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ONTOLOGY REPORT - ANNOTATIONS


Term:response to light stimulus
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Accession:GO:0009416 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.


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response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:18001324 PMID:21873635 RGD:2301033, RGD:13792537 NCBI chr10:101,827,072...101,831,805
Ensembl chr10:101,827,301...101,831,801
JBrowse link
G Asns asparagine synthetase (glutamine-hydrolyzing) IEP transpupillary thermotherapy laser RGD PMID:16885923 RGD:2302304 NCBI chr 4:35,784,995...35,803,474
Ensembl chr 4:35,785,237...35,803,423
JBrowse link
G Bdnf brain-derived neurotrophic factor IEP RGD PMID:17640634 RGD:8655603 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 acts_upstream_of_or_within
involved_in
IEP
ISO
IDA
(PMID:15038852)
PMID:12397359
RGD PMID:15038852 PMID:12397359 PMID:12397359 RGD:625726, RGD:625726 NCBI chr 4:141,618,453...141,624,154
Ensembl chr 4:141,618,476...141,624,774
JBrowse link
G Clock clock circadian regulator IEP RGD PMID:10471199 RGD:10401879 NCBI chr14:31,908,542...31,992,673
Ensembl chr14:31,908,566...31,990,400
JBrowse link
G Clu clusterin IEP RGD PMID:11803476 RGD:9062370 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315
JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:6294193|PMID:29561690)
UniProt
RGD
PMID:29561690 GO_REF:0000024 MGI:6294193 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091
JBrowse link
G Cry2 cryptochrome circadian regulator 2 involved_in ISO
ISS
(PMID:15751956)
(MGI:6294193|PMID:29561690)
GO_REF:0000024
RGD
UniProt
PMID:15751956 PMID:29561690 GO_REF:0000024 MGI:6294193 NCBI chr 3:78,374,995...78,405,001
Ensembl chr 3:78,374,995...78,404,965
JBrowse link
G Dnm2 dynamin 2 IEP RGD PMID:22666495 RGD:9685159 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157
JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO MGI:2387895 (MGI:3639799|PMID:16715079) RGD PMID:16715079 MGI:3639799 NCBI chr 8:49,708,903...49,772,888
Ensembl chr 8:49,708,927...49,772,875
JBrowse link
G Dusp1 dual specificity phosphatase 1 IEP RGD PMID:15527789 RGD:2298681 NCBI chr10:16,680,489...16,683,276 JBrowse link
G Dynlrb1 dynein light chain roadblock-type 1 IEP RGD PMID:10816553 RGD:633064 NCBI chr 3:143,742,427...143,764,227
Ensembl chr 3:143,742,586...143,764,227
JBrowse link
G Elk1 ETS transcription factor ELK1 IDA RGD PMID:10383826 RGD:7488912 NCBI chr  X:1,138,826...1,155,713
Ensembl chr  X:1,139,756...1,155,713
JBrowse link
G Fech ferrochelatase acts_upstream_of_or_within ISO MGI:1858114 (MGI:50545|PMID:1939658) RGD PMID:1939658 MGI:50545 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
G Fmr1 FMRP translational regulator 1 IEP RGD PMID:15564573 RGD:1601175 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit IEP RGD PMID:11146118 RGD:2293791 NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit IEP RGD PMID:11146118 RGD:2293791 NCBI chr 6:24,297,898...24,319,157
Ensembl chr 6:24,300,956...24,320,034
JBrowse link
G Gh1 growth hormone 1 IDA RGD PMID:19091612 RGD:2315626 NCBI chr10:91,228,102...91,230,079
Ensembl chr10:91,228,103...91,230,078
JBrowse link
G Gja10 gap junction protein, alpha 10 acts_upstream_of_or_within ISO MGI:3043946 (MGI:3654563|PMID:16820008) RGD PMID:16820008 MGI:3654563 NCBI chr 5:46,994,964...47,002,902
Ensembl chr 5:46,992,946...46,996,570
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A IEP RGD PMID:19850826 RGD:2325946 NCBI chr10:5,630,684...6,043,341
Ensembl chr10:5,631,369...6,044,637
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within IEP
ISO
MGI:2668595 (MGI:1334014|PMID:10097103) RGD PMID:10097103 PMID:3950623 MGI:1334014, RGD:1600007 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit IEP RGD PMID:11146118 RGD:2293791 NCBI chr19:23,176,265...23,178,049
Ensembl chr19:23,176,294...23,178,035
JBrowse link
G Jund JunD proto-oncogene, AP-1 transcription factor subunit IEP RGD PMID:11146118 RGD:2293791 NCBI chr16:18,734,121...18,735,799
Ensembl chr16:18,734,122...18,735,799
JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO MGI:3839794 (MGI:5638946|PMID:25834037) RGD PMID:25834037 MGI:5638946 NCBI chr 8:45,116,771...45,193,320
Ensembl chr 8:45,118,814...45,193,181
JBrowse link
G Mapk10 mitogen activated protein kinase 10 involved_in ISS
ISO
GO_REF:0000024
(MGI:5431019|PMID:22441692)
UniProt
RGD
PMID:22441692 GO_REF:0000024 MGI:5431019 NCBI chr14:6,497,662...6,790,109
Ensembl chr14:6,497,707...6,786,201
JBrowse link
G Mat2a methionine adenosyltransferase 2A IEP RGD PMID:15504733 RGD:1598692 NCBI chr 4:104,489,877...104,495,447
Ensembl chr 4:104,488,466...104,495,493
JBrowse link
G Myo15a myosin XVA IDA RGD PMID:21479269 RGD:150429616 NCBI chr10:45,277,619...45,335,953
Ensembl chr10:45,278,737...45,335,340
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 IEP RGD PMID:17640634 RGD:8655603 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase IEP RGD PMID:15979612 RGD:8694099 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Opn4 opsin 4 NOT|acts_upstream_of_or_within ISO (MGI:5925970|PMID:26320947) RGD PMID:26320947 MGI:5925970 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Per1 period circadian regulator 1 acts_upstream_of_or_within ISO (PMID:15038852) RGD PMID:15038852 NCBI chr10:53,800,126...53,814,963
Ensembl chr10:53,805,535...53,814,431
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit IEP RGD PMID:15979612 RGD:8694099 NCBI chr 1:133,382,764...133,399,578
Ensembl chr 1:133,382,766...133,398,567
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (MGI:3830801|PMID:19041764) RGD PMID:19041764 MGI:3830801 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO MGI:2181812 (MGI:3655007|PMID:16723493) RGD PMID:16723493 MGI:3655007 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO MGI:3608888 (MGI:3692154|PMID:16221497) RGD PMID:16221497 MGI:3692154 NCBI chr 1:195,935,162...195,941,469
Ensembl chr 1:195,935,349...195,941,467
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IEP RGD PMID:17389522 RGD:9585654 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Slc1a2 solute carrier family 1 member 2 acts_upstream_of_or_within ISO MGI:2449707 (MGI:1203466|PMID:9539795) RGD PMID:9539795 MGI:1203466 NCBI chr 3:89,005,129...89,126,498
Ensembl chr 3:89,005,129...89,126,498
JBrowse link
G Slc1a3 solute carrier family 1 member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1931872 (MGI:1203466|PMID:9539795)
Ensembl
RGD
PMID:9539795 GO_REF:0000107 MGI:1203466 NCBI chr 2:57,755,495...57,830,605
Ensembl chr 2:57,755,497...57,830,605
JBrowse link
G Slc4a10 solute carrier family 4 member 10 acts_upstream_of_or_within ISO MGI:3774019 (MGI:3772751|PMID:18165320) RGD PMID:18165320 MGI:3772751 NCBI chr 3:46,665,076...46,959,088
Ensembl chr 3:46,665,265...46,957,268
JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 IEP RGD PMID:8700883 RGD:632616 NCBI chr 1:41,512,146...41,983,382
Ensembl chr 1:41,512,030...41,983,322
JBrowse link
G Th tyrosine hydroxylase IEP RGD PMID:21185915 RGD:5128767 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
JBrowse link
absorption of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh11 retinol dehydrogenase 11 acts_upstream_of_or_within ISO MGI:3586379 (MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:3584215 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
JBrowse link
G Rs1 retinoschisin 1 acts_upstream_of_or_within ISO MGI:3056058 (MGI:3055638|PMID:15326152) RGD PMID:15326152 MGI:3055638 NCBI chr  X:33,963,657...33,992,115
Ensembl chr  X:33,963,657...33,992,115
JBrowse link
cellular response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt2 AKT serine/threonine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158456 (MGI:3695811|PMID:17202487)
Ensembl
RGD
PMID:17202487 GO_REF:0000107 MGI:3695811 NCBI chr 1:82,877,228...82,933,828
Ensembl chr 1:82,883,547...82,933,817
JBrowse link
G Slc24a2 solute carrier family 24 member 2 involved_in ISO (MGI:6116933|PMID:28650316) RGD PMID:28650316 MGI:6116933 NCBI chr 5:101,499,536...101,739,337
Ensembl chr 5:101,502,278...101,739,337
JBrowse link
G Slc24a4 solute carrier family 24 member 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:6116933|PMID:28650316)
Ensembl
RGD
PMID:28650316 GO_REF:0000107 MGI:6116933 NCBI chr 6:121,278,746...121,419,811
Ensembl chr 6:121,280,031...121,414,949
JBrowse link
cellular response to light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (MGI:3696487|PMID:17234588) RGD PMID:17234588 MGI:3696487 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Gpr88 G-protein coupled receptor 88 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:204,191,443...204,199,576
Ensembl chr 2:204,191,427...204,199,733
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEP RGD PMID:17475674 RGD:9068879 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 IEP RGD PMID:24202060 RGD:12910722 NCBI chr11:31,580,951...31,594,116
Ensembl chr11:31,580,742...31,593,901
JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:151,905,096...151,925,322
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Opn3 opsin 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn4 opsin 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 involved_in ISO
IBA
(MGI:6376341|PMID:31607531)
PMID:21873635
RGD PMID:31607531 PMID:21873635 MGI:6376341, RGD:13792537 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Rgr retinal G protein coupled receptor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223
JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:4849309|PMID:21052544)
Ensembl
RGD
PMID:21052544 PMID:21873635 GO_REF:0000107 MGI:4849309, RGD:13792537 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rp1 RP1, axonemal microtubule associated acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO MGI:2386674 (MGI:1354839|PMID:10725384) RGD PMID:10725384 MGI:1354839 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:218,362,195...218,375,202
Ensembl chr 2:218,362,200...218,374,599
JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:19896109)
GO_REF:0000107
MGI:4421441 (MGI:4420740|PMID:19966281), (MGI:4849309|PMID:21052544)
(MGI:4398796|PMID:19861548)
RGD
Ensembl
PMID:19861548 PMID:19896109 PMID:19966281 PMID:21052544 GO_REF:0000107 MGI:4398796 MGI:4420740 MGI:4849309 NCBI chr 1:117,718,896...117,835,434
Ensembl chr 1:117,718,896...117,834,605
JBrowse link
cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 involved_in ISO
ISS
(PMID:19424603)
GO_REF:0000024
RGD
UniProt
PMID:19424603 GO_REF:0000024 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Atf4 activating transcription factor 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO (PMID:9925639) RGD PMID:9925639 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
JBrowse link
G Aurkb aurora kinase B involved_in ISO
ISS
(PMID:20959462)
GO_REF:0000024
RGD
UniProt
PMID:20959462 GO_REF:0000024 NCBI chr10:53,744,290...53,750,831
Ensembl chr10:53,745,142...53,750,837
JBrowse link
G Bak1 BCL2-antagonist/killer 1 involved_in ISO (PMID:15901672)
(MGI:3689797|PMID:15901672)
RGD PMID:15901672 MGI:3689797 NCBI chr20:5,100,480...5,109,669
Ensembl chr20:5,100,480...5,109,264
JBrowse link
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:98834 (MGI:3042308|PMID:14963330)
Ensembl
RGD
PMID:14963330 GO_REF:0000107 MGI:3042308 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bmf Bcl2 modifying factor involved_in ISO (PMID:23629966)
(MGI:5490676|PMID:23629966)
RGD PMID:23629966 MGI:5490676 NCBI chr 3:105,499,534...105,520,159
Ensembl chr 3:105,499,538...105,520,145
JBrowse link
G Casp9 caspase 9 involved_in ISO (PMID:15657060) RGD PMID:15657060 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626
JBrowse link
G Cdc25a cell division cycle 25A involved_in ISO
IEA
(PMID:19966869)
GO_REF:0000107
RGD
Ensembl
PMID:19966869 GO_REF:0000107 NCBI chr 8:109,864,356...109,882,734
Ensembl chr 8:109,864,478...109,882,701
JBrowse link
G Cops9 COP9 signalosome subunit 9 involved_in ISO (PMID:26456823) RGD PMID:26456823 NCBI chr 9:93,209,843...93,214,774
Ensembl chr 9:93,209,843...93,213,317
JBrowse link
G Crebbp CREB binding protein involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24939902)
Ensembl
UniProt
RGD
PMID:24939902 GO_REF:0000024 GO_REF:0000107 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888
JBrowse link
G Ddias DNA damage-induced apoptosis suppressor acts_upstream_of_or_within ISO (MGI:3718924|PMID:17515607) RGD PMID:17515607 MGI:3718924 NCBI chr 1:146,906,150...146,930,462
Ensembl chr 1:146,906,154...146,930,462
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
ISS
(PMID:27940037)
GO_REF:0000024
RGD
UniProt
PMID:27940037 GO_REF:0000024 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in ISO (MGI:5700311|PMID:12176355) RGD PMID:12176355 MGI:5700311 NCBI chr 3:105,356,261...105,441,630
Ensembl chr 3:105,356,261...105,441,630
JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:5700311|PMID:12176355)
UniProt
RGD
PMID:12176355 GO_REF:0000024 MGI:5700311 NCBI chr 6:97,672,829...97,697,499
Ensembl chr 6:97,672,766...97,706,225
JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:24939902) RGD PMID:24939902 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO UniProtKB:Q15554 (PMID:17055345) RGD PMID:17055345 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 2:170,150,552...170,310,698
Ensembl chr 2:170,149,694...170,309,941
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5602914|PMID:24813610)
UniProt
RGD
PMID:24813610 GO_REF:0000024 MGI:5602914 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Kdm1a lysine demethylase 1A acts_upstream_of_or_within ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Mapk13 mitogen activated protein kinase 13 involved_in ISO
IEA
(PMID:9218798)
GO_REF:0000107
RGD
Ensembl
PMID:9218798 GO_REF:0000107 NCBI chr20:6,835,277...6,845,500
Ensembl chr20:6,835,320...6,844,222
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 IMP RGD PMID:8875991 RGD:2304246 NCBI chr10:34,169,661...34,211,138
Ensembl chr10:34,169,675...34,210,178
JBrowse link
G Mettl3 methyltransferase-like 3 involved_in ISO (PMID:28297716) RGD PMID:28297716 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:17873522) RGD PMID:17873522 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G N4bp1 Nedd4 binding protein 1 involved_in ISO (PMID:17592138)
(MGI:3829128|PMID:17592138)
RGD PMID:17592138 MGI:3829128 NCBI chr19:20,222,811...20,273,570
Ensembl chr19:20,222,776...20,273,570
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO (PMID:17996703) RGD PMID:17996703 NCBI chr 8:73,384,095...73,468,951
Ensembl chr 8:73,383,695...73,468,951
JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 acts_upstream_of_or_within ISO MGI:97583 (MGI:3709926|PMID:17242187) RGD PMID:17242187 MGI:3709926 NCBI chr15:29,286,998...29,314,610
Ensembl chr15:29,305,535...29,314,610
JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor involved_in ISO (PMID:20959462) RGD PMID:20959462 NCBI chr 5:166,820,075...166,831,951
Ensembl chr 5:166,820,161...166,831,949
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:19160485) RGD PMID:19160485 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component involved_in ISO (PMID:27427983) RGD PMID:27427983 NCBI chr 1:118,401,302...118,402,629 JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO (PMID:24289924) RGD PMID:24289924 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Pbk PDZ binding kinase acts_upstream_of_or_within ISO MGI:5293435 (MGI:5293269|PMID:21715333) RGD PMID:21715333 MGI:5293269 NCBI chr15:40,022,873...40,034,014
Ensembl chr15:40,023,002...40,034,014
JBrowse link
G Pcna proliferating cell nuclear antigen involved_in IEP
ISS
ISO
GO_REF:0000024
(PMID:24939902)
UniProt
RGD
PMID:24939902 PMID:8905661 GO_REF:0000024, RGD:10448977 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103296|MGI:2149414 (MGI:3709926|PMID:17242187)
Ensembl
RGD
PMID:17242187 GO_REF:0000107 MGI:3709926 NCBI chr 2:32,878,942...32,963,611
Ensembl chr 2:32,882,032...32,963,631
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:24939902)
UniProt
Ensembl
RGD
PMID:24939902 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Polk DNA polymerase kappa involved_in ISO (PMID:28297716) RGD PMID:28297716 NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313
JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A IEP RGD PMID:9811446 RGD:9999409 NCBI chr 1:96,000,053...96,003,128
Ensembl chr 1:96,000,058...96,003,171
JBrowse link
G Prkcd protein kinase C, delta involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17303575)
Ensembl
UniProt
RGD
PMID:17303575 GO_REF:0000024 GO_REF:0000107 NCBI chr16:5,769,226...5,807,214
Ensembl chr16:5,769,215...5,799,352
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IEP RGD PMID:22306367 RGD:5688265 NCBI chr13:62,164,080...62,169,770
Ensembl chr13:62,163,932...62,172,188
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:17925408 RGD:10044023 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Ptprk protein tyrosine phosphatase, receptor type, K involved_in ISO (PMID:16849327) RGD PMID:16849327 NCBI chr 1:16,738,896...17,236,687
Ensembl chr 1:16,850,576...17,103,605
JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5430884|PMID:19358743)
UniProt
RGD
PMID:19358743 GO_REF:0000024 MGI:5430884 NCBI chr 9:83,630,037...83,748,690
Ensembl chr 9:83,630,063...83,748,689
JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in ISO (PMID:21659603) RGD PMID:21659603 NCBI chr 4:161,634,047...161,639,437
Ensembl chr 4:161,634,048...161,639,371
JBrowse link
G Rnf168 ring finger protein 168 acts_upstream_of_or_within ISO (MGI:5562615|PMID:24217620) RGD PMID:24217620 MGI:5562615 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
JBrowse link
G Rpl26 ribosomal protein L26 involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:53,610,836...53,613,966
Ensembl chr10:53,610,421...53,613,966
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA
ISO
GO_REF:0000107
(PMID:27906959)
Ensembl
RGD
PMID:27906959 GO_REF:0000107 NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140
JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1 involved_in ISO (PMID:17303575) RGD PMID:17303575 NCBI chr 1:159,892,946...159,896,789
Ensembl chr 1:159,892,859...159,896,794
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:24289924) RGD PMID:24289924 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Tmem161a transmembrane protein 161A involved_in ISO (PMID:16551573) RGD PMID:16551573 NCBI chr16:19,237,638...19,248,151
Ensembl chr16:19,238,487...19,248,087
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
ISO (PMID:16213212), (PMID:23629966)
(MGI:5490676|PMID:23629966)
MGI:99702 (MGI:3042308|PMID:14963330)
RGD PMID:14963330 PMID:16213212 PMID:23629966 MGI:3042308 MGI:5490676 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2153600|PMID:11557757)
Ensembl
RGD
PMID:11557757 GO_REF:0000107 MGI:2153600 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:5014018|PMID:20511593) RGD PMID:20511593 MGI:5014018 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Triap1 TP53 regulated inhibitor of apoptosis 1 involved_in ISO (PMID:15735003) RGD PMID:15735003 NCBI chr12:41,267,534...41,270,053
Ensembl chr12:41,267,549...41,270,042
JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in ISO
IEA
(PMID:17873522)
GO_REF:0000107
RGD
Ensembl
PMID:17873522 GO_REF:0000107 NCBI chr 8:49,325,766...49,386,229
Ensembl chr 8:49,325,867...49,386,229
JBrowse link
G Usp47 ubiquitin specific peptidase 47 involved_in ISO (MGI:4839431|PMID:19966869) RGD PMID:19966869 MGI:4839431 NCBI chr 1:166,152,104...166,235,312
Ensembl chr 1:166,152,199...166,235,312
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996
JBrowse link
cellular response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cers1 ceramide synthase 1 involved_in ISO (PMID:19800881) RGD PMID:19800881 NCBI chr16:19,097,309...19,112,519
Ensembl chr16:19,104,466...19,112,519
JBrowse link
G Mme membrane metallo-endopeptidase involved_in ISS
ISO
GO_REF:0000024
(PMID:20876573)
UniProt
RGD
PMID:20876573 GO_REF:0000024 NCBI chr 2:147,686,913...147,803,808
Ensembl chr 2:147,722,086...147,803,792
JBrowse link
G Mmp1 matrix metallopeptidase 1 involved_in ISO (PMID:31380578) RGD PMID:31380578 NCBI chr 8:4,658,588...4,679,099
Ensembl chr 8:4,658,588...4,679,097
JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:31380578)
Ensembl
UniProt
RGD
PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
JBrowse link
G Mmp3 matrix metallopeptidase 3 involved_in ISO
IEA
ISS
(PMID:31380578)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:4,640,397...4,653,963
Ensembl chr 8:4,640,416...4,653,961
JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in ISO
IEA
(PMID:31380578)
GO_REF:0000107
RGD
Ensembl
