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Gene: Rev1 (REV1, DNA directed polymerase) Rattus norvegicus

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Symbol:

Rev1

Name:

REV1, DNA directed polymerase

RGD ID:

1306715

Description:

Predicted to enable DNA-directed DNA polymerase activity and deoxycytidyl transferase activity. Predicted to be involved in error-free translesion synthesis; error-prone translesion synthesis; and response to UV. Predicted to be located in nucleus. Orthologous to human REV1 (REV1 DNA directed polymerase); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DNA repair protein REV1; LOC316344; REV1 homolog; REV1 homolog (S. cerevisiae); REV1, polymerase (DNA directed); REV1-like; REV1-like (S. cerevisiae); Rev1l

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	REV1 (REV1 DNA directed polymerase)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Rev1 (REV1, DNA directed polymerase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rev1 (REV1 DNA directed polymerase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	REV1 (REV1 DNA directed polymerase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	REV1 (REV1 DNA directed polymerase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rev1 (REV1 DNA directed polymerase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	REV1 (REV1 DNA directed polymerase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rev1 (REV1 DNA directed polymerase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLC29A2 (solute carrier family 29 member 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	REV1 (REV1 DNA directed polymerase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rev1 (REV1, DNA directed polymerase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rev1 (REV1 DNA directed polymerase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	REV1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rev1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rev-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rev1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	47,773,907 - 47,847,554 (-)	NCBI		GRCr8
mRatBN7.2	9	40,278,100 - 40,351,764 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	40,278,101 - 40,351,576 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	48,773,815 - 48,846,572 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,896,577 - 53,969,330 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	52,178,823 - 52,252,241 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	44,714,137 - 44,786,330 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	44,714,386 - 44,786,041 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	44,410,205 - 44,481,659 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,994,269 - 37,042,663 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	36,995,974 - 37,069,555 (-)	NCBI
Celera	9	38,030,447 - 38,078,175 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

5-fluorouracil (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

azoxystrobin (EXP)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

Bisphenol A diglycidyl ether (ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

chlorpyrifos (EXP)

chrysene (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclophosphamide (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

glyphosate (EXP)

guanine (ISO)

imidacloprid (EXP)

indometacin (ISO)

ketamine (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

myristicin (ISO)

ochratoxin A (EXP)

paracetamol (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

resveratrol (EXP,ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tetrachloromethane (EXP)

tetraphene (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA repair (ISO)

error-free translesion synthesis (IBA)

error-prone translesion synthesis (IBA,ISO)

response to UV (ISO)

Cellular Component

nucleus (IEA)

Molecular Function

damaged DNA binding (IEA)

deoxycytidyl transferase activity (IBA,ISO)

DNA-directed DNA polymerase activity (IBA)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11485998	PMID:11711549

Genomics

Comparative Map Data

Rev1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	47,773,907 - 47,847,554 (-)	NCBI		GRCr8
mRatBN7.2	9	40,278,100 - 40,351,764 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	40,278,101 - 40,351,576 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	48,773,815 - 48,846,572 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,896,577 - 53,969,330 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	52,178,823 - 52,252,241 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	44,714,137 - 44,786,330 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	44,714,386 - 44,786,041 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	44,410,205 - 44,481,659 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,994,269 - 37,042,663 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	36,995,974 - 37,069,555 (-)	NCBI
Celera	9	38,030,447 - 38,078,175 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

REV1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	99,400,477 - 99,490,202 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	99,400,475 - 99,490,035 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	100,016,940 - 100,106,479 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	99,383,370 - 99,472,912 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	99,475,931 - 99,564,998	NCBI
Celera	2	94,221,622 - 94,311,168 (-)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	93,782,782 - 93,847,070 (-)	NCBI		HuRef
CHM1_1	2	100,021,704 - 100,109,885 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	99,859,127 - 99,948,858 (-)	NCBI		T2T-CHM13v2.0

Rev1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	38,091,867 - 38,169,191 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	38,091,867 - 38,168,882 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	38,052,786 - 38,129,921 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	38,052,786 - 38,129,801 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	38,109,631 - 38,186,507 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	37,997,332 - 38,074,208 (-)	NCBI		MGSCv36	mm8
Celera	1	37,830,205 - 37,907,067 (-)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	16.46	NCBI

Rev1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	5,677,222 - 5,738,362 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	5,677,222 - 5,738,362 (-)	NCBI	ChiLan1.0	ChiLan1.0

REV1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	28,941,164 - 29,030,665 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	28,943,931 - 29,033,425 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	99,808,519 - 99,897,989 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	100,329,475 - 100,418,684 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	100,329,475 - 100,418,678 (-)	Ensembl	panpan1.1		panPan2

REV1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	43,150,885 - 43,247,324 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	42,586,394 - 43,247,328 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	43,074,777 - 43,171,213 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	44,020,399 - 44,116,914 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	44,020,389 - 44,116,904 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	43,733,744 - 43,830,134 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	44,016,125 - 44,112,521 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	44,198,477 - 44,294,929 (+)	NCBI		UU_Cfam_GSD_1.0

Rev1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	85,171,516 - 85,246,570 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	1,333,577 - 1,398,227 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	1,322,907 - 1,397,990 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

REV1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	3,128,824 - 3,218,894 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	3,129,529 - 3,218,866 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	170,730,018 - 170,820,108 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rev1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	4,372,256 - 4,453,431 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	4,374,345 - 4,453,374 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rev1
374 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	403
Count of miRNA genes:	236
Interacting mature miRNAs:	283
Transcripts:	ENSRNOT00000067197
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	23754024	61381613	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	23754024	58157242	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
724543	Cm20	Cardiac mass QTL 20	3.9		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	16961398	40594091	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	22133322	49968732	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat

