAGCCAAGTATGTGGT
TGGTTTGGGCTTGTTAGTTTCTTCCGTCCTGACTCTCTTCATTCCACTGGCAGCTGAGGCTGGA
GTAGCCTTACTAATTGTCCTTCGGGTCATCCAAGGCATGTCTCAGGTTATGGTGTTAACAGGTC
AGTACTCAATGTGGGCCAAATGGGCTCCCCCACTGGAAAGGAGTCAGCTCATCACCATCGCTGC
ATCAGGGTCAATGCTTGGAACGTTCCTTGTTCTTATTGCTGGTGGTCTTCTTTGCCAGGCCCTA
GGATGGCCTTATATATTCTACATCTTTGGTGGAATTGGCTGTGCCTGTTGCCTGCTCTGGTTCC
CCCTCGTATATGATGACCCACAGAATCATCCCTTTATCAGCACTGGTGAGAAGAGATACATCAT
GTGTTCACTGGCTCAAGAGGATTGCTCGCTGGGCTGGTCTCTTCCCATTAAAGCCATGGTGAAA
TCTCTCCCACTTTGGGCCATTGTGGTTTCATATTTCTGTGAATACTGGCTATTATTCACGATAA
TGGCATATACACCCACATATATCAGCTCTGTACTTCAAGCAAATCTCCGAGATAGTGGAATCCT
GTCTGCCCTGCCATTCATGTTCGGCTGTGTCTGCATTATTCTTGGGGGTCTACTGGCAGATTTT
CTCCTCTCCAGGAACATCCTCCGGCTTGTAACCATCAGGAAGCTCTTCACTGCCCTAGGGGTCC
TTGTCTCATCCGGGATCCTTGTGCCCCTACCTTGGGTCAGCTCCAGCCTCAGCACTACAATGGC
CTTCTTGGTACTATCTTCTGTCTTTGCCAGCCTCTGTGATTCAGGAGCCCTCATTAACTTCTTG
GATATAGCTCCACGGTATGCTGGCTTTCTCAAAGGACTATTGCAAGTCTTTTCTTACTTAGCTG
GAGGCATAGCTCCTACTGTTGCTGGATTTTTCATCAGTCAGGATTCAGAGTTTGGCTGGAGAAA
TGTCTTCTTACTTGCAGCTGCTATTGATGTAGTCGGCCTGCTCTTCTACCTCATCTTCGGCAGA
GCAGAGGTACAGGACTGGGCTAAGGAACCAACATTCACCCATCTCTGAGCAAAGTTAGTAATTT
GTAAAAAAGGCCTGTTTTTGTGCCTACTGGACAACTAAAACCTTACAACTGGAAGAGGCTTCAT
TTCCAGGATCATTTAAGAGACCCCGACTATCCGATATTAAATGTATTTTTTTCCATACCTGGAG
GCTTCATAAAGGAAAGAAAAGTCTGGTTATTTATAACTGTGTGCTCCTGAAATCACAGGTGTGT
CTGAGGTTCTACAAATCCTTTATACTTTCCCCTGTTGCCATGGTAAAAGCATCAGGGATGGGAG
GACAGTTTGCCATGAAAGCTAAAGAGGAAGCCAGAAGTACAGGAGTAATGAGTTGGAACCGCAG
GAGAATGGTACTCTGTGAGCTGTCAGCGAAGAGAACTGACAGCCGGAAAACAGGATGTCTGTGA
GCCGAAATTCTGTGGCAAGGGACCACTCATGCCAAGTGAAGGGGTTAGAGCCACTGTAGCTCTT
GGTGTGTGTAGGACGTCTAACTGAAAACAGCCAGGATAAAGAGCAATGAAGAATTAATCTATCA
TGCAAAAAGGTATGGACGTTCTCCAACTGCTATAAGAAGGGTAGTAGAATGCAGCCATTGCAGA
CAGCTTTCTGTATGTGGATCTCGGCTTTGGAGCAAAACCACCTCTGCAATATGAACACCACCCA
GGCACTTTCCGGAGGCCACTCTTCCACCAACAGCTTCCTTCTTTCTGACCACTTTAACCTGGGT
GTCTCATCTGTATGTATCTGTATGTAGGTCCATGCAAATCCCTTATGTCTTAGTCTTAGTGAGT
AGAATGGCCTTGTGTGTCTCTGATCTCATGCACTGCTTTGCAGCATCAGTCTCATCATGGATGC
CCTTTGCCTGTTTCTCTGACTCTTATGATCTCAGTCACTGTCAGTGGGCTTCATTTGATGTAGA
ATGTCTCTTAAAAATGGATGTGAGACCCG

hide sequence

RefSeq Acc Id:

