Gene: LOC100911664 (uncharacterized LOC100911664) Rattus norvegicus
Analyze
Symbol:
LOC100911664
Name:
uncharacterized LOC100911664
Description:
Orthologous to human C6orf62 (chromosome 6 open reading frame 62); INTERACTS WITH bisphenol A; 2-hydroxypropanoic acid (ortholog); 5-azacytidine (ortholog).
Type:
protein-coding
RefSeq Status:
VALIDATED
Also known as:
uncharacterized protein C6orf62 homolog; uncharacterized protein LOC100911664
Orthologs:
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
C6orf62 (chromosome 6 open reading frame 62) HGNC
EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
BC005537 (cDNA sequence BC005537) HGNC
Treefam, EggNOG, OrthoMCL, NCBI, OMA, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):
LOC102009721 (chromosome unknown open reading frame, human C6orf62) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
C6H6orf62 (chromosome 6 C6orf62 homolog) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
C35H6orf62 (chromosome 35 C6orf62 homolog) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
CUNH6orf62 (chromosome unknown C6orf62 homolog) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
C7H6orf62 (chromosome 7 C6orf62 homolog) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
C6orf62 (chromosome 6 open reading frame 62)
Alliance
DIOPT (Ensembl Compara, HGNC, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PhylomeDB, TreeFam)
Mus musculus (house mouse):
BC005537 (cDNA sequence BC005537)
Alliance
DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PhylomeDB, TreeFam)
Danio rerio (zebrafish):
zgc:111986
Alliance
DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PhylomeDB, TreeFam)
Latest Assembly:
Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Rnor_6.0 17 42,256,971 - 42,268,607 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 42,257,019 - 42,276,797 (-) Ensembl Rnor_5.0 17 44,124,742 - 44,136,371 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Celera 17 39,893,497 - 39,905,141 (-) NCBI Celera Cytogenetic Map 17 p11 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Gene-Chemical Interaction Annotations
References - curated
References - uncurated
Genomics
Comparative Map Data
LOC100911664 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Rnor_6.0 17 42,256,971 - 42,268,607 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 42,257,019 - 42,276,797 (-) Ensembl Rnor_5.0 17 44,124,742 - 44,136,371 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Celera 17 39,893,497 - 39,905,141 (-) NCBI Celera Cytogenetic Map 17 p11 NCBI
C6orf62 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 24,704,299 - 24,720,920 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh37 6 24,705,089 - 24,721,064 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 6 24,813,137 - 24,827,382 (-) NCBI NCBI36 hg18 NCBI36 Build 34 6 24,813,144 - 24,827,382 NCBI Celera 6 25,938,465 - 25,952,778 (-) NCBI Cytogenetic Map 6 p22.3 NCBI HuRef 6 24,654,519 - 24,668,831 (-) NCBI HuRef CHM1_1 6 24,709,233 - 24,723,547 (-) NCBI CHM1_1
BC005537 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm38 13 24,801,657 - 24,812,899 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 MGSCv37 13 24,893,526 - 24,904,768 (+) NCBI GRCm37 mm9 NCBIm37 MGSCv36 13 24,809,122 - 24,820,364 (+) NCBI mm8 Celera 13 25,032,322 - 25,043,564 (+) NCBI Celera Cytogenetic Map 13 A3.1 NCBI
LOC102009721 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 NW_004955483 2,346,246 - 2,358,156 (+) NCBI ChiLan1.0 ChiLan1.0