Markers in Region

BF389054

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	40,279,215 - 40,279,349 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	44,715,252 - 44,715,385	NCBI	Rnor6.0
Rnor_5.0	9	44,411,321 - 44,411,454	UniSTS	Rnor5.0
RGSC_v3.4	9	36,995,384 - 36,995,517	UniSTS	RGSC3.4
Celera	9	38,031,562 - 38,031,695	UniSTS
RH 3.4 Map	9	371.6	UniSTS
Cytogenetic Map	9	q21	UniSTS

BF403627

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	40,399,302 - 40,399,481 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	44,834,959 - 44,835,137	NCBI	Rnor6.0
Rnor_5.0	9	44,530,584 - 44,530,762	UniSTS	Rnor5.0
RGSC_v3.4	9	37,116,258 - 37,116,436	UniSTS	RGSC3.4
Celera	9	38,151,544 - 38,151,722	UniSTS
RH 3.4 Map	9	375.8	UniSTS
Cytogenetic Map	9	q21	UniSTS

BF403788

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	40,307,125 - 40,307,276 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	44,743,162 - 44,743,312	NCBI	Rnor6.0
Rnor_5.0	9	44,439,231 - 44,439,381	UniSTS	Rnor5.0
RGSC_v3.4	9	37,023,294 - 37,023,444	UniSTS	RGSC3.4
Celera	9	38,059,472 - 38,059,622	UniSTS
RH 3.4 Map	9	379.6	UniSTS
Cytogenetic Map	9	q21	UniSTS

RH140965

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	40,402,397 - 40,402,582 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	44,838,054 - 44,838,238	NCBI	Rnor6.0
Rnor_5.0	9	44,533,679 - 44,533,863	UniSTS	Rnor5.0
RGSC_v3.4	9	37,119,353 - 37,119,537	UniSTS	RGSC3.4
Celera	9	38,154,639 - 38,154,823	UniSTS
RH 3.4 Map	9	373.3	UniSTS
Cytogenetic Map	9	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001394129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_172081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067197 ⟹ ENSRNOP00000059807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	40,278,105 - 40,351,388 (-)	Ensembl
Rnor_6.0 Ensembl	9	44,714,386 - 44,786,041 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111097 ⟹ ENSRNOP00000076682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	40,278,101 - 40,351,576 (-)	Ensembl

RefSeq Acc Id:

NM_001394129 ⟹ NP_001381058

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,847,327 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,351,520 (-)	NCBI

RefSeq Acc Id:

NR_172081

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,821,636 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,325,829 (-)	NCBI

RefSeq Acc Id:

XM_008767030 ⟹ XP_008765252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,806,596 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,310,789 (-)	NCBI
Rnor_6.0	9	44,714,138 - 44,746,988 (-)	NCBI

Sequence:

show sequence

AAGAGTCTCAACTTCACTCCTGTGTGCAAGCCTGAGGAGCCTGTACCAGGTCCAAGCGAGATAG
CCAAACAGCTCACCAACAGGGTGTAAGTGTGTACATTGGAAAGCCCACAGTATAGCCAAACAGT
TCACCAACAGGGTGTAAGTGTGTACATTGGAAAGCCAAACAGCTCACCAACAGGGTAAATCACA
TAATTAAGAAGATTGAGACAGAAAACGAAGTGAAAGCAAATGGCGTGAGCAGCTGGAATGAGGA
CAGCGCAGATGACGGTTTTAGTTCTGAGGGTCTGGGGCAGACGTTTCCAGGAAGGAAACAGAAT
GGAGTGATGCATCCCAGAGACACGGCTGTCATTTTTAATGGACATGCTCACAGTTCAAATGGTG
CCTTAAAGACGCAGGACTGCTTGGTGCCTGTGGACCACAGTGTTGCTAGCAGGCTCTCTTTAGA
TTCCACCCAGGAGGAAAAGAGGGCGGAGAAGAGCAGCACTGACTTCAGAGACTGCAGCAGGCAG
CACTTGCAGCACAGCACCACAAATGCAGATACTTTGTGCAGTCCACACAGAACTAGTTCTCTCT
CACCATCCTTGCACAGTAACACTAAAATCAATGGTGCTCACCACTCCACTGTTCAGGGGCCTTC
AAGCACAAAAAGCACTTCTGCTCTGACTCTTAGCAAAGTAGCGCCTTCAGTGCCATCCAAACCA
TCGGACTGCAGCTTCATTTCAGATTTCTATTCCCGTTCAAGACTGCATCACATCTCTACATGGA
AGTGTGAACTGACTGAGTTTGTCAGTGCCCTACAGAGACAACGTAGTGGTGTCTTTCCAGGAAG
GGAAAAGTTAAAAAAAGTGAAAACAGGCAGGTCTTCCCTTGTTGTAACTGACACAGGCGATATG
TCAGTGTTGAGCTCACCCAGACCTCAGAGCTGTGTAATGCATGTTGACATGGATTGCTTCTTTG
TATCAGTGGGTATACGAAACAGACCAGATCTCAAAGGAAAGCCAGTGGCTGTTACAAGTAACAG
AGGCACAGGAAGGGCCCCTTTACGTCCTGGGGCTAACCCACAGCTGGAGTGGCAGTATTACCAG
AATAAACTCCTGAAAGGAAAAGCAGCAGATATACCAGATTCCTCAGTATGGGAGAATCAAGATT
CTGCACAAACAAATGGAATTGATTCTGTTCTGTCAAAAGCTGAAATTGCTTCTTGTAGTTATGA
AGCCAGACAAGTTGGCATTAAGAATGGAATGTTTTTTGGACATGCTAAACAGCTGTGTCCTAAT
CTGCAGGCTGTTCCGTATGACTTCCATGCATGCAGGGAAGTTGCCCAAGCATTGTATGAAACAC
TGGCAAGCTACACACACAGCATTGAAGCTGTCAGTTGTGATGAAGCCCTGATTGACGTCACTGA
CATCCTTGCAGAGACTAAACTTTCTCCTGAGGAGTTTGCAGCTGCCCTGCGTATGGAAATCAAA
AACAAGACTCAGTGTGCTGCCTCTGTTGGGATTGGTTCTAATATTCTTCTTGCTAGAATGGCAA
CTAAAAAAGCAAAGCCGGATGGGCAGTACCACCTGCAGCCAGACGAAGTCGATGACTTCATCAG
AGGGCAGCTCGTTACCAGCCTCCCGGGAGTTGGACGTTCAATGGAATCTAAGCTAGCATCTTTG
GGAATTAAGACTTGTGGAGATTTGCAGTGTTTGACCATGGCAAAACTCCAGAAGGAATTTGGCC
CCAAGACAGGGCAGATGTTGTATAGGTTCTGCCGAGGTCTGGACGATAGACCTGTTAGAACAGA
GAAGGAACGAAAATCTGTTTCAGCCGAGATCAACTACGGAATAAGGTTCACCCAGCCCAGAGAA
GCCGAAGCCTTCCTTCTGAGTCTGTCAGGAGAGATTCAAAGCCGACTTGAAGCTGCTGGCATGA
AGGGCAAACGCCTGACTCTGAAGATCATGGTACGGAAGCCCGGGGCCCCTATAGAAACTGCAAA
ATTTGGAGGCCATGGAATTTGTGATAACATCGCCAGGACGGTAACTCTGGACCAGGCAACAGAT
AGCGCAAAAATAATTGGGAAAGCTACTCTGAACATGTTTCATACAATGAAATTAAATATTTCAG
ACATGAGAGGGGTTGGTATTCAAGTGCATCAGTTGGTTCCTGCTAATTTACATCCTTCCACGTG
TTCAAGTCGTCCATCAGCTCAGTCAAGCCTCTTCTCTGGTCTGCCACATTCTGTCCGTGATCTC
TTCCAACTTCAGAAAGCTAAGAAACCCACAGAAGAGGAGCACAATGAAGGGCTGGCTGCTGTGG
ATCTGGAAGTGTCCTCCAACTCTCGAGCTTGTGGTTTATTGTCACCCCCATCTGCACATCTGGC
TACTGTCAGTCCTGATGCTAACAGAGGCGAGTGTTCCAGGAAATGGAACGGCCTGCATTCTCCT
ATTGGTGGACAGTCAAGGTTGAACCTCAGTATAGAGGTCCCATCACCGTCCCAGATTGACCAGT
CTGTTTTAGAAGCGCTCCCACCTGATATCCGGGAACAAGTAGAACAAGCTTATGCTGCTCAACA
AGGAGAGCCGCGTGGCTCTAAGAAGAAAGAACCAGTAAATGGCTGCAGTTCAGGGGTATTGCCA
CATCCTGTTGGCACAGTTTTGTTACAAATACCAGAGCCTCAAGAACCTAATAACAGTGACACCA
GAATCAGCGTGATTGCCCTTCCAGCGTTCTCACAAGTGGACCCTGATGTCTTTGCTGCCCTTCC
TGCTGAGCTTCAGAAGGAGCTGAAAGCAGCGTATGATCAAAGACAAAGGCAGGGCGAGGATACC
ACTCAGCAGCAGCCAGCTAGTACAAGTGTGCCAAAGAATCCTTTACTTCAGCTAAAGCCACCAG
CAATGAAAGACAAGAGAAACAAGAGGAAGAACCCCATTGGTTCCCCCAGGAAGATTCAGAGTCT
GCCAGGGACCTCTGGGAGCCCTCAGAAGTTAATGGATGGTTTTCTACAACATGAAGAGAGACCC
CTGGAAGAGGTCTCCGCTTCCACCCCTGGTGCACAGAGCCTGTCTGGTCTGCAGTGCGGCAGCC
AGAGCAGCTGTTTTAGACCGGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTGATGTGAA
GACCTTGCTTAAAGAGTGGATAACTACCATCTCAGATCCAATGGAAGAAGACATCCTGCAAGTT
GTGAAATACTGCACTGACCTTATAGAGGAAAAAGATTTGGAAAAATTGGATCTTGTTATAAAAT
ACATGAAAAGGTTGATGCAGCAGTCAGTGGAGTCAGTATGGAACATGGCGTTCGACTTTATTCT
TGACAATGTTCAGGTGGTCTTACAGCAGACGTATGGAAGCACATTGAAAGTCACCTGACTGTCC
AGAGAGCCTGGTGCTCTCTGCCCAGCAGTGCTTGTGAGGTATTTGCAAAGTGCATGACAGTGAT
GCTCTGAGTTTTCATAATTCTACATTTCTTTTTAAGCAAGTGTTTTGTACATTTCTTTTTCAAA
AAAGTGCCAAATTTGTCAGTATTGCATGTAAATAATTGTGTTAATTCTTTTACTTGTAGCATAG
ATTCTATTTACAAAACGTTTGTTTATAAAGTTTTATGGATTTTTACAGTGAAGTGTTTACAGTT
GTTTAATAAAGAACTGTATGTATATTTTG

hide sequence

RefSeq Acc Id:

XM_017596444 ⟹ XP_017451933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,796,978 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,301,170 (-)	NCBI
Rnor_6.0	9	44,714,138 - 44,739,588 (-)	NCBI

Sequence:

show sequence

ATGACTTCTTTGAAGCCATAGTGCTCCCATGGATGGCCTCTGGATGTTGCTAGTGGTGTCGGTG
CTGTAGGAGGAAAAGTAGAATTAGAATAATTAGCTCTTTACAGTTGAAGGCCTTGGATGCTAAT
GACAACTAGAATCAAAGCAAAGTCTGAATCTAAACAGATGATGGGTGTATAGTCAGTGATTTCT
GGAATTGGATAATGGTGTTTTCCTGGAACTCAGTGACATATGATTTTTAAAACAGTGATGAATC
TGCTTTTACAAATTTAGATTGGGGATGAAAAGCATGATTGTTTTGTAGAAAACATTGATCTAGA
TAAGTCATTAGCCGTTTGACTTATGTCACAGGGAAGACACTGAAGTTTGTGTTCTTCAGTGTTT
TTAAGAATTTCAAGGTGGACACGGTGGTGCCTAATTCCAGCCTTGGGAGATGGCAGCAGGAGAA
TGGTGCTCTCAAGGGAAGGCTAGAAAAGAGGGGACTTTGATTCAAGGAAGGACATAGTCTCTAT
TGGAGCCAGAACCTAAACGCCAGGATTATGAGATGCCTCCTTTGAGTAAACTTGTTTCTTAGAA
GAAACCTCTTCATAGCTGTCTTGGAAAATGAGTCTCTACAATCATCAGATCTTCATGCATTTTT
ATTGCCCTGCCTTAAAGTTAGCAACTGTTTACCTAGAAAGTCTTTAACATTGGTTTCCTTGTAG
ACTGTCTTGTAAAACCACAAATGTTTTTAAAAATAATTATAGAGAAAAACATTAACCAGACAGA
AGACATATAGCACAATAGAGAGGTTCTAGTTTGGTTTTACCCCAGTTGCTTTTGTTCCTGTTTT
GTCAGATATAAAACATTGGGATTATTTTAGAAAAGACCCTCCTGATGAGGCAAACAGTCTGGAC
GTCTGGATTTCTTCTCTGTAGATAGATATGTTGGTTGTAATCATCTGCTTACCCAGTGCTTATC
TGGAAGGGTAATTGTAGACTCACATTCATTTCTCAGGTGTCCTAAGGCTTTTAATAGTTGATAC
ATGTTTTCAGAGACTTTGAGGTTTTAGTGTTTTGTGTGAGCAGATGGTGGGGTAACTTCCTGAC
CTTGCTGAGGCTTTGCTTCATGGTCTATGGTTAGTTTCCTAAGTGTACCTTTGTATATTGCTTT
TTTTCCTCTGTATTTTGTACATGGTATTATTAAAAAGATAAAACCTTTTGTTCCAGAAAGCAAG
AAATGTGTAGCTGGAGGAAGTACATAGTGCTTGTCACATGTTGAACACTAAATGAATACTTAGT
GAACAGCTGTCAAAATAAGAAAAAAATGTGTATGTTGGGTGGCTTTCCTTTGTTGCTCAGTCTG
GTGGGAAGAGTCTAAGTCAGCTGCTTGTTTGAGCAGGCTGCATCTAGATTTGACCTTGGCAGGC
ACTTGTTGTTTGAAAGTAGCAGGGAGCTGATCTTATGTTGGATCGCTTTCCATCACTGTCAGGC
CAGACATGGTTTTGCAGTAAGATATTTTCTTTGGTAACTTAATTATCATCATCTTCGTAGACAG
TGGATTTTTACACTAACAGCCTTTTATAATTCCTATCTCCTTCACTTCTGTTGGGCGGTGCACC
AGAAGCCACATGTTACAGGAGATGTTTAAGTTTCACTTGCCATTGAAAATGGACAGCACCAGAT
TTTCCTCTCCTTAGAAAAAGTGACTGCAATACCTTGATATTCTTTTTTTAACTTGAGGACATTC
ATTTTTGTCTTAAGCTCTTTGACCCATTTGGAGCTTGTAAACATACTTGCTGTACAGAAGAGGA
CTAGGTTGTCTTTTATTACGCTCACAGCCAAGCCTGTGCCCAGAACTTGTTCTCCTGTTCTTTT
GTTCCGTTTTTCCTGATCTCTCTTTCTTGGGGTCATTATTAGAGATAGTACCAAAACCCAAAAG
TGCTCATGGTCAGTTTAGAAATTAGGATCTTTGACTTCTACACACCAGCTTTATAAAAGTCATT
CTAGTATTTTGGCTTGTGTGGTTAGATGAGGCAGGATATTAGAACAACAACAACAAAAAAAAAA
ACCCATCTTTAGTCTTTTAGAAACTGATTTCTTGTTCCTTATATTCAGAACATAGGTCAGTGTA
AGCAGGGCTTCTCATCCATCCGTGACTTCCTTTGCTAGCTGTTTCCTGTATTCATCTCATTGAT
GATGTCATTCAAAGCCCTTTGACCTCTGCACTTTGTGGTTGGGGCCTTTTACCCCTTCCTGGAT
TCCCAGGATGCAGATGTTTTCTATCCCTTGGACAAACTCCAGTTTTCATTCTAAAGAGCAACAG
TTTGAAAAGTCGTATTAGCCATAGATTTATTCTCAGCGATTTCTTTTTCACAGACTTGTGTCCT
GGCCTCTGATTTCTCCAACCGTTCCTCCACATTCTCCATGTGCCCGTCTAGTTTGTCAAGTTTT
GATCAGCAGTTCTCTACCTTGCCCTCCAGTGAGGACAGTGTATCCCTGCATTTCCCTGAATCTC