XM_008771658 ⟹ XP_008769880

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	41,201,546 - 41,218,748 (+)	NCBI
Rnor_6.0	17	43,452,316 - 43,472,192 (+)	NCBI

Sequence:

show sequence

TCCAACACATAAATAATCACATAAAAAATAAACTTTAAAAATGAGGCAGGCAAGATTTCAGGAC
ACACAGACAATCAGGGAAGATGTATGTGACTTCAGATGAACTTAAAGTATGAGGAAGATTGAAG
GAACTTGGTCATGTCATCAATTAAATAATAAAACAAAGTTAAAAATTAAATGGCTGAGCCAATA
AAATCCTCCATTTGGAAAGAAAAGGGCTAAAGGCCCTGAGTAATAATTTACTCCTAAGGGTTAG
ACAGCTGCAGAAAACTGAGAAACCGATAGGATTGCAGCCAGGACTCAGCTCTCTGCCTTCCTCA
GTAAGTAGATGCTGGCCCTAAGGAGGAGAAAGTCAAAATGTCTACTGGAGCAGACCTCAAGGCG
AGAGAGGGAGGCATTCCCAATGACAGCAATTTAAACATGACCCAAGAACAATCCTTCAAGAAAG
GCTGCTGCTCACTGCGCCATGGTTTGGCTTTCATCTTGCATCTCTGTAATTTTTCTGTTTATAC
CCAACAAATGAACCTGAGCATCGCCATAACAGCTATGGTGAACACCACAGCAGCATCCAGCCAT
GCCAACGCTTCCATAGAAAGGCCTACCACTGACTCCCAAGATTTCTGGAATGAAACACTACAGG
AATCTAAGGCCCCTGTTTACGACTGGACACCTGAGATCCAGGGAATCCTCCTCAGCTCTCTCAA
CTATGGATCGTTCTTAGCTCCAATCCCTACTGGCTATGTGGCTGGAGTGTTTGGAGCCAAGTAT
GTGGTTGGTTTGGGCTTGTTAGTTTCTTCCGTCCTGACTCTCTTCATTCCACTGGCAGCTGAGG
CTGGAGTAGCCTTACTAATTGTCCTTCGGGTCATCCAAGGCATGTCTCAGGTTATGGTGTTAAC
AGGTCAGTACTCAATGTGGGCCAAATGGGCTCCCCCACTGGAAAGGAGTCAGCTCATCACCATC
GCTGCATCAGGGTCAATGCTTGGAACGTTCCTTGTTCTTATTGCTGGTGGTCTTCTTTGCCAGG
CCCTAGGATGGCCTTATATATTCTACATCTTTGGTGGAATTGGCTGTGCCTGTTGCCTGCTCTG
GTTCCCCCTCGTATATGATGACCCACAGAATCATCCCTTTATCAGCACTGGTGAGAAGAGATAC
ATCATGTGTTCACTGGCTCAAGAGGATTGCTCGCTGGGCTGGTCTCTTCCCATTAAAGCCATGG
TGAAATCTCTCCCACTTTGGGCCATTGTGGTTTCATATTTCTGTGAATACTGGCTATTATTCAC
GATAATGGCATATACACCCACATATATCAGCTCTGTACTTCAAGCAAATCTCCGAGATAGTGGA
ATCCTGTCTGCCCTGCCATTCATGTTCGGCTGTGTCTGCATTATTCTTGGGGGTCTACTGGCAG
ATTTTCTCCTCTCCAGGAACATCCTCCGGCTTGTAACCATCAGGAAGCTCTTCACTGCCCTAGG
GGTCCTTGTCTCATCCGGGATCCTTGTGCCCCTACCTTGGGTCAGCTCCAGCCTCAGCACTACA
ATGGCCTTCTTGGTACTATCTTCTGTCTTTGCCAGCCTCTGTGATTCAGGAGCCCTCATTAACT
TCTTGGATATAGCTCCACGGTATGCTGGCTTTCTCAAAGGACTATTGCAAGTCTTTTCTTACTT
AGCTGGAGGCATAGCTCCTACTGTTGCTGGATTTTTCATCAGTCAGGATTCAGAGTTTGGCTGG
AGAAATGTCTTCTTACTTGCAGCTGCTATTGATGTAGTCGGCCTGCTCTTCTACCTCATCTTCG
GCAGAGCAGAGGTACAGGACTGGGCTAAGGAACCAACATTCACCCATCTCTGAGCAAAGTTAGT
AATTTGTAAAAAAGGCCTGTTTTTGTGCCTACTGGACAACTAAAACCTTACAACTGGAAGAGGC
TTCATTTCCAGGATCATTTAAGAGACCCCGACTATCCGATATTAAATGTATTTTTTTCCATACC
TGGAGGCTTCATAAAGGAAAGAAAAGTCTGGTTATTTATAACTGTGTGCTCCTGAAATCACAGG
TGTGTCTGAGGTTCTACAAATCCTTTATACTTTCCCCTGTTGCCATGGTAAAAGCATCAGGGAT
GGGAGGACAGTTTGCCATGAAAGCTAAAGAGGAAGCCAGAAGTACAGGAGTAATGAGTTGGAAC
CGCAGGAGAATGGTACTCTGTGAGCTGTCAGCGAAGAGAACTGACAGCCGGAAAACAGGATGTC
TGTGAGCCGAAATTCTGTGGCAAGGGACCACTCATGCCAAGTGAAGGGGTTAGAGCCACTGTAG
CTCTTGGTGTGTGTAGGACGTCTAACTGAAAACAGCCAGGATAAAGAGCAATGAAGAATTAATC
TATCATGCAAAAAGGTATGGACGTTCTCCAACTGCTATAAGAAGGGTAGTAGAATGCAGCCATT
GCAGACAGCTTTCTGTATGTGGATCTCGGCTTTGGAGCAAAACCACCTCTGCAATATGAACACC
