Slc17a1 (solute carrier family 17 member 1) - Rat Genome Database

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Gene: Slc17a1 (solute carrier family 17 member 1) Rattus norvegicus
Analyze
Symbol: Slc17a1 (Ensembl: AABR07027750.1)
Name: solute carrier family 17 member 1
RGD ID: 620099
Description: Predicted to enable transmembrane transporter activity. Predicted to be involved in monoatomic anion transport; urate metabolic process; and urate transport. Predicted to be located in apical plasma membrane. Predicted to be active in membrane. Orthologous to human SLC17A1 (solute carrier family 17 member 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: na(+)/PI cotransporter 1; Napi-1; renal Na(+)-dependent phosphate cotransporter 1; renal sodium-dependent phosphate transport protein 1; renal sodium-phosphate transport protein 1; sodium-dependent phosphate transport protein 1; sodium/phosphate cotransporter 1; solute carrier family 17 (organic anion transporter), member 1; solute carrier family 17 (sodium phosphate), member 1; solute carrier family 17 vesicular glutamate transporter), member 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21741,219,461 - 41,255,199 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,222,049 - 41,253,304 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,289,547 - 41,319,951 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01742,893,593 - 42,923,997 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01741,177,740 - 41,209,009 (-)NCBIRnor_WKY
Rnor_6.01743,473,048 - 43,504,645 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01745,328,999 - 45,358,447 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11748,343,283 - 48,351,209 (-)NCBI
Celera1740,853,552 - 40,884,798 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1-naphthyl isothiocyanate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-azaorotic acid  (ISO)
acetamide  (EXP)
acyclovir  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
allopurinol  (ISO)
alpha-hexachlorocyclohexane  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atazanavir sulfate  (ISO)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
beta-D-glucosamine  (ISO)
bisphenol A  (EXP)
C60 fullerene  (EXP)
cadmium atom  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
ciguatoxin CTX1B  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (EXP)
coumarin  (EXP)
cyclosporin A  (ISO)
deoxycholic acid  (ISO)
dichlorine  (EXP)
flutamide  (EXP)
furan  (ISO)
glafenine  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
GW 4064  (ISO)
hypoxanthine  (ISO)
leflunomide  (EXP)
methamphetamine  (EXP)
methylmercury(1+)  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nitrofen  (EXP)
ochratoxin A  (EXP)
ozone  (EXP)
p-toluidine  (EXP)
paracetamol  (ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
pirinixic acid  (EXP,ISO)
potassium atom  (EXP)
pravastatin  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrazinecarboxamide  (EXP)
resveratrol  (ISO)
rifampicin  (ISO)
silicon dioxide  (ISO)
tetrachloromethane  (EXP)
toluene  (EXP)
Triptolide  (EXP,ISO)
valproic acid  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
apical plasma membrane  (IEA,ISO,ISS)
lysosome  (IBA)
membrane  (IBA)
plasma membrane  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Combined genealogical, mapping, and expression approaches to identify spontaneously hypertensive rat hypertension candidate genes. Hinojos CA, etal., Hypertension 2005 Apr;45(4):698-704. Epub 2005 Feb 14.
4. Differential distribution of vesicular glutamate transporters in the rat cerebellar cortex. Hioki H, etal., Neuroscience 2003;117(1):1-6.
5. Molecular cloning of two rat Na+/Pi cotransporters: evidence for differential tissue expression of transcripts. Li H and Xie Z, Cell Mol Biol Res 1995;41(5):451-60.
6. Vesicular glutamate transporters, VGluT1 and VGluT2, in the trigeminal ganglion neurons of the rat, with special reference to coexpression. Li JL, etal., J Comp Neurol 2003 Aug 18;463(2):212-20.
7. Expression of vesicular glutamate transporters, VGluT1 and VGluT2, in axon terminals of nociceptive primary afferent fibers in the superficial layers of the medullary and spinal dorsal horns of the rat. Li JL, etal., J Comp Neurol 2003 Mar 10;457(3):236-49.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12586437   PMID:14667459   PMID:14681932   PMID:15065123   PMID:19503597   PMID:27906618  