C6H6orf62 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl PanPan1.1 6 24,874,941 - 24,891,081 (-) NCBI panpan1.1 PanPan1.1 Bonobo Cytomap 6 NCBI
C35H6orf62
CUNH6orf62
C7H6orf62
Position Markers
RH127745
Rat Assembly Chr Position (strand) Source JBrowse Rnor_6.0 17 42,257,017 - 42,257,221 NCBI Rnor6.0 Rnor_5.0 17 44,124,816 - 44,125,020 UniSTS Rnor5.0 RGSC_v3.4 17 47,317,843 - 47,318,047 UniSTS RGSC3.4 Celera 17 39,893,543 - 39,893,747 UniSTS Cytogenetic Map 17 p11 UniSTS
RH140503
Rat Assembly Chr Position (strand) Source JBrowse Rnor_6.0 17 42,260,263 - 42,260,509 NCBI Rnor6.0 Rnor_5.0 17 44,128,062 - 44,128,308 UniSTS Rnor5.0 RGSC_v3.4 17 47,321,090 - 47,321,336 UniSTS RGSC3.4 Celera 17 39,896,790 - 39,897,036 UniSTS Cytogenetic Map 17 p11 UniSTS
RH118352
Rat Assembly Chr Position (strand) Source JBrowse Rnor_6.0 17 42,260,174 - 42,260,343 NCBI Rnor6.0 Rnor_5.0 17 44,127,973 - 44,128,142 UniSTS Rnor5.0 RGSC_v3.4 17 47,321,001 - 47,321,170 UniSTS RGSC3.4 Celera 17 39,896,701 - 39,896,870 UniSTS Cytogenetic Map 17 p11 UniSTS
QTLs in Region (Rnor_6.0)
1354658 Spl8 Serum phospholipid level QTL 8 3.8 blood VLDL phospholipid amount (VT:0010507) blood very low density lipoprotein phospholipid level (CMO:0001571) 17 1 63676140 Rat 1354662 Rf49 Renal function QTL 49 2.9 blood creatinine amount (VT:0005328) plasma creatinine level (CMO:0000537) 17 1 73413148 Rat 1354581 Bp247 Blood pressure QTL 247 4.5 arterial blood pressure trait (VT:2000000) pulse pressure (CMO:0000292) 17 1 73413148 Rat 1354596 Bw32 Body weight QTL 32 4.5 body mass (VT:0001259) body weight (CMO:0000012) 17 3336972 63676140 Rat 1354638 Insul1 Insulin level QTL 1 4.8 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 17 3336972 73413148 Rat 1354651 Lmblg2 Limb length QTL 2 6 tibia length (VT:0004357) tibia length (CMO:0000450) 17 3336972 73413148 Rat 1354630 Cm34 Cardiac mass QTL 34 8.7 heart left ventricle mass (VT:0007031) heart left ventricle wet weight (CMO:0000071) 17 3336972 73413148 Rat 2303627 Vencon8 Ventilatory control QTL 8 0.001 respiration trait (VT:0001943) tidal volume (CMO:0000222) 17 5191047 50191047 Rat 10054088 Scort28 Serum corticosterone level QTL 28 2.04 0.0102 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 17 5191047 50191047 Rat 2303561 Bw91 Body weight QTL 91 2 body mass (VT:0001259) body weight (CMO:0000012) 17 9827304 54827304 Rat 2300002 Iddm36 Insulin dependent diabetes mellitus QTL 36 1.98 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 17 10529709 42542027 Rat 1331765 Hrtrt15 Heart rate QTL 15 4.094 heart pumping trait (VT:2000009) heart rate (CMO:0000002) 17 15743755 61036897 Rat 1354640 Scl32 Serum cholesterol level QTL 32 5.4 blood HDL cholesterol amount (VT:0000184) blood high density lipoprotein cholesterol level (CMO:0000052) 17 18676140 63676140 Rat 1354659 Scl68 Serum cholesterol level QTL 68 3.9 blood VLDL cholesterol amount (VT:0005144) blood very low density lipoprotein cholesterol level (CMO:0000648) 17 18676140 63676140 Rat 7488966 Bp370 Blood pressure QTL 370 0.001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 21490950 62195822 Rat 1559055 Bp278 Blood pressure QTL 278 0.04 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 21490950 66490950 Rat 12903978 Cm118 Cardiac mass QTL 118 0.001 heart mass (VT:0007028) heart wet weight to body weight ratio (CMO:0002408) 17 21490950 66490950 Rat 