ACCCAGGCACTTTCCGGAGGCCACTCTTCCACCAACAGCTTCCTTCTTTCTGACCACTTTAACC
TGGGTGTCTCATCTGTATGTATCTGTATGTAGGTCCATGCAAATCCCTTATGTCTTAGTCTTAG
TGAGTAGAATGGCCTTGTGTGTCTCTGATCTCATGCACTGCTTTGCAGCATCAGTCTCATCATG
GATGCCCTTTGCCTGTTTCTCTGACTCTTATGATCTCAGTCACTGTCAGTGGGCTTCATTTGAT
GTAGAATGTCTCTTAAAAATGGATGTGAGACCCGTGCTTGCTTCACTTCATTTCAAATGTCTCT
TTTCATTAAGAATCCCCACGGGTGACACAGGAACAACAAAAGAGAGCCCAAGTGCTCAAACACT
AAATGAATATTAATGAATATATTAGTCTGTATAGTGACATGGCAGACATCACAATTGTGAATAG
CTTGTAGCAGTTTGCTATCACAAGTCAAGAACACACGGCATTGTGGACCCAGTGAAGAAAGAGT
ATTGGTCTTTACATTGAAATCAGTGGAGGTATTTTAATGGAAAGGGACATAGTTGGGTTCTGAT
TGGGAGTGAGTGCTGGTGAGGAAAAGGCCTTCTCCGAGGATTTTAAGGAAACAGCTCTCTTAAA
CTGCATAAGAAAGTTGGGTAGGGGGTTCCAGTGCAATCCAGGGAATGGTGGAGGTGGGGAAATA
AGCAAGGGAATAGCCTGGCTACATTAATACTCTATGAGAGCATAGATAATGACTATAGCAACAG
TTACATTTTGGTTTGATTTGTTATTAGAACAATTGGGATGCTCGTCACAATGATAGTAATATAA
TCAATGAAGACCACAAATAGGAACATGGGCACAAGGTTTGGATGTGACATCTGGGGTCTAGCTA
TGAATTTGGAAATAATTTAAACATAGGTCATAATTGACATTTTCAATATGAATGAGAGTGCCTG
GGTAGACGGTAAACAGAGAAAGCCTGTGACTAATCCTTCAAGATTTCCAGTGTTTAATGGTCAG
ATAGAGGGTGTTTAGAGAAAAAGAGGGAAGGAGGTGTGGGAAAGGATAGAAGGAAAAGGGAGGG
AGGAAGAAAAGTATAGAAGTAAAACCAAGAGATTAGCATTAAGATGGAGACCCAGAAAAAATAA
ATTATGAAGAGTGAATAGTCAATATGGCACCAGTCTGCAGAGATCTGACTAATGGACAGGGAGA
AAGAAGAGTGAGAAGAAGGGAGTTCACTCCTGAGACTTTGGAGGCAAAAGAGTGGGTGGGAGAA
AGGTGAGAGGGTATGAGATTGGACACAGTGTGGGGCAAGCTTGTCTTCAACCACGAGGCAGAGC
TCGTTGAAAAATGAGTGGTAGAAGCGAAAGCACCAAGCATGAATGCAAAGTTCCTGGGAAAAGG
CTGAGGAAGGAATGGTGTGACCCAAAGCCTCCCTAGGAAGGTAAGGAGAATGGAATGAATGAGG
GAGGCCTTGCCAAGGTCGCATCCATATTTGCTAGTGAAAAGTCTATGATGGGTTTCATTCTCAG
TATCTTTTTTTTTTTTCTACTTGAAAGTACAGAGGTGGTTTGTGGGTAAGACAAAAGCTACACG
GTTCTTATTAGACAGAAAAATGACAGGAAAGACATGCCCTGCAGGTGGCCGGCCAAGGTTTTTG
CCTCCCTACAACCCCTGGAACACCCATATTCTTCCTCTTCTGGCCCATTACCCAGCCTGAATAT
AAACCCAGAAAGTTTCAGAAGCCAGGGCATGCATTATTTGAGATATCCTTAGCAAAGTGTGAGA
TTCTGTTTACAGTAAATACTGATAAACGTTTGATGAGTCTTTTATTGGAGAAGTTCTGGGGTGG
TATAGAAGACCAGCTAGGGAGACAAAGGGAATGGGAAAGAGTCCTAGTTTCTTCCCTGTTCCTG
TGACAAATACCATGACCAAGCAAGCTTACACTTCTAGGTTATAGCCCATCATTGAGGGGAGTCA
GGGCAGAAACTCAAGCAGGGATATGAAGCAGAATCCACAGAGAAATGCCTCTTGCTAGTTTGGT
TGAAGGCTCATGCTTGCTGACTAGTTTACAGTCTCAAATTTTGATAGCTTTCTTATATAGCTCA
GGACTATCTGCTTCTGGGTGGTGCTGACCACAATGGGCTGGACTCTCTTGCACCAGTTAAAAAT
CAATCAATGCCCCATGGACATGTCATAGGCCAATCTAATTTGATCAATACTTAAATTGGGACTC
CCTTTGCAGGTGGCTCTAGGCTGTGTCAAGTTCACAGTTAAAGCTAATAAGGACAAGAGAAAGC
GGAACCAATTTTGTGGAAACCCTGGTAATTAAGATTCCAGTCTACCATGTTCCAATAACTTCTT
TGAGCTACATGCAAAATGGAATACTCTCTTTATCAGCAGGGCTTCTTTTCTCTGGCCTTGTCTG
GTGAGCCCAACCCCCCCCCCCCATACCCTCTCCCTGGGGATGGTCAAATAGTCCTTGGCAGACC
TAGAAGTTCAACTTCTCTTTCTTGGATAAGAAGGCACCCAGCAAGCACCTAGGATTCTCCATGC
CTCTCCATGCAAATGAGGGAGTCCCAGTACTTTAAATTCTAACCAATGATTTTACAATCCCTGA
AAACTCCTTTCCACTCTCCAAGTTTCATATCTAGCTCGGTCCACCCTGAATAAAGTACATGCAT
ATAAGCCCAACCTGAATAAAGATATGTGCACAAAGATA