ACATGAAGCAACTCACTCCGCTGGTGGAGAGACCCACGCACTCTGCTGCACTGTGGAACAGCAG
ATATACCAGATTCCTCAGTATGGGAGAATCAAGATTCTGCACAAACAAATGGAATTGATTCTGT
TCTGTCAAAAGCTGAAATTGCTTCTTGTAGTTATGAAGCCAGACAAGTTGGCATTAAGAATGGA
ATGTTTTTTGGACATGCTAAACAGCTGTGTCCTAATCTGCAGGCTGTTCCGTATGACTTCCATG
CATGCAGGGAAGTTGCCCAAGCATTGTATGAAACACTGGCAAGCTACACACACAGCATTGAAGC
TGTCAGTTGTGATGAAGCCCTGATTGACGTCACTGACATCCTTGCAGAGACTAAACTTTCTCCT
GAGGAGTTTGCAGCTGCCCTGCGTATGGAAATCAAAAACAAGACTCAGTGTGCTGCCTCTGTTG
GGATTGGTTCTAATATTCTTCTTGCTAGAATGGCAACTAAAAAAGCAAAGCCGGATGGGCAGTA
CCACCTGCAGCCAGACGAAGTCGATGACTTCATCAGAGGGCAGCTCGTTACCAGCCTCCCGGGA
GTTGGACGTTCAATGGAATCTAAGCTAGCATCTTTGGGAATTAAGACTTGTGGAGATTTGCAGT
GTTTGACCATGGCAAAACTCCAGAAGGAATTTGGCCCCAAGACAGGGCAGATGTTGTATAGGTT
CTGCCGAGGTCTGGACGATAGACCTGTTAGAACAGAGAAGGAACGAAAATCTGTTTCAGCCGAG
ATCAACTACGGAATAAGGTTCACCCAGCCCAGAGAAGCCGAAGCCTTCCTTCTGAGTCTGTCAG
GAGAGATTCAAAGCCGACTTGAAGCTGCTGGCATGAAGGGCAAACGCCTGACTCTGAAGATCAT
GGTACGGAAGCCCGGGGCCCCTATAGAAACTGCAAAATTTGGAGGCCATGGAATTTGTGATAAC
ATCGCCAGGACGGTAACTCTGGACCAGGCAACAGATAGCGCAAAAATAATTGGGAAAGCTACTC
TGAACATGTTTCATACAATGAAATTAAATATTTCAGACATGAGAGGGGTTGGTATTCAAGTGCA
TCAGTTGGTTCCTGCTAATTTACATCCTTCCACGTGTTCAAGTCGTCCATCAGCTCAGTCAAGC
CTCTTCTCTGGTCTGCCACATTCTGTCCGTGATCTCTTCCAACTTCAGAAAGCTAAGAAACCCA
CAGAAGAGGAGCACAATGAAGGGCTGGCTGCTGTGGATCTGGAAGTGTCCTCCAACTCTCGAGC
TTGTGGTTTATTGTCACCCCCATCTGCACATCTGGCTACTGTCAGTCCTGATGCTAACAGAGGC
GAGTGTTCCAGGAAATGGAACGGCCTGCATTCTCCTATTGGTGGACAGTCAAGGTTGAACCTCA
GTATAGAGGTCCCATCACCGTCCCAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACCTGATAT
CCGGGAACAAGTAGAACAAGCTTATGCTGCTCAACAAGGAGAGCCGCGTGGCTCTAAGAAGAAA
GAACCAGTAAATGGCTGCAGTTCAGGGGTATTGCCACATCCTGTTGGCACAGTTTTGTTACAAA
TACCAGAGCCTCAAGAACCTAATAACAGTGACACCAGAATCAGCGTGATTGCCCTTCCAGCGTT
CTCACAAGTGGACCCTGATGTCTTTGCTGCCCTTCCTGCTGAGCTTCAGAAGGAGCTGAAAGCA
GCGTATGATCAAAGACAAAGGCAGGGCGAGGATACCACTCAGCAGCAGCCAGCTAGTACAAGTG
TGCCAAAGAATCCTTTACTTCAGCTAAAGCCACCAGCAATGAAAGACAAGAGAAACAAGAGGAA
GAACCCCATTGGTTCCCCCAGGAAGATTCAGAGTCTGCCAGGGACCTCTGGGAGCCCTCAGAAG
TTAATGGATGGTTTTCTACAACATGAAGAGAGACCCCTGGAAGAGGTCTCCGCTTCCACCCCTG
GTGCACAGAGCCTGTCTGGTCTGCAGTGCGGCAGCCAGAGCAGCTGTTTTAGACCGGCAGCACC
CAACCTAGCTGGAGCTGTGGAATTCAGTGATGTGAAGACCTTGCTTAAAGAGTGGATAACTACC
ATCTCAGATCCAATGGAAGAAGACATCCTGCAAGTTGTGAAATACTGCACTGACCTTATAGAGG
AAAAAGATTTGGAAAAATTGGATCTTGTTATAAAATACATGAAAAGGTTGATGCAGCAGTCAGT
GGAGTCAGTATGGAACATGGCGTTCGACTTTATTCTTGACAATGTTCAGGTGGTCTTACAGCAG
ACGTATGGAAGCACATTGAAAGTCACCTGACTGTCCAGAGAGCCTGGTGCTCTCTGCCCAGCAG
TGCTTGTGAGGTATTTGCAAAGTGCATGACAGTGATGCTCTGAGTTTTCATAATTCTACATTTC
TTTTTAAGCAAGTGTTTTGTACATTTCTTTTTCAAAAAAGTGCCAAATTTGTCAGTATTGCATG
TAAATAATTGTGTTAATTCTTTTACTTGTAGCATAGATTCTATTTACAAAACGTTTGTTTATAA
AGTTTTATGGATTTTTACAGTGAAGTGTTTACAGTTGTTTAATAAAGAACTGTATGTATATTTT
G

hide sequence

RefSeq Acc Id:

XM_017596445 ⟹ XP_017451934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,796,978 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,301,170 (-)	NCBI
Rnor_6.0	9	44,714,138 - 44,739,588 (-)	NCBI

Sequence:

show sequence

ATGACTTCTTTGAAGCCATAGTGCTCCCATGGATGGCCTCTGGATGTTGCTAGTGGTGTCGGTG
CTGTAGGAGGAAAAGTAGAATTAGAATAATTAGCTCTTTACAGTTGAAGGCCTTGGATGCTAAT
GACAACTAGAATCAAAGCAAAGTCTGAATCTAAACAGATGATGGGTGTATAGTCAGTGATTTCT
GGAATTGGATAATGGTGTTTTCCTGGAACTCAGTGACATATGATTTTTAAAACAGTGATGAATC
TGCTTTTACAAATTTAGATTGGGGATGAAAAGCATGATTGTTTTGTAGAAAACATTGATCTAGA
TAAGTCATTAGCCGTTTGACTTATGTCACAGGGAAGACACTGAAGTTTGTGTTCTTCAGTGTTT
TTAAGAATTTCAAGGTGGACACGGTGGTGCCTAATTCCAGCCTTGGGAGATGGCAGCAGGAGAA
TGGTGCTCTCAAGGGAAGGCTAGAAAAGAGGGGACTTTGATTCAAGGAAGGACATAGTCTCTAT
TGGAGCCAGAACCTAAACGCCAGGATTATGAGATGCCTCCTTTGAGTAAACTTGTTTCTTAGAA
GAAACCTCTTCATAGCTGTCTTGGAAAATGAGTCTCTACAATCATCAGATCTTCATGCATTTTT
ATTGCCCTGCCTTAAAGTTAGCAACTGTTTACCTAGAAAGTCTTTAACATTGGTTTCCTTGTAG
ACTGTCTTGTAAAACCACAAATGTTTTTAAAAATAATTATAGAGAAAAACATTAACCAGACAGA
AGACATATAGCACAATAGAGAGGTTCTAGTTTGGTTTTACCCCAGTTGCTTTTGTTCCTGTTTT
GTCAGATATAAAACATTGGGATTATTTTAGAAAAGACCCTCCTGATGAGGCAAACAGTCTGGAC
GTCTGGATTTCTTCTCTGTAGATAGATATGTTGGTTGTAATCATCTGCTTACCCAGTGCTTATC
TGGAAGGGTAATTGTAGACTCACATTCATTTCTCAGGTGTCCTAAGGCTTTTAATAGTTGATAC
ATGTTTTCAGAGACTTTGAGGTTTTAGTGTTTTGTGTGAGCAGATGGTGGGGTAACTTCCTGAC
CTTGCTGAGGCTTTGCTTCATGGTCTATGGTTAGTTTCCTAAGTGTACCTTTGTATATTGCTTT
TTTTCCTCTGTATTTTGTACATGGTATTATTAAAAAGATAAAACCTTTTGTTCCAGAAAGCAAG
AAATGTGTAGCTGGAGGAAGTACATAGTGCTTGTCACATGTTGAACACTAAATGAATACTTAGT
GAACAGCTGTCAAAATAAGAAAAAAATGTGTATGTTGGGTGGCTTTCCTTTGTTGCTCAGTCTG
GTGGGAAGAGTCTAAGTCAGCTGCTTGTTTGAGCAGGCTGCATCTAGATTTGACCTTGGCAGGC
ACTTGTTGTTTGAAAGTAGCAGGGAGCTGATCTTATGTTGGATCGCTTTCCATCACTGTCAGGC
CAGACATGGTTTTGCAGTAAGATATTTTCTTTGGTAACTTAATTATCATCATCTTCGTAGACAG
TGGATTTTTACACTAACAGCCTTTTATAATTCCTATCTCCTTCACTTCTGTTGGGCGGTGCACC
AGAAGCCACATGTTACAGGAGATGTTTAAGTTTCACTTGCCATTGAAAATGGACAGCACCAGAT
TTTCCTCTCCTTAGAAAAAGTGACTGCAATACCTTGATATTCTTTTTTTAACTTGAGGACATTC
ATTTTTGTCTTAAGCTCTTTGACCCATTTGGAGCTTGTAAACATACTTGCTGTACAGAAGAGGA
CTAGGTTGTCTTTTATTACGCTCACAGCCAAGCCTGTGCCCAGAACTTGTTCTCCTGTTCTTTT
GTTCCGTTTTTCCTGATCTCTCTTTCTTGGGGTCATTATTAGAGATAGTACCAAAACCCAAAAG
TGCTCATGGTCAGTTTAGAAATTAGGATCTTTGACTTCTACACACCAGCTTTATAAAAGTCATT
CTAGTATTTTGGCTTGTGTGGTTAGATGAGGCAGGATATTAGAACAACAACAACAAAAAAAAAA
ACCCATCTTTAGTCTTTTAGAAACTGATTTCTTGTTCCTTATATTCAGAACATAGGTCAGTGTA
AGCAGGGCTTCTCATCCATCCGTGACTTCCTTTGCTAGCTGTTTCCTGTATTCATCTCATTGAT
GATGTCATTCAAAGCCCTTTGACCTCTGCACTTTGTGGTTGGGGCCTTTTACCCCTTCCTGGAT
TCCCAGGATGCAGATGTTTTCTATCCCTTGGACAAACTCCAGTTTTCATTCTAAAGAGCAACAG
TTTGAAAAGTCGTATTAGCCATAGATTTATTCTCAGCGATTTCTTTTTCACAGACTTGTGTCCT
GGCCTCTGATTTCTCCAACCGTTCCTCCACATTCTCCATGTGCCCGTCTAGTTTGTCAAGTTTT
