Scfw6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Scfw6 (Subcutaneous fat weight QTL 6) Rattus norvegicus

Symbol: Scfw6
Name: Subcutaneous fat weight QTL 6
RGD ID: 9589057
Also known as: percentage of subcutaneous fat
Trait: subcutaneous adipose mass   (VT:1000472)    
Measurement Type: abdominal subcutaneous fat pad weight   (CMO:0002069)    
LOD Score: 8.62
P Value: 0.001
Variance: 27.1
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01716,409,641 - 61,409,641RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41719,150,649 - 64,150,649RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain


References - curated
1. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.


Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D17Rat118)
Rat AssemblyChrPosition (strand)Source
Rnor_5.01738,909,435 - 38,909,847NCBI
RGSC_v3.41741,650,444 - 41,650,855RGD
RGSC_v3.11741,653,285 - 41,653,696RGD
RH 3.4 Map17391.8UniSTS
RH 3.4 Map17391.8RGD
RH 2.0 Map17285.9RGD
SHRSP x BN Map1728.1999RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general confidence interval 47.5-82.3 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: at the end of the HPA axis function experiment, body weight was taken; subcutaneous fat was removed and weighed and percentage was calculated 8694157
qtl_general software package used: MultiQTL software 8694157
qtl_general an additional peak at D17Rat43 with confidence interval 57.7-97.3 Mb was observed 8694157