hide sequence

RefSeq Acc Id:

XM_008771659 ⟹ XP_008769881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	41,201,570 - 41,218,748 (+)	NCBI
Rnor_6.0	17	43,452,316 - 43,472,192 (+)	NCBI

Sequence:

show sequence

TCCAACACATAAATAATCACATAAAAAATAAACTTTAAAAATGAGGCAGGCAAGATTTCAGGAC
ACACAGACAATCAGGGAAGATGTATGTGACTTCAGATGAACTTAAAGTATGAGGAAGATTGAAG
GAACTTGGTCATGTCATCAATTAAATAATAAAACAAAGTTAAAAATTAAATGGCTGAGCCAATA
AAATCCTCCATTTGGAAAGAAAAGGGCTAAAGGCCCTGAGTAATAATTTACTCCTAAGGGTTAG
ACAGCTGCAGAAAACTGAGAAACCGATAGGATTGCAGCCAGGACTCAGCTCTCTGCCTTCCTCA
GGTTTGCTTTCAAGTTCTTGCTGTGGTTTGATGGTGTGGGAACGGACCTTTTCCTGTTGAGATT
ATAGATGTAAGTAGATGCTGGCCCTAAGGAGGAGAAAGTCAAAATGTCTACTGGAGCAGACCTC
AAGGCGAGAGAGGGAGGCATTCCCAATGACAGCAATTTAAACATGACCCAAGAACAATCCTTCA
AGAAAGGCTGCTGCTCACTGCGCCATGGTTTGGCTTTCATCTTGCATCTCTGTAATTTTTCTGT
TTATACCCAACAAATGAACCTGAGCATCGCCATAACAGCTATGGTGAACACCACAGCAGCATCC
AGCCATGCCAACGCTTCCATAGAAAGGCCTACCACTGACTCCCAAGATTTCTGGAATGAAACAC
TACAGGAATCTAAGGCCCCTGTTTACGACTGGACACCTGAGATCCAGGGAATCCTCCTCAGCTC
TCTCAACTATGGATCGTTCTTAGCTCCAATCCCTACTGGCTATGTGGCTGGAGTGTTTGGAGCC
AAGTATGTGGTTGGTTTGGGCTTGTTAGTTTCTTCCGTCCTGACTCTCTTCATTCCACTGGCAG
CTGAGGCTGGAGTAGCCTTACTAATTGTCCTTCGGGTCATCCAAGGCATGTCTCAGGTTATGGT
GTTAACAGGTCAGTACTCAATGTGGGCCAAATGGGCTCCCCCACTGGAAAGGAGTCAGCTCATC
ACCATCGCTGCATCAGGGTCAATGCTTGGAACGTTCCTTGTTCTTATTGCTGGTGGTCTTCTTT
GCCAGGCCCTAGGATGGCCTTATATATTCTACATCTTTGGTGGAATTGGCTGTGCCTGTTGCCT
GCTCTGGTTCCCCCTCGTATATGATGACCCACAGAATCATCCCTTTATCAGCACTGGTGAGAAG
AGATACATCATGTGTTCACTGGCTCAAGAGGATTGCTCGCTGGGCTGGTCTCTTCCCATTAAAG
CCATGGTGAAATCTCTCCCACTTTGGGCCATTGTGGTTTCATATTTCTGTGAATACTGGCTATT
ATTCACGATAATGGCATATACACCCACATATATCAGCTCTGTACTTCAAGCAAATCTCCGAGAT
AGTGGAATCCTGTCTGCCCTGCCATTCATGTTCGGCTGTGTCTGCATTATTCTTGGGGGTCTAC
TGGCAGATTTTCTCCTCTCCAGGAACATCCTCCGGCTTGTAACCATCAGGAAGCTCTTCACTGC
CCTAGGGGTCCTTGTCTCATCCGGGATCCTTGTGCCCCTACCTTGGGTCAGCTCCAGCCTCAGC