12903979 Cm119 Cardiac mass QTL 119 0.001 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 17 21490950 66490950 Rat 12903980 Cm120 Cardiac mass QTL 120 0.002 heart right ventricle mass (VT:0007033) heart right ventricle weight to body weight ratio (CMO:0000914) 17 21490950 66490950 Rat 12903981 Am17 Aortic mass QTL 17 0.001 aorta mass (VT:0002845) aorta weight to aorta length to body weight ratio (CMO:0002722) 17 21490950 66490950 Rat 12903982 Kidm70 Kidney mass QTL 70 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 17 21490950 74823273 Rat 70157 Niddm32 Non-insulin dependent diabetes mellitus QTL 32 4.34 blood glucose amount (VT:0000188) blood glucose level area under curve (AUC) (CMO:0000350) 17 22136814 53475276 Rat 61394 Bp8 Blood pressure QTL 8 2.2 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 17 22775065 64946194 Rat 1354628 Stl13 Serum triglyceride level QTL 13 3.8 blood triglyceride amount (VT:0002644) blood triglyceride level (CMO:0000118) 17 24030618 63676140 Rat 1581512 Cm55 Cardiac mass QTL 55 2.8 0.05 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 17 27690959 61794615 Rat 4889955 Bss93 Bone structure and strength QTL 93 4.4 tibia size trait (VT:0100001) tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727) 17 27690959 63994435 Rat 2302377 Scl61 Serum cholesterol level QTL 61 4.36 blood HDL cholesterol amount (VT:0000184) serum high density lipoprotein cholesterol level (CMO:0000361) 17 28073589 56207236 Rat 1354619 Bp242 Blood pressure QTL 242 6.3 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 17 28413148 73413148 Rat 9590107 Sffal7 Serum free fatty acids level QTL 7 4.81 0.001 blood free fatty acid amount (VT:0001553) plasma free fatty acids level (CMO:0000546) 17 30975228 75975228 Rat 8552928 Pigfal9 Plasma insulin-like growth factor 1 level QTL 9 9 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 17 30975228 75975228 Rat 10450503 Bp386 Blood pressure QTL 386 0.28 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 32055882 58468016 Rat 2324621 Coatc5 Coat color QTL 5 coat/hair pigmentation trait (VT:0010463) pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) 17 32055882 77922655 Rat 2313854 Bp343 Blood pressure QTL 343 3.9 life span trait (VT:0005372) age at time of death (CMO:0001193) 17 33303627 53475276 Rat 724549 Niddm56 Non-insulin dependent diabetes mellitus QTL 56 0.03 blood glucose amount (VT:0000188) blood glucose level area under curve (AUC) (CMO:0000350) 17 33303627 78303627 Rat 1354663 Bvd5 Brain ventricular dilatation QTL 5 3.51 0.001 brain ventricle morphology trait (VT:0000822) hydrocephalus severity score (CMO:0001881) 17 33303627 85321557 Rat 1300148 Bp192 Blood pressure QTL 192 3.47 arterial blood pressure trait (VT:2000000) blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) 17 36283245 77922655 Rat 724528 Uae4 Urinary albumin excretion QTL 4 4.9 0.0001 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 17 37790306 73413148 Rat 2317054 Aia12 Adjuvant induced arthritis QTL 12 4.24 joint integrity trait (VT:0010548) left rear ankle joint diameter (CMO:0002149) 17 41176057 86176057 Rat 2317060 Aia26 Adjuvant induced arthritis QTL 26 3.22 joint integrity trait (VT:0010548) right rear ankle joint diameter (CMO:0002150) 17 41176057 86176057 Rat 2301412 Kidm40 Kidney mass QTL 40 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 17 41731080 86731080 Rat 
Gene-Chemical Interaction Annotations
