Hspa8-ps22 (heat shock protein family A (Hsp70) member 8, pseudogene 22) - Rat Genome Database

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Gene: Hspa8-ps22 (heat shock protein family A (Hsp70) member 8, pseudogene 22) Rattus norvegicus
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Symbol: Hspa8-ps22
Name: heat shock protein family A (Hsp70) member 8, pseudogene 22
RGD ID: 1586445
Description:
Type: pseudo (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: LOC688655; similar to heat shock protein 8
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81760,828,283 - 60,830,319 (-)NCBIGRCr8
mRatBN7.21756,133,298 - 56,135,340 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl634,624,118 - 34,626,057 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01760,734,426 - 60,736,529 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl634,553,367 - 34,555,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01762,513,012 - 62,515,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41764,746,204 - 64,748,142 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Hspa8-ps22
16 total Variants

1 to 10 of 51 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat

1 to 10 of 51 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 8 43 111 77 75 50 20 50 6 193 84 93 45 52 25


RefSeq Transcripts XR_001841948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000007637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl634,624,118 - 34,626,057 (-)Ensembl
Rnor_6.0 Ensembl634,553,367 - 34,555,306 (-)Ensembl
RefSeq Acc Id: XR_001841948
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01760,734,426 - 60,736,529 (+)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-8959 BioCyc
Ensembl Genes ENSRNOG00000005811 Ensembl
NCBI Gene 688655 ENTREZGENE
PhenoGen Hspa8-ps22 PhenoGen
RatGTEx ENSRNOG00000005811 RatGTEx


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Hspa8-ps22  heat shock protein family A (Hsp70) member 8, pseudogene 22  LOC688655  similar to heat shock protein 8  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC688655  similar to heat shock protein 8      Symbol and Name status set to provisional 70820 PROVISIONAL