ACTACAATGGCCTTCTTGGTACTATCTTCTGTCTTTGCCAGCCTCTGTGATTCAGGAGCCCTCA
TTAACTTCTTGGATATAGCTCCACGGTATGCTGGCTTTCTCAAAGGACTATTGCAAGTCTTTTC
TTACTTAGCTGGAGGCATAGCTCCTACTGTTGCTGGATTTTTCATCAGTCAGGATTCAGAGTTT
GGCTGGAGAAATGTCTTCTTACTTGCAGCTGCTATTGATGTAGTCGGCCTGCTCTTCTACCTCA
TCTTCGGCAGAGCAGAGGTACAGGACTGGGCTAAGGAACCAACATTCACCCATCTCTGAGCAAA
GTTAGTAATTTGTAAAAAAGGCCTGTTTTTGTGCCTACTGGACAACTAAAACCTTACAACTGGA
AGAGGCTTCATTTCCAGGATCATTTAAGAGACCCCGACTATCCGATATTAAATGTATTTTTTTC
CATACCTGGAGGCTTCATAAAGGAAAGAAAAGTCTGGTTATTTATAACTGTGTGCTCCTGAAAT
CACAGGTGTGTCTGAGGTTCTACAAATCCTTTATACTTTCCCCTGTTGCCATGGTAAAAGCATC
AGGGATGGGAGGACAGTTTGCCATGAAAGCTAAAGAGGAAGCCAGAAGTACAGGAGTAATGAGT
TGGAACCGCAGGAGAATGGTACTCTGTGAGCTGTCAGCGAAGAGAACTGACAGCCGGAAAACAG
GATGTCTGTGAGCCGAAATTCTGTGGCAAGGGACCACTCATGCCAAGTGAAGGGGTTAGAGCCA
CTGTAGCTCTTGGTGTGTGTAGGACGTCTAACTGAAAACAGCCAGGATAAAGAGCAATGAAGAA
TTAATCTATCATGCAAAAAGGTATGGACGTTCTCCAACTGCTATAAGAAGGGTAGTAGAATGCA
GCCATTGCAGACAGCTTTCTGTATGTGGATCTCGGCTTTGGAGCAAAACCACCTCTGCAATATG
AACACCACCCAGGCACTTTCCGGAGGCCACTCTTCCACCAACAGCTTCCTTCTTTCTGACCACT
TTAACCTGGGTGTCTCATCTGTATGTATCTGTATGTAGGTCCATGCAAATCCCTTATGTCTTAG
TCTTAGTGAGTAGAATGGCCTTGTGTGTCTCTGATCTCATGCACTGCTTTGCAGCATCAGTCTC
ATCATGGATGCCCTTTGCCTGTTTCTCTGACTCTTATGATCTCAGTCACTGTCAGTGGGCTTCA
TTTGATGTAGAATGTCTCTTAAAAATGGATGTGAGACCCGTGCTTGCTTCACTTCATTTCAAAT
GTCTCTTTTCATTAAGAATCCCCACGGGTGACACAGGAACAACAAAAGAGAGCCCAAGTGCTCA
AACACTAAATGAATATTAATGAATATATTAGTCTGTATAGTGACATGGCAGACATCACAATTGT
GAATAGCTTGTAGCAGTTTGCTATCACAAGTCAAGAACACACGGCATTGTGGACCCAGTGAAGA
AAGAGTATTGGTCTTTACATTGAAATCAGTGGAGGTATTTTAATGGAAAGGGACATAGTTGGGT
TCTGATTGGGAGTGAGTGCTGGTGAGGAAAAGGCCTTCTCCGAGGATTTTAAGGAAACAGCTCT
CTTAAACTGCATAAGAAAGTTGGGTAGGGGGTTCCAGTGCAATCCAGGGAATGGTGGAGGTGGG
GAAATAAGCAAGGGAATAGCCTGGCTACATTAATACTCTATGAGAGCATAGATAATGACTATAG
CAACAGTTACATTTTGGTTTGATTTGTTATTAGAACAATTGGGATGCTCGTCACAATGATAGTA
ATATAATCAATGAAGACCACAAATAGGAACATGGGCACAAGGTTTGGATGTGACATCTGGGGTC