PMID:31380578 GO_REF:0000107 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:31380578)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:31380578 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Opn3 opsin 3 involved_in ISO (PMID:31380578) RGD PMID:31380578 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn5 opsin 5 involved_in ISO (PMID:31380578) RGD PMID:31380578 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Ppid peptidylprolyl isomerase D involved_in ISS
ISO
GO_REF:0000024
(PMID:23220213)
UniProt
RGD
PMID:23220213 GO_REF:0000024 NCBI chr 2:164,727,803...164,740,168
Ensembl chr 2:164,727,779...164,740,221
JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:31380578)
UniProt
RGD
PMID:31380578 GO_REF:0000024 NCBI chr  X:1,212,969...1,217,714
Ensembl chr  X:1,212,972...1,217,664
JBrowse link
cellular response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A involved_in ISO (MGI:5613877|PMID:25329316) RGD PMID:25329316 MGI:5613877 NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585
JBrowse link
G Crip1 cysteine rich protein 1 involved_in ISO
ISS
(PMID:20415737) RGD PMID:20415737 PMID:20415737 RGD:8553326 NCBI chr 6:132,226,746...132,234,620
Ensembl chr 6:132,226,746...132,234,620
JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21699545)
UniProt
Ensembl
RGD
PMID:21699545 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,250,654...108,254,526
Ensembl chr 8:108,250,667...108,260,210
JBrowse link
G Hyal2 hyaluronidase 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21699545)
UniProt
Ensembl
RGD
PMID:21699545 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850
JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISO
IEA
(PMID:21699545)
GO_REF:0000107
RGD
Ensembl
PMID:21699545 GO_REF:0000107 NCBI chr 8:108,254,385...108,260,020
Ensembl chr 8:108,250,667...108,260,647
JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO (PMID:22355679) RGD PMID:22355679 NCBI chr10:46,167,158...46,170,176
Ensembl chr10:46,167,217...46,170,155
JBrowse link
G Mme membrane metallo-endopeptidase involved_in ISO
ISS
(PMID:20876573)
GO_REF:0000024
RGD
UniProt
PMID:20876573 GO_REF:0000024 NCBI chr 2:147,686,913...147,803,808
Ensembl chr 2:147,722,086...147,803,792
JBrowse link
G Rpl13a ribosomal protein L13A IEP RGD PMID:10483362 RGD:11036101 NCBI chr 1:95,609,374...95,612,557 JBrowse link
G Rpl35 ribosomal protein L35 IEP RGD PMID:10483362 RGD:11036101 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243
JBrowse link
G Stk11 serine/threonine kinase 11 involved_in ISO (PMID:25329316)
(MGI:5613877|PMID:25329316)
RGD PMID:25329316 MGI:5613877 NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315
JBrowse link
cellular response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ei24 EI24, autophagy associated transmembrane protein acts_upstream_of_or_within ISO MGI:98834 (MGI:5543725|PMID:24014029) RGD PMID:24014029 MGI:5543725 NCBI chr 8:36,494,289...36,510,653
Ensembl chr 8:36,494,289...36,510,571
JBrowse link
G Impact impact RWD domain protein involved_in ISS
ISO
GO_REF:0000024
(MGI:5576818|PMID:24333428)
UniProt
RGD
PMID:24333428 GO_REF:0000024 MGI:5576818 NCBI chr18:4,108,872...4,147,571
Ensembl chr18:4,108,853...4,147,569
JBrowse link
G Mdm2 MDM2 proto-oncogene IEP RGD PMID:14558917 RGD:2317408 NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
JBrowse link
G Polh DNA polymerase eta acts_upstream_of_or_within ISO MGI:1347081|MGI:3614412 (MGI:3695544|PMID:17114294) RGD PMID:17114294 MGI:3695544 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723
JBrowse link
G Poli DNA polymerase iota acts_upstream_of_or_within ISO MGI:1891457|MGI:3055735 (MGI:3695544|PMID:17114294) RGD PMID:17114294 MGI:3695544 NCBI chr18:64,116,774...64,134,373
Ensembl chr18:64,116,774...64,163,418
JBrowse link
G RGD1306233 similar to hypothetical protein MGC29761 acts_upstream_of_or_within ISO (MGI:4868626|PMID:21159655) RGD PMID:21159655 MGI:4868626 NCBI chr 3:11,797,031...11,801,568
Ensembl chr 3:11,797,031...11,801,568
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO MGI:108090 (MGI:5543725|PMID:24014029) RGD PMID:24014029 MGI:5543725 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
cone photoresponse recovery term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc24a2 solute carrier family 24 member 2 involved_in ISO (MGI:6116933|PMID:28650316) RGD PMID:28650316 MGI:6116933 NCBI chr 5:101,499,536...101,739,337
Ensembl chr 5:101,502,278...101,739,337
JBrowse link
G Slc24a4 solute carrier family 24 member 4 involved_in ISO
IEA
(MGI:6116933|PMID:28650316)
GO_REF:0000107
RGD
Ensembl
PMID:28650316 GO_REF:0000107 MGI:6116933 NCBI chr 6:121,278,746...121,419,811
Ensembl chr 6:121,280,031...121,414,949
JBrowse link
dark adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnb5 G protein subunit beta 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598)
GO_REF:0000107
RGD
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr 8:76,076,227...76,104,151
Ensembl chr 8:76,073,306...76,105,069
JBrowse link
G Rgs9 regulator of G-protein signaling 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598)
GO_REF:0000107
RGD
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr10:94,195,265...94,270,892
Ensembl chr10:94,197,054...94,270,892
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099
JBrowse link
detection of light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde6b phosphodiesterase 6B acts_upstream_of_or_within ISO MGI:1856373 (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO MGI:2181812 (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223
JBrowse link
G Best1 bestrophin 1 acts_upstream_of_or_within ISO MGI:3795281 (MGI:3795256|PMID:16636205) RGD PMID:16636205 MGI:3795256 NCBI chr 1:206,629,340...206,646,085
Ensembl chr 1:206,629,500...206,646,063
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F involved_in ISO (PMID:7571473) RGD PMID:7571473 NCBI chr  X:14,868,096...14,896,413
Ensembl chr  X:14,868,024...14,896,413
JBrowse link
G Cacna2d4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 involved_in ISO (PMID:17033974) RGD PMID:17033974 NCBI chr 4:152,408,657...152,524,614
Ensembl chr 4:152,408,657...152,521,268
JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO MGI:1856936 (MGI:3795256|PMID:16636205) RGD PMID:16636205 MGI:3795256 NCBI chr 3:36,906,771...37,169,191
Ensembl chr 3:36,910,427...37,168,944
JBrowse link
G Ccdc66 coiled-coil domain containing 66 involved_in ISO (MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:5141557 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023
JBrowse link
G Cep250 centrosomal protein 250 involved_in ISO (MGI:6317055|PMID:30998843) RGD PMID:30998843 MGI:6317055 NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (MGI:5315300|PMID:22447858) RGD PMID:22447858 MGI:5315300 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Gja10 gap junction protein, alpha 10 acts_upstream_of_or_within ISO MGI:3043946 (MGI:3654563|PMID:16820008) RGD PMID:16820008 MGI:3654563 NCBI chr 5:46,994,964...47,002,902
Ensembl chr 5:46,992,946...46,996,570
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within
ISO (PMID:17584859)
MGI:2152779 (MGI:3772743|PMID:18171936)
RGD PMID:17584859 PMID:18171936 MGI:3772743 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within
ISO (PMID:12077706)
MGI:3588845 (MGI:3714271|PMID:17065522)
RGD PMID:12077706 PMID:17065522 MGI:3714271 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Grm6 glutamate metabotropic receptor 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17405131)
UniProt
RGD
PMID:17405131 GO_REF:0000024 NCBI chr10:35,167,985...35,182,717
Ensembl chr10:35,167,985...35,182,717
JBrowse link
G Gucy2f guanylate cyclase 2F involved_in ISO (MGI:3708225|PMID:17255100) RGD PMID:17255100 MGI:3708225 NCBI chr  X:105,710,356...105,808,183
Ensembl chr  X:105,710,356...105,808,183
JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO MGI:1856523|MGI:6367783|MGI:6367794|MGI:97998 (MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485) RGD PMID:26420485 PMID:28053051 MGI:5905515 MGI:6305433 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (MGI:3687059|PMID:12484775) RGD PMID:12484775 MGI:3687059 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Reep6 receptor accessory protein 6 involved_in ISO
ISS
(PMID:27889058)
GO_REF:0000024
RGD
UniProt
PMID:27889058 GO_REF:0000024 NCBI chr 7:9,373,927...9,380,845
Ensembl chr 7:9,373,927...9,380,597
JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:3028628 (MGI:3027216|PMID:14625292)
PMID:21873635
RGD PMID:14625292 PMID:21873635 MGI:3027216, RGD:13792537 NCBI chr 1:88,249,438...88,250,151
Ensembl chr 1:88,249,438...88,250,151
JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO MGI:102791 (MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:5905515 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Rpgrip1 RPGR interacting protein 1 involved_in ISO (PMID:21521437) RGD PMID:21521437 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Sema5a semaphorin 5A acts_upstream_of_or_within ISO MGI:107555 (MGI:5140622|PMID:21835343) RGD PMID:21835343 MGI:5140622 NCBI chr 2:83,309,843...83,741,084
Ensembl chr 2:83,309,843...83,741,084
JBrowse link
G Sema5b semaphorin 5B acts_upstream_of_or_within ISO MGI:107556 (MGI:5140622|PMID:21835343) RGD PMID:21835343 MGI:5140622 NCBI chr11:65,102,031...65,225,456
Ensembl chr11:65,102,031...65,225,311
JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073
JBrowse link
detection of UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fech ferrochelatase acts_upstream_of_or_within ISO MGI:2384729 (MGI:2384247|PMID:12149233) RGD PMID:12149233 MGI:2384247 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348
JBrowse link
detection of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr88 G-protein coupled receptor 88 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:204,191,443...204,199,576
Ensembl chr 2:204,191,427...204,199,733
JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (MGI:5447580|PMID:23172916) RGD PMID:23172916 MGI:5447580 NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403
JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:151,905,096...151,925,322
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Opn3 opsin 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn4 opsin 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Rgr retinal G protein coupled receptor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:218,362,195...218,375,202
Ensembl chr 2:218,362,200...218,374,599
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO
ISS
(PMID:1730053)
GO_REF:0000024
RGD
UniProt
PMID:1730053 GO_REF:0000024 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (MGI:5562498|PMID:23993650) RGD PMID:23993650 MGI:5562498 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
entrainment of circadian clock by photoperiod term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase TAS RGD PMID:8770929 RGD:1298540 NCBI chr10:101,827,072...101,831,805
Ensembl chr10:101,827,301...101,831,801
JBrowse link
G Atoh7 atonal bHLH transcription factor 7 involved_in ISO (MGI:5699646|PMID:26392540) RGD PMID:26392540 MGI:5699646 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275
JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 involved_in IEA
ISO
GO_REF:0000107
(MGI:3798698|PMID:18411297)
Ensembl
RGD
PMID:18411297 GO_REF:0000107 MGI:3798698 NCBI chr 4:141,618,453...141,624,154
Ensembl chr 4:141,618,476...141,624,774
JBrowse link
G Crtc1 CREB regulated transcription coactivator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5532783|PMID:23993098)
UniProt
RGD
PMID:23993098 GO_REF:0000024 MGI:5532783 NCBI chr16:18,988,197...19,046,913
Ensembl chr16:18,988,250...19,043,381
JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5490394|PMID:23616524)
PMID:21873635
UniProt
RGD
PMID:23616524 PMID:21873635 GO_REF:0000024 MGI:5490394, RGD:13792537 NCBI chr 7:18,529,823...18,594,092
Ensembl chr 7:18,529,823...18,594,091
JBrowse link
G Cry2 cryptochrome circadian regulator 2 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(MGI:5490394|PMID:23616524)
PMID:21873635
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23616524 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5490394, RGD:13792537 NCBI chr 3:78,374,995...78,405,001
Ensembl chr 3:78,374,995...78,404,965
JBrowse link
G Fbxl12 F-box and leucine-rich repeat protein 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:19,175,864...19,183,373
Ensembl chr 8:19,160,352...19,183,607
JBrowse link
G Fbxl21 F-box and leucine-rich repeat protein 21 involved_in IBA
ISO
PMID:21873635
(MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856)
RGD PMID:23452855 PMID:23452856 PMID:21873635 MGI:5470183 MGI:5487698, RGD:13792537 NCBI chr17:8,060,412...8,077,415
Ensembl chr17:8,060,414...8,073,359
JBrowse link
G Fbxl22 F-box and leucine-rich repeat protein 22 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:67,069,998...67,076,685
Ensembl chr 8:67,069,998...67,076,685
JBrowse link
G Fbxl3 F-box and leucine-rich repeat protein 3 involved_in IBA
ISO
PMID:21873635
(MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856), (MGI:5490394|PMID:23616524)
RGD PMID:23452855 PMID:23452856 PMID:23616524 PMID:21873635 MGI:5470183 MGI:5487698 MGI:5490394, RGD:13792537 NCBI chr15:79,906,795...79,926,678
Ensembl chr15:79,906,795...79,927,867
JBrowse link
G Fbxl6 F-box and leucine-rich repeat protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:108,259,097...108,262,528
Ensembl chr 7:108,257,160...108,262,513
JBrowse link
G Fbxl8 F-box and leucine-rich repeat protein 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:33,142,653...33,147,268
Ensembl chr19:33,142,715...33,147,262
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3838062|PMID:19217292)
UniProt
RGD
PMID:19217292 GO_REF:0000024 MGI:3838062 NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400
JBrowse link
G Mta1 metastasis associated 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5582861|PMID:24089055)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24089055 GO_REF:0000024 GO_REF:0000107 MGI:5582861 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641
JBrowse link
G Nr2f6 nuclear receptor subfamily 2, group F, member 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3574037 (MGI:3530176|PMID:15741322)
Ensembl
RGD
PMID:15741322 GO_REF:0000107 MGI:3530176 NCBI chr16:18,046,012...18,053,914
Ensembl chr16:18,046,013...18,053,459
JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO (MGI:5925970|PMID:26320947) RGD PMID:26320947 MGI:5925970 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 involved_in ISO (MGI:5699646|PMID:26392540), (MGI:6376341|PMID:31607531), (MGI:6378274|PMID:30240620) RGD PMID:26392540 PMID:30240620 PMID:31607531 MGI:5699646 MGI:6376341 MGI:6378274 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Pde6b phosphodiesterase 6B involved_in ISO (MGI:6378274|PMID:30240620) RGD PMID:30240620 MGI:6378274 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
JBrowse link
G Per1 period circadian regulator 1 involved_in IBA
ISO
ISS
IEA
PMID:21873635
(MGI:3578039|PMID:15888647)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:15888647 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:3578039, RGD:13792537 NCBI chr10:53,800,126...53,814,963
Ensembl chr10:53,805,535...53,814,431
JBrowse link
G Per2 period circadian regulator 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459
JBrowse link
G Per3 period circadian regulator 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:161,460,228...161,495,404
Ensembl chr 5:161,459,533...161,495,607
JBrowse link
G Pml PML nuclear body scaffold involved_in ISO (MGI:5314433|PMID:22274616) RGD PMID:22274616 MGI:5314433 NCBI chr 8:58,627,347...58,661,927
Ensembl chr 8:58,628,837...58,658,971
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024 MGI:5086036 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta involved_in ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024 MGI:5086036 NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824
JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma involved_in ISS
ISO
GO_REF:0000024
(MGI:5086036|PMID:21712997)
UniProt
RGD
PMID:21712997 GO_REF:0000024 MGI:5086036 NCBI chr12:34,383,072...34,400,553
Ensembl chr12:34,383,072...34,400,553
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in ISO (MGI:3703208|PMID:17264215) RGD PMID:17264215 MGI:3703208 NCBI chr 1:202,078,442...202,087,506
Ensembl chr 1:202,085,279...202,105,380
JBrowse link
G Rbm4b RNA binding motif protein 4B involved_in ISS
ISO
GO_REF:0000024
(MGI:3703208|PMID:17264215)
UniProt
RGD
PMID:17264215 GO_REF:0000024 MGI:3703208 NCBI chr 1:202,047,934...202,058,025
Ensembl chr 1:202,047,927...202,058,020
JBrowse link
G Sik1 salt-inducible kinase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5532783|PMID:23993098)
UniProt
RGD
PMID:23993098 GO_REF:0000024 MGI:5532783 NCBI chr20:9,949,407...9,959,036
Ensembl chr20:9,947,396...9,958,991
JBrowse link
G Tp53 tumor protein p53 involved_in ISS
ISO
GO_REF:0000024
(MGI:5613453|PMID:24051492)
UniProt
RGD
PMID:24051492 GO_REF:0000024 MGI:5613453 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Usp2 ubiquitin specific peptidase 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5607210|PMID:23213472)
UniProt
RGD
PMID:23213472 GO_REF:0000024 MGI:5607210 NCBI chr 8:44,411,457...44,439,668
Ensembl chr 8:44,411,607...44,438,331
JBrowse link
light adaption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnb5 G protein subunit beta 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598)
GO_REF:0000107
RGD
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr 8:76,076,227...76,104,151
Ensembl chr 8:76,073,306...76,105,069
JBrowse link
G Rgs9 regulator of G-protein signaling 9 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5507748|PMID:23555598)
GO_REF:0000107
RGD
Ensembl
PMID:23555598 GO_REF:0000107 MGI:5507748 NCBI chr10:94,195,265...94,270,892
Ensembl chr10:94,197,054...94,270,892
JBrowse link
long-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrp agouti related neuropeptide IEP RGD PMID:19490367 RGD:6480663 NCBI chr19:33,447,992...33,523,068
Ensembl chr19:33,447,992...33,449,584
JBrowse link
negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO
IEA
(PMID:17996703)
GO_REF:0000107
RGD
Ensembl
PMID:17996703 GO_REF:0000107 NCBI chr 8:73,384,095...73,468,951
Ensembl chr 8:73,383,695...73,468,951
JBrowse link
optokinetic behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Opn4 opsin 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5699646|PMID:26392540)
UniProt
RGD
PMID:26392540 GO_REF:0000024 MGI:5699646 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase IDA RGD PMID:12358739 RGD:628397 NCBI chr10:101,827,072...101,831,805
Ensembl chr10:101,827,301...101,831,801
JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18321474 RGD:2301031 NCBI chr 1:196,396,366...196,400,824
Ensembl chr 1:196,396,366...196,399,553
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit IEP RGD PMID:16962714 RGD:2293767 NCBI chr 6:24,297,898...24,319,157
Ensembl chr 6:24,300,956...24,320,034
JBrowse link
G Nmu neuromedin U IEP RGD PMID:17726140 RGD:1642120 NCBI chr14:31,844,564...31,872,196
Ensembl chr14:31,844,728...31,872,192
JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 IEP RGD PMID:21076970 RGD:10448986 NCBI chr10:83,728,348...83,735,562
Ensembl chr10:83,728,318...83,735,705
JBrowse link
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin, beta 1 acts_upstream_of_or_within ISO MGI:2388373 (MGI:3772638|PMID:11853756) RGD PMID:11853756 MGI:3772638 NCBI chr 1:153,837,964...153,912,111
Ensembl chr 1:153,838,078...153,904,061
JBrowse link
G Asic2 acid sensing ion channel subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3043849 (MGI:3042539|PMID:14762118)
Ensembl
RGD
PMID:14762118 GO_REF:0000107 MGI:3042539 NCBI chr10:65,870,592...66,940,577
Ensembl chr10:65,870,594...66,940,424
JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO MGI:3056615 (MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:3609280 NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO MGI:3527896 (MGI:3527312|PMID:15634774) RGD PMID:15634774 MGI:3527312 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (MGI:1928441|PMID:11095744), (MGI:3609280|PMID:16249514), (MGI:3615719|PMID:15073279), (MGI:3757777|PMID:17881533), (MGI:3772638|PMID:11853756), (MGI:3778702|PMID:18367617) RGD PMID:11095744 PMID:11853756 PMID:15073279 PMID:16249514 PMID:17881533 More... MGI:1928441 MGI:3609280 MGI:3615719 MGI:3757777 MGI:3772638 MGI:3778702 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845 (MGI:3761397|PMID:17408617), (MGI:3772743|PMID:18171936) RGD PMID:17408617 PMID:18171936 MGI:3761397 MGI:3772743 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO MGI:3783323 (MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:3778702 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252
JBrowse link
G Gpr88 G-protein coupled receptor 88 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:204,191,443...204,199,576