GATCAGCAGTTCTCTACCTTGCCCTCCAGTGAGGACAGTGTATCCCTGCATTTCCCTGAATCTC
ACATGAAGCAACTCACTCCGCTGGTGGAGAGACCCACGCACTCTGCTGCACTGTGGAACAGATA
TACCAGATTCCTCAGTATGGGAGAATCAAGATTCTGCACAAACAAATGGAATTGATTCTGTTCT
GTCAAAAGCTGAAATTGCTTCTTGTAGTTATGAAGCCAGACAAGTTGGCATTAAGAATGGAATG
TTTTTTGGACATGCTAAACAGCTGTGTCCTAATCTGCAGGCTGTTCCGTATGACTTCCATGCAT
GCAGGGAAGTTGCCCAAGCATTGTATGAAACACTGGCAAGCTACACACACAGCATTGAAGCTGT
CAGTTGTGATGAAGCCCTGATTGACGTCACTGACATCCTTGCAGAGACTAAACTTTCTCCTGAG
GAGTTTGCAGCTGCCCTGCGTATGGAAATCAAAAACAAGACTCAGTGTGCTGCCTCTGTTGGGA
TTGGTTCTAATATTCTTCTTGCTAGAATGGCAACTAAAAAAGCAAAGCCGGATGGGCAGTACCA
CCTGCAGCCAGACGAAGTCGATGACTTCATCAGAGGGCAGCTCGTTACCAGCCTCCCGGGAGTT
GGACGTTCAATGGAATCTAAGCTAGCATCTTTGGGAATTAAGACTTGTGGAGATTTGCAGTGTT
TGACCATGGCAAAACTCCAGAAGGAATTTGGCCCCAAGACAGGGCAGATGTTGTATAGGTTCTG
CCGAGGTCTGGACGATAGACCTGTTAGAACAGAGAAGGAACGAAAATCTGTTTCAGCCGAGATC
AACTACGGAATAAGGTTCACCCAGCCCAGAGAAGCCGAAGCCTTCCTTCTGAGTCTGTCAGGAG
AGATTCAAAGCCGACTTGAAGCTGCTGGCATGAAGGGCAAACGCCTGACTCTGAAGATCATGGT
ACGGAAGCCCGGGGCCCCTATAGAAACTGCAAAATTTGGAGGCCATGGAATTTGTGATAACATC
GCCAGGACGGTAACTCTGGACCAGGCAACAGATAGCGCAAAAATAATTGGGAAAGCTACTCTGA
ACATGTTTCATACAATGAAATTAAATATTTCAGACATGAGAGGGGTTGGTATTCAAGTGCATCA
GTTGGTTCCTGCTAATTTACATCCTTCCACGTGTTCAAGTCGTCCATCAGCTCAGTCAAGCCTC
TTCTCTGGTCTGCCACATTCTGTCCGTGATCTCTTCCAACTTCAGAAAGCTAAGAAACCCACAG
AAGAGGAGCACAATGAAGGGCTGGCTGCTGTGGATCTGGAAGTGTCCTCCAACTCTCGAGCTTG
TGGTTTATTGTCACCCCCATCTGCACATCTGGCTACTGTCAGTCCTGATGCTAACAGAGGCGAG
TGTTCCAGGAAATGGAACGGCCTGCATTCTCCTATTGGTGGACAGTCAAGGTTGAACCTCAGTA
TAGAGGTCCCATCACCGTCCCAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACCTGATATCCG
GGAACAAGTAGAACAAGCTTATGCTGCTCAACAAGGAGAGCCGCGTGGCTCTAAGAAGAAAGAA
CCAGTAAATGGCTGCAGTTCAGGGGTATTGCCACATCCTGTTGGCACAGTTTTGTTACAAATAC
CAGAGCCTCAAGAACCTAATAACAGTGACACCAGAATCAGCGTGATTGCCCTTCCAGCGTTCTC
ACAAGTGGACCCTGATGTCTTTGCTGCCCTTCCTGCTGAGCTTCAGAAGGAGCTGAAAGCAGCG
TATGATCAAAGACAAAGGCAGGGCGAGGATACCACTCAGCAGCAGCCAGCTAGTACAAGTGTGC
CAAAGAATCCTTTACTTCAGCTAAAGCCACCAGCAATGAAAGACAAGAGAAACAAGAGGAAGAA
CCCCATTGGTTCCCCCAGGAAGATTCAGAGTCTGCCAGGGACCTCTGGGAGCCCTCAGAAGTTA
ATGGATGGTTTTCTACAACATGAAGAGAGACCCCTGGAAGAGGTCTCCGCTTCCACCCCTGGTG
CACAGAGCCTGTCTGGTCTGCAGTGCGGCAGCCAGAGCAGCTGTTTTAGACCGGCAGCACCCAA
CCTAGCTGGAGCTGTGGAATTCAGTGATGTGAAGACCTTGCTTAAAGAGTGGATAACTACCATC
TCAGATCCAATGGAAGAAGACATCCTGCAAGTTGTGAAATACTGCACTGACCTTATAGAGGAAA
AAGATTTGGAAAAATTGGATCTTGTTATAAAATACATGAAAAGGTTGATGCAGCAGTCAGTGGA
GTCAGTATGGAACATGGCGTTCGACTTTATTCTTGACAATGTTCAGGTGGTCTTACAGCAGACG
TATGGAAGCACATTGAAAGTCACCTGACTGTCCAGAGAGCCTGGTGCTCTCTGCCCAGCAGTGC
TTGTGAGGTATTTGCAAAGTGCATGACAGTGATGCTCTGAGTTTTCATAATTCTACATTTCTTT
TTAAGCAAGTGTTTTGTACATTTCTTTTTCAAAAAAGTGCCAAATTTGTCAGTATTGCATGTAA
ATAATTGTGTTAATTCTTTTACTTGTAGCATAGATTCTATTTACAAAACGTTTGTTTATAAAGT
TTTATGGATTTTTACAGTGAAGTGTTTACAGTTGTTTAATAAAGAACTGTATGTATATTTTG

