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Gene: H2bc1 (H2B clustered histone 1) Rattus norvegicus
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Symbol: H2bc1
Name: H2B clustered histone 1
Description: Exhibits DNA binding activity. Predicted to be involved in several processes, including mononuclear cell migration; nucleosome organization; and plasminogen activation. Predicted to localize to the extrinsic component of plasma membrane and nuclear nucleosome. Orthologous to human HIST1H2BA (histone cluster 1 H2B family member a); PARTICIPATES IN systemic lupus erythematosus pathway; INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog); 3-methylcholanthrene (ortholog); arsane (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Hist1h2ba; histone; histone 1, H2ba; histone cluster 1 H2B family member a; histone cluster 1, H2ba; histone H2B type 1-A; histone H2B, testis; Testis-specific histone 2b; testis-specific histone H2B; Th2b
Orthologs:
Homo sapiens (human) : H2BC1 (H2B clustered histone 1)  HGNC  Alliance
Mus musculus (house mouse) : H2bc1 (H2B clustered histone 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : LOC102030314 (histone H2B type 1-A)
Pan paniscus (bonobo/pygmy chimpanzee) : LOC100979289 (histone H2B type 1-A)
Canis lupus familiaris (dog) : HIST1H2BA (histone cluster 1, H2ba)
Sus scrofa (pig) : LOC100152135 (histone H2B type 1-A-like)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01743,423,111 - 43,423,580 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01745,279,949 - 45,280,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,290,185 - 48,290,654 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11748,293,025 - 48,293,495 (+)NCBI
Celera1740,803,657 - 40,804,126 (+)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on H2bc1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 3855
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-09-24
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.