Genomics

Comparative Map Data
Slc17a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21741,219,461 - 41,255,199 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,222,049 - 41,253,304 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,289,547 - 41,319,951 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01742,893,593 - 42,923,997 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01741,177,740 - 41,209,009 (-)NCBIRnor_WKY
Rnor_6.01743,473,048 - 43,504,645 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01745,328,999 - 45,358,447 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11748,343,283 - 48,351,209 (-)NCBI
Celera1740,853,552 - 40,884,798 (-)NCBICelera
Cytogenetic Map17p11NCBI
SLC17A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38625,723,743 - 25,832,052 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl625,782,915 - 25,832,052 (-)EnsemblGRCh38hg38GRCh38
GRCh37625,783,143 - 25,832,280 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36625,891,104 - 25,940,266 (-)NCBINCBI36Build 36hg18NCBI36
Build 34625,891,295 - 25,938,776NCBI
Celera627,010,324 - 27,059,480 (-)NCBICelera
Cytogenetic Map6p22.2ENTREZGENE
HuRef625,726,038 - 25,775,499 (-)NCBIHuRef
CHM1_1625,785,355 - 25,834,494 (-)NCBICHM1_1
T2T-CHM13v2.0625,648,690 - 25,697,845 (-)NCBIT2T-CHM13v2.0
Slc17a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391324,051,607 - 24,079,713 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1324,051,733 - 24,079,713 (+)EnsemblGRCm39 Ensembl
GRCm381323,867,624 - 23,895,730 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,867,750 - 23,895,730 (+)EnsemblGRCm38mm10GRCm38
MGSCv371323,962,142 - 23,987,599 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361323,877,797 - 23,903,195 (+)NCBIMGSCv36mm8
Celera1324,101,937 - 24,127,396 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map139.97NCBI
Slc17a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554831,268,516 - 1,298,456 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554831,269,153 - 1,296,329 (+)NCBIChiLan1.0ChiLan1.0
SLC17A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1626,274,658 - 26,323,658 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl626,289,651 - 26,323,698 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0625,616,393 - 25,665,603 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC17A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13523,732,632 - 23,785,296 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3523,738,537 - 23,783,959 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3523,610,821 - 23,687,809 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03523,823,930 - 23,900,871 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3523,854,234 - 23,901,092 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13523,633,634 - 23,717,078 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03523,684,268 - 23,767,995 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,121,999 - 25,200,843 (-)NCBIUU_Cfam_GSD_1.0
SLC17A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,523,022 - 20,574,460 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,522,650 - 20,589,037 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2721,858,431 - 21,899,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC17A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,416,337 - 46,501,367 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1746,417,019 - 46,447,307 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604425,718,590 - 25,771,921 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc17a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247561,196,891 - 1,249,390 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247561,195,037 - 1,261,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc17a1
131 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:46
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000066313
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000066313   ⟹   ENSRNOP00000061056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,222,049 - 41,253,304 (-)Ensembl
RefSeq Acc Id: NM_133554   ⟹   NP_598238
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,222,045 - 41,253,304 (-)NCBI
Rnor_6.01743,473,048 - 43,504,645 (-)NCBI
Rnor_5.01745,328,999 - 45,358,447 (-)NCBI
Celera1740,853,552 - 40,884,798 (-)RGD
Sequence:
RefSeq Acc Id: XM_039095318   ⟹   XP_038951246
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,222,338 - 41,255,199 (-)NCBI
RefSeq Acc Id: XR_005495230
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,219,461 - 41,255,199 (-)NCBI
RefSeq Acc Id: XR_005495231
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,219,461 - 41,253,075 (-)NCBI
RefSeq Acc Id: XR_005495232
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,219,461 - 41,255,199 (-)NCBI
RefSeq Acc Id: XR_005495233
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,219,461 - 41,248,105 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_598238   ⟸   NM_133554
- UniProtKB: Q6AZ46 (UniProtKB/TrEMBL),   F1M6S8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038951246   ⟸   XM_039095318
- Peptide Label: isoform X1
- UniProtKB: F1M6S8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000061056   ⟸   ENSRNOT00000066313
Protein Domains
MFS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62795-F1-model_v2 AlphaFold Q62795 1-465 view protein structure
AF-A0A0G2K6H6-F1-model_v2 AlphaFold A0A0G2K6H6 1-466 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620099 AgrOrtholog
BioCyc Gene G2FUF-9391 BioCyc
Ensembl Genes ENSRNOG00000042692 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000061056 ENTREZGENE
  ENSRNOP00000061056.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066313 ENTREZGENE
  ENSRNOT00000066313.4 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7109368 IMAGE-MGC_LOAD
InterPro MFS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pi_cotranspt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:171080 UniProtKB/TrEMBL
MGC_CLONE MGC:93217 IMAGE-MGC_LOAD
NCBI Gene 171080 ENTREZGENE
Pfam MFS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc17a1 PhenoGen
PROSITE MFS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs 2A0114euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F1M6S8 ENTREZGENE
  NPT1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6AZ46 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1M6S8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Slc17a1  solute carrier family 17 member 1  Slc17a1  solute carrier family 17 (organic anion transporter), member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc17a1  solute carrier family 17 (organic anion transporter), member 1  Slc17a1  solute carrier family 17 (sodium phosphate), member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-14 Slc17a1  solute carrier family 17 (sodium phosphate), member 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-06-18   solute carrier family 17 (sodium phosphate), member 1  Slc17a1  solute carrier family 17 vesicular glutamate transporter), member 1  Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2002-08-07 Slc17a1  solute carrier family 17 vesicular glutamate transporter), member 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expression is decreased 1.5 fold in SHR compared with WKY rats 1357414