Ensembl chr 2:204,191,427...204,199,733
JBrowse link
G Guca1a guanylate cyclase activator 1A acts_upstream_of_or_within ISO MGI:2664159 (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) RGD PMID:11493703 PMID:15173221 MGI:2664110 MGI:3584028 NCBI chr 9:13,587,695...13,598,566
Ensembl chr 9:13,588,525...13,598,565
JBrowse link
G Guca1b guanylate cyclase activator 1B acts_upstream_of_or_within ISO MGI:2664160 (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) RGD PMID:11493703 PMID:15173221 MGI:2664110 MGI:3584028 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:151,905,096...151,925,322
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA
IBA
GO_REF:0000043
PMID:21873635
UniProt PMID:21873635 GO_REF:0000043, RGD:13792537 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Opn3 opsin 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn4 opsin 4 involved_in IDA
IBA
ISO
PMID:21873635
(MGI:2667269|PMID:12808468)
(PMID:15674244)
RGD PMID:12808468 PMID:15674244 PMID:11834834 PMID:21873635 MGI:2667269, RGD:633348, RGD:13792537 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 involved_in ISO
IBA
(MGI:6359287|PMID:30936473)
PMID:21873635
RGD PMID:30936473 PMID:21873635 MGI:6359287, RGD:13792537 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Plcb4 phospholipase C, beta 4 NAS RGD PMID:7688223 RGD:633574 NCBI chr 3:122,952,965...123,322,522
Ensembl chr 3:122,953,196...123,322,392
JBrowse link
G Rcvrn recoverin acts_upstream_of_or_within ISO MGI:3584102 (MGI:3584028|PMID:15173221) RGD PMID:15173221 MGI:3584028 NCBI chr10:52,388,706...52,396,454
Ensembl chr10:52,388,706...52,396,453
JBrowse link
G Rgr retinal G protein coupled receptor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223
JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:2181812 (MGI:3655007|PMID:16723493)
Ensembl
RGD
PMID:16723493 PMID:21873635 GO_REF:0000107 MGI:3655007, RGD:13792537 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:218,362,195...218,375,202
Ensembl chr 2:218,362,200...218,374,599
JBrowse link
G Slc24a2 solute carrier family 24 member 2 acts_upstream_of ISO (MGI:6116933|PMID:28650316) RGD PMID:28650316 MGI:6116933 NCBI chr 5:101,499,536...101,739,337
Ensembl chr 5:101,502,278...101,739,337
JBrowse link
G Slc24a4 solute carrier family 24 member 4 acts_upstream_of
involved_in
ISO
IEA
(MGI:6116933|PMID:28650316)
GO_REF:0000107
RGD
Ensembl
PMID:28650316 GO_REF:0000107 MGI:6116933 NCBI chr 6:121,278,746...121,419,811
Ensembl chr 6:121,280,031...121,414,949
JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 involved_in ISO (PMID:22043319)
(MGI:6230806|PMID:22043319)
RGD PMID:22043319 MGI:6230806 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784 (MGI:3054118|PMID:15365173) RGD PMID:15365173 MGI:3054118 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 involved_in ISO (PMID:12196552) RGD PMID:12196552 NCBI chr 1:205,567,046...205,583,001
Ensembl chr 1:205,567,220...205,582,356
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in ISO (PMID:17584859) RGD PMID:17584859 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO MGI:2657247 (MGI:3655007|PMID:16723493) RGD PMID:16723493 MGI:3655007 NCBI chr 1:235,909,473...235,965,460
Ensembl chr 1:235,909,775...235,965,315
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 involved_in ISO (PMID:12080348) RGD PMID:12080348 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784|MGI:3054793 (MGI:3054118|PMID:15365173), (MGI:3054134|PMID:15365178) RGD PMID:15365173 PMID:15365178 MGI:3054118 MGI:3054134 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15946941)
UniProt
Ensembl
RGD
PMID:15946941 GO_REF:0000024 GO_REF:0000107 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5294291|PMID:18243098)
UniProt
RGD
PMID:18243098 GO_REF:0000024 MGI:5294291 NCBI chr 8:36,420,565...36,443,477 JBrowse link
regulation of translation involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl26 ribosomal protein L26 involved_in ISO (PMID:16213212) RGD PMID:16213212 NCBI chr10:53,610,836...53,613,966
Ensembl chr10:53,610,421...53,613,966
JBrowse link
response to blue light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpt1b carnitine palmitoyltransferase 1B involved_in ISS
ISO
GO_REF:0000024
(MGI:6392469|PMID:32040503)
UniProt
RGD
PMID:32040503 GO_REF:0000024 MGI:6392469 NCBI chr 7:120,491,354...120,500,833
Ensembl chr 7:120,491,354...120,500,404
JBrowse link
G Dct dopachrome tautomerase involved_in ISO (PMID:28842328) RGD PMID:28842328 NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836
JBrowse link
G Kcnj10 potassium inwardly-rectifying channel, subfamily J, member 10 IEP RGD PMID:18450590 RGD:2326038 NCBI chr13:84,802,026...84,835,383
Ensembl chr13:84,802,009...84,835,461
JBrowse link
G Lcn2 lipocalin 2 IEP RGD PMID:30574656 RGD:126781752 NCBI chr 3:15,680,688...15,684,033
Ensembl chr 3:15,680,687...15,684,095
JBrowse link
G Opn3 opsin 3 involved_in ISO (PMID:28842328), (PMID:30168605)
(MGI:6392469|PMID:32040503)
RGD PMID:28842328 PMID:30168605 PMID:32040503 MGI:6392469 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Tyr tyrosinase involved_in ISO (PMID:28842328) RGD PMID:28842328 NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207
JBrowse link
response to high light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:17854381 RGD:8547925 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (MGI:5462166|PMID:22605914) RGD PMID:22605914 MGI:5462166 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908
JBrowse link
response to light intensity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor IEP RGD PMID:21076359 RGD:8655612 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
JBrowse link
G Cat catalase IEP RGD PMID:17514533 RGD:9107626 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478
JBrowse link
G Cntf ciliary neurotrophic factor IEP RGD PMID:21076359 RGD:8655612 NCBI chr 1:209,887,854...209,889,877
Ensembl chr 1:209,887,854...209,889,877
JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO MGI:5750095 (MGI:6503588|PMID:32889171) RGD PMID:32889171 MGI:6503588 NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:5315031|PMID:22411800) RGD PMID:22411800 MGI:5315031 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 IDA RGD PMID:11931744 RGD:1599009 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 IDA RGD PMID:17591908 RGD:2302146 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 IEP RGD PMID:18708127 RGD:9685740 NCBI chr 1:96,902,953...96,944,744
Ensembl chr 1:96,902,953...96,944,744
JBrowse link
G Kcnc2 potassium voltage-gated channel subfamily C member 2 IEP RGD PMID:18708127 RGD:9685740 NCBI chr 7:47,700,035...47,883,979
Ensembl chr 7:47,700,288...47,883,968
JBrowse link
G Mt-nd3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 IEP RGD PMID:15277468 RGD:2302310 NCBI chr MT:9,451...9,798
Ensembl chr MT:9,451...9,798
JBrowse link
response to low light intensity stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 IEP RGD PMID:1683769 RGD:2326143 NCBI chr 2:51,649,368...51,667,100
Ensembl chr 2:51,649,497...51,667,100
JBrowse link
G Prph2 peripherin 2 IEP RGD PMID:8320859 RGD:8553226 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
JBrowse link
response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brsk1 BR serine/threonine kinase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:15150265) RGD PMID:15150265 NCBI chr 1:69,134,166...69,159,947
Ensembl chr 1:69,134,565...69,160,365
JBrowse link
G Brsk2 BR serine/threonine kinase 2 involved_in ISS PMID:15150265 UniProt PMID:15150265 RGD:8554801 NCBI chr 1:197,035,522...197,088,624
Ensembl chr 1:197,035,633...197,088,092
JBrowse link
G Casp3 caspase 3 acts_upstream_of_or_within ISO MGI:109383 (MGI:3615714|PMID:16469926), (MGI:3691523|PMID:11092819) RGD PMID:11092819 PMID:16469926 MGI:3615714 MGI:3691523 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
JBrowse link
G Casp7 caspase 7 acts_upstream_of_or_within ISO MGI:107739 (MGI:3615714|PMID:16469926) RGD PMID:16469926 MGI:3615714 NCBI chr 1:255,437,195...255,476,737
Ensembl chr 1:255,437,172...255,476,729
JBrowse link
G Casp9 caspase 9 acts_upstream_of_or_within ISO MGI:2158755 (MGI:3691523|PMID:11092819) RGD PMID:11092819 MGI:3691523 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626
JBrowse link
G Cat catalase IEP RGD PMID:12592055 RGD:9179775 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478
JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in ISO (PMID:23352644) RGD PMID:23352644 NCBI chr15:45,212,797...45,228,001
Ensembl chr15:45,212,803...45,227,636
JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A acts_upstream_of_or_within ISO MGI:1933751 (MGI:2675761|PMID:12952892) RGD PMID:12952892 MGI:2675761 NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585
JBrowse link
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:15750620) RGD PMID:15750620 NCBI chr 8:19,831,874...19,834,640
Ensembl chr 8:19,831,866...19,834,674
JBrowse link
G Cirbp cold inducible RNA binding protein involved_in ISS
ISO
GO_REF:0000024
(PMID:11574538)
UniProt
RGD
PMID:11574538 GO_REF:0000024 NCBI chr 7:9,533,857...9,538,899 JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in IBA
ISO
PMID:21873635
(PMID:12732143)
RGD PMID:12732143 PMID:21873635 RGD:13792537 NCBI chr 3:77,185,114...77,207,650
Ensembl chr 3:77,185,109...77,207,631
JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in ISO (PMID:18794347) RGD PMID:18794347 NCBI chr13:103,115,810...103,155,029
Ensembl chr13:103,117,186...103,154,890
JBrowse link
G Elane elastase, neutrophil expressed involved_in ISO (PMID:11928814) RGD PMID:11928814 NCBI chr 7:9,817,251...9,819,174
Ensembl chr 7:9,817,252...9,819,100
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2183949 (MGI:3692802|PMID:17020410)
RGD PMID:17020410 PMID:21873635 MGI:3692802, RGD:13792537 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:17509950) RGD PMID:17509950 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:16678501) RGD PMID:16678501 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in
acts_upstream_of_or_within
ISO (PMID:16167068), (PMID:8710877)
MGI:3043589 (MGI:3041918|PMID:15082767)
RGD PMID:8710877 PMID:15082767 PMID:16167068 MGI:3041918 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within
ISO (PMID:16916636)
MGI:1932102 (MGI:3054497|PMID:15340056), (MGI:3655576|PMID:10843671)
RGD PMID:10843671 PMID:15340056 PMID:16916636 MGI:3054497 MGI:3655576 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in
