Rpl29l1 (ribosomal protein L29 like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rpl29l1 (ribosomal protein L29 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl29l1 (Ensembl: RGD1563300)
Name: ribosomal protein L29 like 1 (Ensembl:similar to 60S ribosomal protein L29 (P23))
RGD ID: 1563300
Description: INTERACTS WITH bisphenol A; glyphosate; trichloroethene
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L29-like; large ribosomal subunit protein eL29-like; LOC306926; RGD1563300; similar to 60S ribosomal protein L29 (P23)
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81735,928,175 - 35,931,227 (+)NCBIGRCr8
mRatBN7.21735,722,251 - 35,722,729 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01737,675,516 - 37,676,230 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1737,675,569 - 37,676,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01739,538,302 - 39,538,674 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41742,229,090 - 42,229,431 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1735,239,482 - 35,240,196 (+)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl29l1Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of RPL29L1 mRNACTDPMID:25181051
Rpl29l1Ratglyphosate increases methylationEXP 6480464Glyphosate results in increased methylation of RPL29L1 geneCTDPMID:31011160
Rpl29l1Rattrichloroethene decreases expressionEXP 6480464Trichloroethylene results in decreased expression of RPL29L1 mRNACTDPMID:33387578


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


.

.
Variants in Rpl29l1
1 total Variants


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
17 37675596 37675597 C A snv FXLE16/Stm (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF1A/Stm (2019) View more Information

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:83
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000032995
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat

1 to 10 of 44 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 4 15 52 54 51 22 24 22 5 117 61 33 24 45 29


RefSeq Transcripts XM_006222385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000032995   ⟹   ENSRNOP00000031049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1737,675,569 - 37,676,155 (+)Ensembl
RefSeq Acc Id: XM_006253902   ⟹   XP_006253964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,928,175 - 35,931,227 (+)NCBI
mRatBN7.21735,722,251 - 35,722,729 (+)NCBI
Rnor_6.01737,675,516 - 37,676,230 (+)NCBI
Rnor_5.01739,538,302 - 39,538,674 (+)NCBI
Sequence:
Protein RefSeqs XP_006253964 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_006253964   ⟸   XM_006253902
- Sequence:
Ensembl Acc Id: ENSRNOP00000031049   ⟸   ENSRNOT00000032995

Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8Q4-F1-model_v2 AlphaFold D3Z8Q4 1-161 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700447
Promoter ID:EPDNEW_R10958
Type:multiple initiation site
Name:RGD1563300_1
Description:similar to 60S ribosomal protein L29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01737,675,516 - 37,675,576EPDNEW


Database
Acc Id
Source(s)
BioCyc Gene G2FUF-9489 BioCyc
Ensembl Genes ENSRNOG00000025630 Ensembl
NCBI Gene 306926 ENTREZGENE
PhenoGen Rpl29l1 PhenoGen
RatGTEx ENSRNOG00000025630 RatGTEx


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl29l1  ribosomal protein L29 like 1  RGD1563300  similar to 60S ribosomal protein L29 (P23)  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1563300  similar to 60S ribosomal protein L29 (P23)   RGD1563300_predicted  similar to 60S ribosomal protein L29 (P23) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563300_predicted  similar to 60S ribosomal protein L29 (P23) (predicted)  LOC306926  similar to 60S ribosomal protein L29 (P23)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC306926  similar to 60S ribosomal protein L29 (P23)      Symbol and Name status set to provisional 70820 PROVISIONAL