TAGCTATGAATTTGGAAATAATTTAAACATAGGTCATAATTGACATTTTCAATATGAATGAGAG
TGCCTGGGTAGACGGTAAACAGAGAAAGCCTGTGACTAATCCTTCAAGATTTCCAGTGTTTAAT
GGTCAGATAGAGGGTGTTTAGAGAAAAAGAGGGAAGGAGGTGTGGGAAAGGATAGAAGGAAAAG
GGAGGGAGGAAGAAAAGTATAGAAGTAAAACCAAGAGATTAGCATTAAGATGGAGACCCAGAAA
AAATAAATTATGAAGAGTGAATAGTCAATATGGCACCAGTCTGCAGAGATCTGACTAATGGACA
GGGAGAAAGAAGAGTGAGAAGAAGGGAGTTCACTCCTGAGACTTTGGAGGCAAAAGAGTGGGTG
GGAGAAAGGTGAGAGGGTATGAGATTGGACACAGTGTGGGGCAAGCTTGTCTTCAACCACGAGG
CAGAGCTCGTTGAAAAATGAGTGGTAGAAGCGAAAGCACCAAGCATGAATGCAAAGTTCCTGGG
AAAAGGCTGAGGAAGGAATGGTGTGACCCAAAGCCTCCCTAGGAAGGTAAGGAGAATGGAATGA
ATGAGGGAGGCCTTGCCAAGGTCGCATCCATATTTGCTAGTGAAAAGTCTATGATGGGTTTCAT
TCTCAGTATCTTTTTTTTTTTTCTACTTGAAAGTACAGAGGTGGTTTGTGGGTAAGACAAAAGC
TACACGGTTCTTATTAGACAGAAAAATGACAGGAAAGACATGCCCTGCAGGTGGCCGGCCAAGG
TTTTTGCCTCCCTACAACCCCTGGAACACCCATATTCTTCCTCTTCTGGCCCATTACCCAGCCT
GAATATAAACCCAGAAAGTTTCAGAAGCCAGGGCATGCATTATTTGAGATATCCTTAGCAAAGT
GTGAGATTCTGTTTACAGTAAATACTGATAAACGTTTGATGAGTCTTTTATTGGAGAAGTTCTG
GGGTGGTATAGAAGACCAGCTAGGGAGACAAAGGGAATGGGAAAGAGTCCTAGTTTCTTCCCTG
TTCCTGTGACAAATACCATGACCAAGCAAGCTTACACTTCTAGGTTATAGCCCATCATTGAGGG
GAGTCAGGGCAGAAACTCAAGCAGGGATATGAAGCAGAATCCACAGAGAAATGCCTCTTGCTAG
TTTGGTTGAAGGCTCATGCTTGCTGACTAGTTTACAGTCTCAAATTTTGATAGCTTTCTTATAT
AGCTCAGGACTATCTGCTTCTGGGTGGTGCTGACCACAATGGGCTGGACTCTCTTGCACCAGTT
AAAAATCAATCAATGCCCCATGGACATGTCATAGGCCAATCTAATTTGATCAATACTTAAATTG
GGACTCCCTTTGCAGGTGGCTCTAGGCTGTGTCAAGTTCACAGTTAAAGCTAATAAGGACAAGA
GAAAGCGGAACCAATTTTGTGGAAACCCTGGTAATTAAGATTCCAGTCTACCATGTTCCAATAA
CTTCTTTGAGCTACATGCAAAATGGAATACTCTCTTTATCAGCAGGGCTTCTTTTCTCTGGCCT
TGTCTGGTGAGCCCAACCCCCCCCCCCCATACCCTCTCCCTGGGGATGGTCAAATAGTCCTTGG
CAGACCTAGAAGTTCAACTTCTCTTTCTTGGATAAGAAGGCACCCAGCAAGCACCTAGGATTCT
CCATGCCTCTCCATGCAAATGAGGGAGTCCCAGTACTTTAAATTCTAACCAATGATTTTACAAT
CCCTGAAAACTCCTTTCCACTCTCCAAGTTTCATATCTAGCTCGGTCCACCCTGAATAAAGTAC
ATGCATATAAGCCCAACCTGAATAAAGATATGTGCACAAAGATA