acts_upstream_of_or_within
ISO (PMID:7664335)
MGI:2449180 (MGI:3054497|PMID:15340056)
(PMID:12732143)
RGD PMID:7664335 PMID:12732143 PMID:15340056 MGI:3054497 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859
JBrowse link
G Hus1 HUS1 checkpoint clamp component acts_upstream_of_or_within ISO MGI:1927769 (MGI:2156961|PMID:11790307), (MGI:2449744|PMID:12529385) RGD PMID:11790307 PMID:12529385 MGI:2156961 MGI:2449744 NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442
JBrowse link
G LOC100302465 hypothetical LOC100302465 involved_in ISO (MGI:5285148|PMID:20843368) RGD PMID:20843368 MGI:5285148 NCBI chr 1:189,059,744...189,293,353
Ensembl chr 1:189,059,746...189,293,435
JBrowse link
G Map2k7 mitogen activated protein kinase kinase 7 involved_in ISO
IEA
(PMID:9535930)
GO_REF:0000107
RGD
Ensembl
PMID:9535930 GO_REF:0000107 NCBI chr12:2,591,312...2,604,211
Ensembl chr12:2,591,219...2,604,222
JBrowse link
G Map4k3 mitogen-activated protein kinase kinase kinase kinase 3 involved_in ISO
ISS
IEA
(PMID:9275185)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:9275185 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:14,276,623...14,446,321
Ensembl chr 6:14,277,121...14,446,334
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:14967141)
GO_REF:0000107
RGD
Ensembl
PMID:14967141 GO_REF:0000107 NCBI chr16:8,638,897...8,721,960
Ensembl chr16:8,638,924...8,721,981
JBrowse link
G Men1 menin 1 involved_in ISO (PMID:16690369) RGD PMID:16690369 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Msh6 mutS homolog 6 acts_upstream_of_or_within ISO MGI:1858014 (MGI:2677657|PMID:14632208) RGD PMID:14632208 MGI:2677657 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Pclaf PCNA clamp associated factor involved_in ISO
ISS
(PMID:23000965)
GO_REF:0000024
RGD
UniProt
PMID:23000965 GO_REF:0000024 NCBI chr 8:66,420,673...66,432,568
Ensembl chr 8:66,420,587...66,432,994
Ensembl chr 8:66,420,587...66,432,994
JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of_or_within ISO MGI:2678372 (MGI:2675761|PMID:12952892) RGD PMID:12952892 MGI:2675761 NCBI chr18:59,986,187...59,990,174
Ensembl chr18:59,986,017...59,992,429
JBrowse link
G Pml PML nuclear body scaffold acts_upstream_of_or_within ISO MGI:104662 (MGI:3580934|PMID:15626733) RGD PMID:15626733 MGI:3580934 NCBI chr 8:58,627,347...58,661,927
Ensembl chr 8:58,628,837...58,658,971
JBrowse link
G Primpol primase and DNA directed polymerase involved_in IBA
ISO
PMID:21873635
(PMID:24240614), (PMID:24267451)
RGD PMID:24240614 PMID:24267451 PMID:21873635 RGD:13792537 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO (MGI:4822286|PMID:20647423) RGD PMID:20647423 MGI:4822286 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase acts_upstream_of_or_within ISO MGI:3835812 (MGI:2448116|PMID:12509447) RGD PMID:12509447 MGI:2448116 NCBI chr 4:145,735,654...145,821,102
Ensembl chr 4:145,735,654...145,821,069
JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in ISO (PMID:11485998) RGD PMID:11485998 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576
JBrowse link
G Ro60 Ro60, Y RNA binding protein acts_upstream_of_or_within ISO MGI:2670227 (MGI:2668758|PMID:12788971), (MGI:5524977|PMID:14680639) RGD PMID:12788971 PMID:14680639 MGI:2668758 MGI:5524977 NCBI chr13:55,499,514...55,520,504
Ensembl chr13:55,499,534...55,520,504
JBrowse link
G Rpain RPA interacting protein acts_upstream_of_or_within ISO (PMID:16135809) RGD PMID:16135809 NCBI chr10:55,692,410...55,699,910
Ensembl chr10:55,692,417...55,699,933
JBrowse link
G Sprtn SprT-like N-terminal domain involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:22681887), (PMID:22894931), (PMID:22902628)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:22681887 PMID:22894931 PMID:22902628 GO_REF:0000024 GO_REF:0000107 NCBI chr19:52,857,599...52,864,864
Ensembl chr19:52,857,866...52,864,864
JBrowse link
G Tipin timeless interacting protein acts_upstream_of_or_within ISO (MGI:3706226|PMID:17141802) RGD PMID:17141802 MGI:3706226 NCBI chr 8:64,780,741...64,801,355
Ensembl chr 8:64,780,828...64,801,352
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within IEP
ISO
MGI:1857590|MGI:1926340 (MGI:1858868|PMID:10815637), (MGI:2675761|PMID:12952892), (MGI:3032464|PMID:14744935), (MGI:3691523|PMID:11092819) RGD PMID:10815637 PMID:11092819 PMID:12952892 PMID:14744935 PMID:17724205 MGI:1858868 MGI:2675761 MGI:3032464 MGI:3691523, RGD:2290562 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Tp53i13 tumor protein p53 inducible protein 13 involved_in ISO (PMID:14767535) RGD PMID:14767535 NCBI chr10:62,356,722...62,363,122
Ensembl chr10:62,356,722...62,361,343
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (MGI:5908297|PMID:28351661) RGD PMID:28351661 MGI:5908297 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (MGI:5009403|PMID:16816390) RGD PMID:16816390 MGI:5009403 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018
JBrowse link
G Tyr tyrosinase IEP RGD PMID:6175546 RGD:8694330 NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207
JBrowse link
G Uaca uveal autoantigen with coiled-coil domains and ankyrin repeats acts_upstream_of_or_within ISO MGI:3043446 (MGI:3056865|PMID:15271982) RGD PMID:15271982 MGI:3056865 NCBI chr 8:61,259,415...61,347,789
Ensembl chr 8:61,259,477...61,347,789
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A involved_in ISO UniProtKB:P06104 (PMID:1717990) RGD PMID:1717990 NCBI chr  X:116,114,339...116,125,076
Ensembl chr  X:116,113,875...116,125,070
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B involved_in ISO UniProtKB:P06104 (PMID:1717990) RGD PMID:1717990 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
G Ube4b ubiquitination factor E4B involved_in ISO (PMID:11802788) RGD PMID:11802788 NCBI chr 5:159,766,829...159,870,509
Ensembl chr 5:159,766,829...159,870,509
JBrowse link
G Usf1 upstream transcription factor 1 involved_in ISO (MGI:3525429|PMID:15358786) RGD PMID:15358786 MGI:3525429 NCBI chr13:83,845,230...83,854,875
Ensembl chr13:83,822,035...83,854,885
JBrowse link
G Usp1 ubiquitin specific peptidase 1 involved_in ISO
ISS
(PMID:18082604)
GO_REF:0000024
RGD
UniProt
PMID:18082604 GO_REF:0000024 NCBI chr 5:113,587,564...113,598,934
Ensembl chr 5:113,587,564...113,598,932
JBrowse link
G Uvssa UV-stimulated scaffold protein A involved_in ISO
IEA
IBA
ISS
(PMID:22466610), (PMID:22466611), (PMID:22466612)
GO_REF:0000107
PMID:21873635
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22466610 PMID:22466611 PMID:22466612 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr14:77,309,188...77,351,922
Ensembl chr14:77,314,056...77,351,903
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1857939 (MGI:3655576|PMID:10843671) RGD PMID:10843671 MGI:3655576 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in ISO (PMID:22704558) RGD PMID:22704558 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670
JBrowse link
response to UV-A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in ISO (PMID:18483258) RGD PMID:18483258 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
JBrowse link
G Ccnd1 cyclin D1 involved_in ISO
ISS
(PMID:18483258)
GO_REF:0000024
RGD
UniProt
PMID:18483258 GO_REF:0000024 NCBI chr 1:200,089,002...200,098,524
Ensembl chr 1:200,089,002...200,098,602
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1858025 (MGI:1321356|PMID:9813033) RGD PMID:9813033 MGI:1321356 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
JBrowse link
G Egfr epidermal growth factor receptor involved_in ISO (PMID:18483258) RGD PMID:18483258 NCBI chr14:91,176,931...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
response to UV-B term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857430 (MGI:1330635|PMID:10200548)
Ensembl
RGD
PMID:10200548 GO_REF:0000107 MGI:1330635 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO MGI:1932102 (MGI:1859141|PMID:10850428), (MGI:3699047|PMID:17145777) RGD PMID:10850428 PMID:17145777 MGI:1859141 MGI:3699047 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO MGI:3590648 (MGI:3590574|PMID:12660172) RGD PMID:12660172 MGI:3590574 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254
JBrowse link
G Il12a interleukin 12A involved_in ISO
IEA
(PMID:8992506)
GO_REF:0000107
RGD
Ensembl
PMID:8992506 GO_REF:0000107 NCBI chr 2:152,965,769...152,973,035
Ensembl chr 2:152,965,769...152,972,734
JBrowse link
G Il12b interleukin 12B involved_in ISO (PMID:8992506) RGD PMID:8992506 NCBI chr10:28,888,832...28,903,796
Ensembl chr10:28,893,008...28,902,903
JBrowse link
G Ivl involucrin involved_in ISO (PMID:16639001) RGD PMID:16639001 NCBI chr 2:178,146,694...178,160,807
Ensembl chr 2:178,147,061...178,149,100
JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857940 (MGI:3487309|PMID:15166087)
Ensembl
RGD
PMID:15166087 GO_REF:0000107 MGI:3487309 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit involved_in ISO (PMID:15616591) RGD PMID:15616591 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
JBrowse link
G Tp53 tumor protein p53 IEP RGD PMID:22559303 RGD:8547754 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1859840 (MGI:3034118|PMID:15010313) RGD PMID:15010313 MGI:3034118 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
response to UV-C term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 IEP RGD PMID:19520675 RGD:2316118 NCBI chr20:5,100,480...5,109,669
Ensembl chr20:5,100,480...5,109,264
JBrowse link
G Bcl3 BCL3, transcription coactivator involved_in ISO (PMID:16384933) RGD PMID:16384933 NCBI chr 1:79,471,368...79,485,908
Ensembl chr 1:79,471,369...79,485,607
JBrowse link
G Brca2 BRCA2, DNA repair associated involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1930616 (MGI:1203345|PMID:9660919)
Ensembl
RGD
PMID:9660919 GO_REF:0000107 MGI:1203345 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Dcun1d3 defective in cullin neddylation 1 domain containing 3 involved_in ISO
ISS
(PMID:18823379)
GO_REF:0000024
RGD
UniProt
PMID:18823379 GO_REF:0000024 NCBI chr 1:174,243,001...174,285,647
Ensembl chr 1:66,494,848...66,496,343
Ensembl chr 1:66,494,848...66,496,343
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:17208056) RGD PMID:17208056 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (MGI:3590574|PMID:12660172) RGD PMID:12660172 MGI:3590574 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254
JBrowse link
G Map3k4 mitogen activated protein kinase kinase kinase 4 involved_in ISO (PMID:9305639) RGD PMID:9305639 NCBI chr 1:48,431,801...48,519,358
Ensembl chr 1:48,431,830...48,519,358
JBrowse link
G Polh DNA polymerase eta involved_in ISO (PMID:17563354) RGD PMID:17563354 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:17563354) RGD PMID:17563354 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (PMID:18026119)
(MGI:5009388|PMID:18026119)
RGD PMID:18026119 MGI:5009388 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO (MGI:4438311|PMID:19793992) RGD PMID:19793992 MGI:4438311 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Pcp2 Purkinje cell protein 2 acts_upstream_of_or_within ISO MGI:3579782 (MGI:3817370|PMID:18768681) RGD PMID:18768681 MGI:3817370 NCBI chr12:1,681,659...1,683,899
Ensembl chr12:1,681,659...1,683,899
JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
short-day photoperiodism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npy neuropeptide Y IEP RGD PMID:19490367 RGD:6480663 NCBI chr 4:78,881,294...78,888,495
Ensembl chr 4:78,881,264...78,888,495
JBrowse link
UV protection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cat catalase involved_in ISO (PMID:16644728), (PMID:17053817) RGD PMID:16644728 PMID:17053817 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO MGI:2158940|MGI:3050065|MGI:3692923 (MGI:1342943|PMID:10454634), (MGI:3692264|PMID:16682947), (MGI:63544|PMID:8275084) RGD PMID:8275084 PMID:10454634 PMID:16682947 MGI:1342943 MGI:3692264 MGI:63544 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (MGI:1267106|PMID:9651581)
UniProtKB:Q60452 (PMID:2835663)
RGD PMID:2835663 PMID:9651581 MGI:1267106 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO UniProtKB:A0MQ57 (MGI:50153|PMID:1747940) RGD PMID:1747940 MGI:50153 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit acts_upstream_of_or_within ISO MGI:3028660 (MGI:3027419|PMID:14729965) RGD PMID:14729965 MGI:3027419 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease acts_upstream_of_or_within ISO (MGI:77034|PMID:7510366), (MGI:82906|PMID:8703115)
UniProtKB:P35689 (PMID:7510366)
RGD PMID:7510366 PMID:8703115 MGI:77034 MGI:82906 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Gpx1 glutathione peroxidase 1 involved_in ISO
IEA
(PMID:17097614)
GO_REF:0000107
RGD
Ensembl
PMID:17097614 GO_REF:0000107 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024
JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO (PMID:22355679) RGD PMID:22355679 NCBI chr10:46,167,158...46,170,176
Ensembl chr10:46,167,217...46,170,155
JBrowse link
G Sdf4 stromal cell derived factor 4 involved_in IMP PMID:18355758 BHF-UCL PMID:18355758 RGD:8554427 NCBI chr 5:166,586,581...166,606,661
Ensembl chr 5:166,586,390...166,604,521
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in ISO (PMID:1601884) RGD PMID:1601884 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 involved_in ISO (PMID:20855601) RGD PMID:20855601 NCBI chr 3:147,282,461...147,296,110
Ensembl chr 3:147,282,624...147,296,110
JBrowse link
G Cul4b cullin 4B involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr  X:117,287,481...117,326,688
Ensembl chr  X:117,287,484...117,326,688
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in ISO
IEA
(PMID:22334663)
GO_REF:0000107
RGD
Ensembl
PMID:22334663 GO_REF:0000107 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO (PMID:22334663) RGD PMID:22334663 NCBI chr 3:77,185,114...77,207,650
Ensembl chr 3:77,185,109...77,207,631
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:20855601) RGD PMID:20855601 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Mc1r melanocortin 1 receptor involved_in ISO (PMID:18292087) RGD PMID:18292087 NCBI chr19:51,452,448...51,455,375 JBrowse link
G Sirt1 sirtuin 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:20670893)
Ensembl
RGD
PMID:20670893 GO_REF:0000107 NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in ISO (PMID:8077226)
(MGI:5427285|PMID:22431748)
RGD PMID:8077226 PMID:22431748 MGI:5427285 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
UV-damage excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpc XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1931883 (MGI:3697767|PMID:17049932) RGD PMID:17049932 MGI:3697767 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
visual behavior term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynlrb1 dynein light chain roadblock-type 1 involved_in IDA PMID:10816553 UniProt PMID:10816553 RGD:633064 NCBI chr 3:143,742,427...143,764,227
Ensembl chr 3:143,742,586...143,764,227
JBrowse link
G Slc1a2 solute carrier family 1 member 2 acts_upstream_of_or_within ISO MGI:2449707 (MGI:3608234|PMID:16197522) RGD PMID:16197522 MGI:3608234 NCBI chr 3:89,005,129...89,126,498
Ensembl chr 3:89,005,129...89,126,498
JBrowse link
visual learning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISO (MGI:5774886|PMID:27030769) RGD PMID:27030769 MGI:5774886 NCBI chr 7:9,691,452...9,711,466
Ensembl chr 7:9,691,449...9,711,425
JBrowse link
G Abcc8 ATP binding cassette subfamily C member 8 IMP RGD PMID:24114458 RGD:10003028 NCBI chr 1:96,598,663...96,679,495
Ensembl chr 1:96,598,647...96,679,510
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:96610 (MGI:5315777|PMID:22357865) RGD PMID:22357865 MGI:5315777 NCBI chr13:68,673,702...68,839,742
Ensembl chr13:68,673,722...68,839,742
JBrowse link
G Adam2 ADAM metallopeptidase domain 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3625523 (MGI:3620328|PMID:16504143)
Ensembl
RGD
PMID:16504143 GO_REF:0000107 MGI:3620328 NCBI chr15:40,242,783...40,284,025
Ensembl chr15:40,242,783...40,283,952
JBrowse link
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (MGI:1932224|PMID:11222061) RGD PMID:11222061 MGI:1932224 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919
JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 acts_upstream_of_or_within ISO MGI:5620801 (MGI:5617942|PMID:20203623) RGD PMID:20203623 MGI:5617942 NCBI chr  X:30,572,746...30,598,961
Ensembl chr  X:30,572,751...30,597,262
JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 acts_upstream_of_or_within ISO MGI:3514266 (MGI:3522016|PMID:14689444) RGD PMID:14689444 MGI:3522016 NCBI chr 1:159,896,889...159,920,505
Ensembl chr 1:159,896,880...159,920,627
JBrowse link
G App amyloid beta precursor protein involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2136847 (MGI:1344078|PMID:10338291)
UniProt
RGD
PMID:10338291 GO_REF:0000024 MGI:1344078 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 acts_upstream_of_or_within ISO MGI:2451291 (MGI:3696486|PMID:17234593) RGD PMID:17234593 MGI:3696486 NCBI chr13:84,729,597...84,754,544
Ensembl chr13:84,729,601...84,754,544
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 acts_upstream_of_or_within ISO MGI:3696954 (MGI:3696486|PMID:17234593) RGD PMID:17234593 MGI:3696486 NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918
JBrowse link
G Atxn1 ataxin 1 acts_upstream_of_or_within ISO MGI:2181805|MGI:2429435 (MGI:1270078|PMID:9651231), (MGI:4818500|PMID:20628574) RGD PMID:9651231 PMID:20628574 MGI:1270078 MGI:4818500 NCBI chr17:18,737,491...19,142,360
Ensembl chr17:18,737,533...19,142,360
JBrowse link
G B4galt2 beta-1,4-galactosyltransferase 2 acts_upstream_of_or_within ISO MGI:3849305 (MGI:3849110|PMID:19265195) RGD PMID:19265195 MGI:3849110 NCBI chr 5:131,412,541...131,422,573
Ensembl chr 5:131,412,541...131,421,013
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO MGI:3620008|MGI:3622450 (MGI:3620005|PMID:16342120) RGD PMID:16342120 MGI:3620005 NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463
JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C acts_upstream_of_or_within ISO MGI:2674114 (MGI:3607037|PMID:16251435) RGD PMID:16251435 MGI:3607037 NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648
JBrowse link
G Cacna1e calcium voltage-gated channel subunit alpha1 E acts_upstream_of_or_within ISO MGI:2179732 (MGI:1932239|PMID:11263998) RGD PMID:11263998 MGI:1932239 NCBI chr13:66,574,659...67,063,443
Ensembl chr13:66,581,920...66,894,450
JBrowse link
G Cck cholecystokinin IMP RGD PMID:12450740 RGD:1626100 NCBI chr 8:121,153,499...121,160,194
Ensembl chr 8:121,153,500...121,160,084
JBrowse link
G Cdk5 cyclin-dependent kinase 5 acts_upstream_of_or_within ISO MGI:3720892|MGI:3720937 (MGI:3720432|PMID:17529984) RGD PMID:17529984 MGI:3720432 NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112
JBrowse link
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit involved_in
acts_upstream_of_or_within
ISO (PMID:15964197)
MGI:1926253 (MGI:1332977|PMID:10064590), (MGI:3584096|PMID:12876201)
RGD PMID:10064590 PMID:12876201 PMID:15964197 MGI:1332977 MGI:3584096 NCBI chr 2:175,181,402...175,189,619
Ensembl chr 2:175,181,402...175,189,619
JBrowse link
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO MGI:2177650|MGI:5570192 (MGI:5546446|PMID:23936366) RGD PMID:23936366 MGI:5546446 NCBI chr 3:77,491,195...77,593,300
Ensembl chr 3:77,491,276...77,593,264
JBrowse link
G Creb1 cAMP responsive element binding protein 1 IMP RGD PMID:25031400 RGD:10059390 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 IMP postnatal blockade improves adult learning and memory RGD PMID:15932935 RGD:1626241 NCBI chr10:89,040,203...89,083,481
Ensembl chr10:89,040,203...89,083,481
JBrowse link
G Ctns cystinosin, lysosomal cystine transporter acts_upstream_of_or_within ISO MGI:2388945 (MGI:3848688|PMID:17977621) RGD PMID:17977621 MGI:3848688 NCBI chr10:57,801,551...57,817,213
Ensembl chr10:57,801,456...57,817,120
JBrowse link
G Dbh dopamine beta-hydroxylase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857556 (MGI:893736|PMID:9189272)
Ensembl
RGD
PMID:9189272 GO_REF:0000107 MGI:893736 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Dcdc2 doublecortin domain containing 2 acts_upstream_of_or_within ISO MGI:5288003 (MGI:5442271|PMID:21883923)
MGI:5288003 (MGI:5698331|PMID:25130614)
RGD PMID:21883923 PMID:25130614 MGI:5442271 MGI:5698331 NCBI chr17:39,845,952...40,031,781
Ensembl chr17:39,845,952...40,030,743
JBrowse link
G Ddhd2 DDHD domain containing 2 acts_upstream_of_or_within ISO MGI:5662251 (MGI:5608822|PMID:25267624) RGD PMID:25267624 MGI:5608822 NCBI chr16:66,319,469...66,349,025
Ensembl chr16:66,319,466...66,349,023
JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISO (MGI:5576037|PMID:24726472) RGD PMID:24726472 MGI:5576037 NCBI chr 1:196,401,857...196,435,541
Ensembl chr 1:196,401,857...196,435,541
JBrowse link