hide sequence

RefSeq Acc Id:

XM_039096054 ⟹ XP_038951982

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	41,201,571 - 41,218,748 (+)	NCBI

RefSeq Acc Id:

XM_039096055 ⟹ XP_038951983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	41,201,546 - 41,218,748 (+)	NCBI

RefSeq Acc Id:

XM_039096056 ⟹ XP_038951984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	41,209,842 - 41,218,748 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258143	(Get FASTA)	NCBI Sequence Viewer
	XP_008769880	(Get FASTA)	NCBI Sequence Viewer
	XP_008769881	(Get FASTA)	NCBI Sequence Viewer
	XP_038951982	(Get FASTA)	NCBI Sequence Viewer
	XP_038951983	(Get FASTA)	NCBI Sequence Viewer
	XP_038951984	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056253.5
	ENSRNOP00000070406
	ENSRNOP00000070406.1

RefSeq Acc Id:

NP_001258143 ⟸ NM_001271214

- UniProtKB:

A0A0G2JXU5 (UniProtKB/TrEMBL), A6KLJ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTGADLKAREGGIPNDSNLNMTQEQSFKKGCCSLRHGLAFILHLCNFSVYTQQMNLSIAITAM
VNTTAASSHANASIERPTTDSQDFWNETLQESKAPVYDWTPEIQGILLSSLNYGSFLAPIPTGY
VAGVFGAKYVVGLGLLVSSVLTLFIPLAAEAGVALLIVLRVIQGMSQVMVLTGQYSMWAKWAPP
LERSQLITIAASGSMLGTFLVLIAGGLLCQALGWPYIFYIFGGIGCACCLLWFPLVYDDPQNHP
FISTGEKRYIMCSLAQEDCSLGWSLPIKAMVKSLPLWAIVVSYFCEYWLLFTIMAYTPTYISSV
LQANLRDSGILSALPFMFGCVCIILGGLLADFLLSRNILRLVTIRKLFTALGVLVSSGILVPLP
WVSSSLSTTMAFLVLSSVFASLCDSGALINFLDIAPRYAGFLKGLLQVFSYLAGGIAPTVAGFF
ISQDSEFGWRNVFLLAAAIDVVGLLFYLIFGRAEVQDWAKEPTFTHL

hide sequence

RefSeq Acc Id:	XP_008769881 ⟸ XM_008771659
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXU5 (UniProtKB/TrEMBL), A6KLJ0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTGADLKAREGGIPNDSNLNMTQEQSFKKGCCSLRHGLAFILHLCNFSVYTQQMNLSIAITAM VNTTAASSHANASIERPTTDSQDFWNETLQESKAPVYDWTPEIQGILLSSLNYGSFLAPIPTGY VAGVFGAKYVVGLGLLVSSVLTLFIPLAAEAGVALLIVLRVIQGMSQVMVLTGQYSMWAKWAPP LERSQLITIAASGSMLGTFLVLIAGGLLCQALGWPYIFYIFGGIGCACCLLWFPLVYDDPQNHP FISTGEKRYIMCSLAQEDCSLGWSLPIKAMVKSLPLWAIVVSYFCEYWLLFTIMAYTPTYISSV LQANLRDSGILSALPFMFGCVCIILGGLLADFLLSRNILRLVTIRKLFTALGVLVSSGILVPLP WVSSSLSTTMAFLVLSSVFASLCDSGALINFLDIAPRYAGFLKGLLQVFSYLAGGIAPTVAGFF ISQDSEFGWRNVFLLAAAIDVVGLLFYLIFGRAEVQDWAKEPTFTHL hide sequence

RefSeq Acc Id:	XP_008769880 ⟸ XM_008771658
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXU5 (UniProtKB/TrEMBL), A6KLJ0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTGADLKAREGGIPNDSNLNMTQEQSFKKGCCSLRHGLAFILHLCNFSVYTQQMNLSIAITAM VNTTAASSHANASIERPTTDSQDFWNETLQESKAPVYDWTPEIQGILLSSLNYGSFLAPIPTGY VAGVFGAKYVVGLGLLVSSVLTLFIPLAAEAGVALLIVLRVIQGMSQVMVLTGQYSMWAKWAPP LERSQLITIAASGSMLGTFLVLIAGGLLCQALGWPYIFYIFGGIGCACCLLWFPLVYDDPQNHP FISTGEKRYIMCSLAQEDCSLGWSLPIKAMVKSLPLWAIVVSYFCEYWLLFTIMAYTPTYISSV LQANLRDSGILSALPFMFGCVCIILGGLLADFLLSRNILRLVTIRKLFTALGVLVSSGILVPLP WVSSSLSTTMAFLVLSSVFASLCDSGALINFLDIAPRYAGFLKGLLQVFSYLAGGIAPTVAGFF ISQDSEFGWRNVFLLAAAIDVVGLLFYLIFGRAEVQDWAKEPTFTHL hide sequence

RefSeq Acc Id:

ENSRNOP00000056253 ⟸ ENSRNOT00000059494

RefSeq Acc Id:

ENSRNOP00000070406 ⟸ ENSRNOT00000088939

RefSeq Acc Id:	XP_038951983 ⟸ XM_039096055
- Peptide Label:	isoform X2
- UniProtKB:	D3ZX83 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951982 ⟸ XM_039096054
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXU5 (UniProtKB/TrEMBL), A6KLJ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951984 ⟸ XM_039096056
- Peptide Label:	isoform X3

Protein Domains

Major facilitator superfamily (MFS) profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JXU5-F1-model_v2	AlphaFold	A0A0G2JXU5	1-495	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1584758	AgrOrtholog
BioCyc Gene	G2FUF-9392	BioCyc
Ensembl Genes	ENSRNOG00000022505	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059494.5	UniProtKB/TrEMBL
	ENSRNOT00000088939	ENTREZGENE
	ENSRNOT00000088939.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.20	UniProtKB/TrEMBL
InterPro	MFS	UniProtKB/TrEMBL
	MFS_dom	UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/TrEMBL
KEGG Report	rno:679784	UniProtKB/TrEMBL
NCBI Gene	679784	ENTREZGENE
PANTHER	SMALL INTESTINE URATE EXPORTER-RELATED	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 17	UniProtKB/TrEMBL
Pfam	MFS_1	UniProtKB/TrEMBL
PhenoGen	Slc17a4	PhenoGen
PROSITE	MFS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000022505	RatGTEx
Superfamily-SCOP	SSF103473	UniProtKB/TrEMBL
UniProt	A0A0G2JXU5	ENTREZGENE, UniProtKB/TrEMBL
	A6KLJ0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZX83	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-02	Slc17a4	solute carrier family 17, member 4	Slc17a4	solute carrier family 17 (sodium phosphate), member 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Slc17a4	solute carrier family 17 (sodium phosphate), member 4	LOC679784	similar to solute carrier family 17 (sodium phosphate), member 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC679784	similar to solute carrier family 17 (sodium phosphate), member 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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