G Drd1 dopamine receptor D1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857158|MGI:2159306 (MGI:1274984|PMID:9692749), (MGI:3530728|PMID:15684065), (MGI:3607822|PMID:10884517), (MGI:3607825|PMID:10585522)
Ensembl
RGD
PMID:9692749 PMID:10585522 PMID:10884517 PMID:15684065 GO_REF:0000107 MGI:1274984 MGI:3530728 MGI:3607822 MGI:3607825 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO MGI:2388386 (MGI:3626135|PMID:12097513) RGD PMID:12097513 MGI:3626135 NCBI chr 8:49,708,903...49,772,888
Ensembl chr 8:49,708,927...49,772,875
JBrowse link
G Drd3 dopamine receptor D3 acts_upstream_of_or_within ISO MGI:2388387 (MGI:3626135|PMID:12097513) RGD PMID:12097513 MGI:3626135 NCBI chr11:56,879,689...56,931,901
Ensembl chr11:56,879,689...56,940,596
JBrowse link
G Drd5 dopamine receptor D5 IMP RGD PMID:17142305 RGD:1600982 NCBI chr14:72,489,347...72,490,774
Ensembl chr14:72,489,347...72,490,774
JBrowse link
G Foxb1 forkhead box B1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3589689|PMID:15654859)
UniProt
RGD
PMID:15654859 GO_REF:0000024 MGI:3589689 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781
JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 acts_upstream_of_or_within ISO MGI:1928279|MGI:1928283|MGI:1928284|MGI:2177650|MGI:2448952|MGI:3611337|MGI:97306 (MGI:1858680|PMID:10818139), (MGI:3623866|PMID:16611824), (MGI:3703316|PMID:17313573), (MGI:84850|PMID:8980238), (MGI:86085|PMID:9054942), (MGI:893741|PMID:9246451) RGD PMID:8980238 PMID:9054942 PMID:9246451 PMID:10818139 PMID:16611824 More... MGI:1858680 MGI:3623866 MGI:3703316 MGI:84850 MGI:86085 MGI:893741 NCBI chr 3:8,103,680...8,130,603
Ensembl chr 3:8,103,680...8,130,603
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1928285 (MGI:70176|PMID:7816096)
Ensembl
RGD
PMID:7816096 GO_REF:0000107 MGI:70176 NCBI chr10:5,630,684...6,043,341
Ensembl chr10:5,631,369...6,044,637
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2677899 (MGI:2676530|PMID:12972594)
Ensembl
RGD
PMID:12972594 GO_REF:0000107 MGI:2676530 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase acts_upstream_of_or_within ISO MGI:97306 (MGI:3610917|PMID:12409258) RGD PMID:12409258 MGI:3610917 NCBI chr 2:27,997,523...28,018,983
Ensembl chr 2:27,997,525...28,019,703
JBrowse link
G Hrh1 histamine receptor H 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2182945 (MGI:3703474|PMID:17145090)
Ensembl
RGD
PMID:17145090 GO_REF:0000107 MGI:3703474 NCBI chr 4:147,564,781...147,649,353
Ensembl chr 4:147,645,995...147,647,455
JBrowse link
G Hrh2 histamine receptor H 2 acts_upstream_of_or_within ISO MGI:2182949 (MGI:3703474|PMID:17145090) RGD PMID:17145090 MGI:3703474 NCBI chr17:10,368,355...10,407,791
Ensembl chr17:10,368,298...10,407,631
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:2177743 (MGI:73644|PMID:7774020) RGD PMID:7774020 MGI:73644 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (MGI:3771256|PMID:18022143) RGD PMID:18022143 MGI:3771256 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO MGI:3817268 (MGI:5139967|PMID:21734285) RGD PMID:21734285 MGI:5139967 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Itgb1 integrin subunit beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2156945|MGI:2668659|MGI:87860 (MGI:5315777|PMID:22357865)
Ensembl
RGD
PMID:22357865 GO_REF:0000107 MGI:5315777 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase IMP RGD PMID:11112797 RGD:2292520 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO MGI:3839794 (MGI:5638946|PMID:25834037) RGD PMID:25834037 MGI:5638946 NCBI chr 8:45,116,771...45,193,320
Ensembl chr 8:45,118,814...45,193,181
JBrowse link
G Kras KRAS proto-oncogene, GTPase acts_upstream_of_or_within ISO MGI:97306 (MGI:2157992|PMID:11793011) RGD PMID:11793011 MGI:2157992 NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Lrrn4 leucine rich repeat neuronal 4 acts_upstream_of_or_within ISO MGI:5428888 (MGI:5428894|PMID:15870286) RGD PMID:15870286 MGI:5428894 NCBI chr 3:120,138,093...120,150,877
Ensembl chr 3:120,139,410...120,150,831
JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2183727 (MGI:3611151|PMID:16399702)
Ensembl
RGD
PMID:16399702 GO_REF:0000107 MGI:3611151 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689
JBrowse link
G Meis2 Meis homeobox 2 acts_upstream_of_or_within ISO (MGI:5638946|PMID:25834037) RGD PMID:25834037 MGI:5638946 NCBI chr 3:102,742,905...102,944,833
Ensembl chr 3:102,742,900...102,949,696
JBrowse link
G Mtor mechanistic target of rapamycin kinase IMP RGD PMID:20599569 RGD:10041021 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
JBrowse link
G Ndrg4 NDRG family member 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:5286035|PMID:21636852)
Ensembl
RGD
PMID:21636852 GO_REF:0000107 MGI:5286035 NCBI chr19:9,351,408...9,387,398
Ensembl chr19:9,351,404...9,386,914
JBrowse link
G Neto1 neuropilin and tolloid like 1 involved_in ISO (MGI:3836361|PMID:19243221) RGD PMID:19243221 MGI:3836361 NCBI chr18:79,635,633...79,753,913
Ensembl chr18:79,635,633...79,749,030
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:2137365 (MGI:1932770|PMID:11279521)
MGI:1857478|MGI:95819|MGI:96159|MGI:96680 (MGI:2157992|PMID:11793011), (MGI:3610622|PMID:16271875), (MGI:86085|PMID:9054942)
GO_REF:0000024
Ensembl
RGD
HGNC-UCL
PMID:9054942 PMID:11279521 PMID:11793011 PMID:16271875 GO_REF:0000024 GO_REF:0000107 MGI:1932770 MGI:2157992 MGI:3610622 MGI:86085 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
JBrowse link
G Nlgn3 neuroligin 3 acts_upstream_of_or_within ISO MGI:3758949 (MGI:3758357|PMID:17823315) RGD PMID:17823315 MGI:3758357 NCBI chr  X:66,427,926...66,457,378
Ensembl chr  X:66,429,458...66,451,876
JBrowse link
G Nog noggin IMP RGD PMID:12740172 RGD:10423996 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Nps neuropeptide S acts_upstream_of_or_within ISO (MGI:3850784|PMID:19429110) RGD PMID:19429110 MGI:3850784 NCBI chr 1:190,077,040...190,080,821
Ensembl chr 1:190,077,040...190,080,821
JBrowse link
G Nptn neuroplastin IDA RGD PMID:21480899 RGD:9835376 NCBI chr 8:58,996,876...59,063,402
Ensembl chr 8:58,996,887...59,063,401
JBrowse link
G Nts neurotensin IMP RGD PMID:20219557 RGD:9743918 NCBI chr 7:37,564,944...37,574,350
Ensembl chr 7:37,564,533...37,574,423
JBrowse link
G Pde1b phosphodiesterase 1B acts_upstream_of_or_within ISO MGI:2676625|MGI:94860 (MGI:2181913|PMID:12077213), (MGI:3761427|PMID:17010100) RGD PMID:12077213 PMID:17010100 MGI:2181913 MGI:3761427 NCBI chr 7:134,627,378...134,654,581
Ensembl chr 7:134,627,322...134,654,580
JBrowse link
G Pde8b phosphodiesterase 8B acts_upstream_of_or_within ISO (MGI:5525232|PMID:22925203) RGD PMID:22925203 MGI:5525232 NCBI chr 2:26,275,117...26,479,725
Ensembl chr 2:26,276,635...26,509,209
JBrowse link
G Pias1 protein inhibitor of activated STAT, 1 IMP RGD PMID:25031400 RGD:10059390 NCBI chr 8:63,338,150...63,451,670
Ensembl chr 8:63,338,150...63,438,905
JBrowse link
G Ppp1r1b protein phosphatase 1, regulatory (inhibitor) subunit 1B acts_upstream_of_or_within ISO MGI:97523 (MGI:3761427|PMID:17010100) RGD PMID:17010100 MGI:3761427 NCBI chr10:83,347,731...83,356,775
Ensembl chr10:83,347,731...83,356,775
JBrowse link
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 IEP RGD PMID:12737936 RGD:9590120 NCBI chr 4:51,397,316...51,595,220
Ensembl chr 4:51,397,601...51,595,218
JBrowse link
G Rag1 recombination activating 1 IMP RGD PMID:22964459 RGD:12907572 NCBI chr 3:87,917,061...87,928,158
Ensembl chr 3:87,917,004...87,928,291
JBrowse link
G Rgs14 regulator of G-protein signaling 14 involved_in IMP PMID:19574389 UniProt PMID:19574389 RGD:8553361 NCBI chr17:9,248,982...9,263,104
Ensembl chr17:9,249,019...9,263,104
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3608888 (MGI:3692154|PMID:16221497)
Ensembl
RGD
PMID:16221497 GO_REF:0000107 MGI:3692154 NCBI chr 1:195,935,162...195,941,469
Ensembl chr 1:195,935,349...195,941,467
JBrowse link
G Sct secretin acts_upstream_of_or_within ISO MGI:3815315 (MGI:4939559|PMID:21159798) RGD PMID:21159798 MGI:4939559 NCBI chr 1:196,382,941...196,383,635
Ensembl chr 1:196,382,856...196,383,658
JBrowse link
G Sgk1 serum/glucocorticoid regulated kinase 1 IMP both spacial learning and enrichment-induced spatial learning facilitation RGD PMID:14656333 RGD:1642778 NCBI chr 1:22,980,257...23,098,122
Ensembl chr 1:22,980,261...23,098,283
JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:3608695 (MGI:4948153|PMID:21490221), (MGI:5562570|PMID:24548853) RGD PMID:21490221 PMID:24548853 MGI:4948153 MGI:5562570 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536
JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3580631 (MGI:3580530|PMID:12427827)
Ensembl
RGD
PMID:12427827 GO_REF:0000107 MGI:3580530 NCBI chr20:5,026,366...5,056,659
Ensembl chr20:5,026,364...5,056,672
JBrowse link
G Synpo synaptopodin involved_in ISO (MGI:2673780|PMID:12928494) RGD PMID:12928494 MGI:2673780 NCBI chr18:54,048,299...54,106,388
Ensembl chr18:54,026,152...54,102,126
JBrowse link
G Tafa2 TAFA chemokine like family member 2 involved_in ISO (MGI:6282943|PMID:30137205) RGD PMID:30137205 MGI:6282943 NCBI chr 7:58,942,598...59,418,640 JBrowse link
G Tanc1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4125076 (MGI:4845797|PMID:21068316)
Ensembl
RGD
PMID:21068316 GO_REF:0000107 MGI:4845797 NCBI chr 3:44,099,387...44,335,478
Ensembl chr 3:44,134,016...44,331,627
JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within ISO MGI:5588394 (MGI:6362140|PMID:31537781) RGD PMID:31537781 MGI:6362140 NCBI chr 8:45,112,737...45,116,345 JBrowse link
G Zzef1 zinc finger ZZ-type and EF-hand domain containing 1 acts_upstream_of_or_within ISO MGI:3796166|MGI:5474781 (MGI:6489652|PMID:33158444), (MGI:6507270|PMID:25709106) RGD PMID:25709106 PMID:33158444 MGI:6489652 MGI:6507270 NCBI chr10:57,413,265...57,550,888
Ensembl chr10:57,411,149...57,549,568
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    response to stimulus 10358
      response to abiotic stimulus 1530
        response to radiation 542
          response to light stimulus 358
            cellular response to light stimulus + 121
            cone photoresponse recovery 2
            de-etiolation 0
            detection of light stimulus + 53
            energy quenching + 0
            photoperiodism + 36
            photoprotection 0
            phototaxis + 0
            response to UV + 160
            response to blue light + 6
            response to light intensity + 22
            response to red or far red light + 1
            visual behavior + 77
paths to the root