hide sequence

RefSeq Acc Id:

XM_017596446 ⟹ XP_017451935

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,790,753 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,294,946 (-)	NCBI
Rnor_6.0	9	44,714,138 - 44,733,769 (-)	NCBI

Sequence:

show sequence

GCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTATTCTTAGCCATTTTATATATC
AAATATGTGTTTACTGAGTTTACTTTTATCATGAACAAAAACTGTGTTTTACTACTGCCAATTG
ATGTGGCCAAAATTTTGAAACTTACTTTACTAAGGATAGTTAAATAAAGTGGAACTGTGTTCGG
ATTGTTGGTAAGTGTATAGTATAGAGTACAGTGAATGGTAACTTGTCTACCAAGAGGCAGTTGT
GACCAGTGTCTGAGGATATCCAGATGCTAGTTGATAAAGGGAGAACTCAAGTCTTGCAGCAGTC
CTCTCCAGGGTCTTAGCCAGCATCAGCCAGCTCAAAGATGAATGCTGGGTGGAAGCCCCAGGGT
TCTGTCAGGGTTTTGTTGTTAGTTTGGTAGCACTGGGGTTACTGGCCTCTGTACTTGGGTGGTA
AGTTTGTATTGACCACAGATGGGAGCCACCAAGCAAAAGGCCAGAATAATTGGGGTGAAAGTAG
ATGAGTGCCGGATAGTATGTGGCAGATCACGTAAGTGCTAGTTAAGTAGCATGTGTTATTTCAG
GTTTGACTAAAAAGATAAATATGAATTTGAAAAGCAAAACCAAGTAAACCCACTTATGGGGAGT
TTTTTTTTTTTTCTTTAACTTTTATTGTAATATCCTATTTCCTAGAATGCTTTTCCCAGTGAAG
GTATTCAAAACAATTTCTTGTCTCCCTTTTTTCTACACAAATGCCATAGTTTCATCAGAGGCAT
ATGCCAGAGGTTGGACAGCCTAGCCCTGTGCATAAGCTTGGCAAATGCAATAGTGAAATTGTAG
AGAGTGCAGTGTGGGTAGGGTGGGTAGGTGGTAGGCGACCCTAGCCACTGCAGCGAGTGGGGAT
TACGGTGAGCTCTAAGGAATAAGTGCTGTGCGTGCTGAGACACTGCGTGTGCTGAAAAAAGGCT
AGACTTTTAACTTAAGCAACAGGCATGGTGGTACAGGGTGGTAATGCTAACAGTTCAGTACTTG
TGAGGCAAAGACAGGACTAGGAGGGGAGGACTCAGTGTCTTTTGTGCTGCACAACAAATTAAAG
GCCGTACCTCAGAGAAATATACCCCTCAGAAGTAAGAAAAGAGGCACCGTAAACCTCTCTGTTC
TACGAACGTTTTCCAGGTGTTTAATGATAGGAATCTGTGATACATAGTGTTGAATGACCGTCAG
GACTGATTTGATGCTTTTTTCTTTTTATATTGCCTAATCTAACCCCAAAGAACTTTGTCTTAAC
CAAGCCTGTGGCGGTGAGGATATGTGCTGTAGTAAAACGGGACAGGAGTCTGTTTTGTACTGCA
TACGTGAGGTAGAGCTGCAGTGACCTGCTCTGCGTGGATTTCAGTGAGGAGGGCACGGGATTGC
TCTGTTTTCTGAGAGCCACTTCAGGCCCTGTTTGTTGTTTGTTTTATGACAGGATATCGTTGTG
TAGCTCAACTGGGATGGAACTTTTTCTGTATCCCAGCCTGCCCTCAAACTCAATCTTATTTCTG
CTACCATCTAAGTGCCGCAATCCCAGCATGCATCACGCCTTCAGACTTCTTTTGTGATTTGTCC
TTACTGTCCTTTATAGTCTATGAAACATCTTAATTTCCTGAGCATCTTTCCAAGGACAATATGT
GTTTCCCTCAGTTATGGGGAAGCCTCCTGGGTGTGTGTGTTTAGTTCAGAGTTTCTTTCTACTG
TGCTCTGGCCTCACACTTCCCATGGGGATGAGGCTCAGCTGGAAGGGTGCTAATCCCGTGTACA
CAAGGCCTAGGCTATGTCCAAAACATAGCAAAGCTGGGTGTGCTTCACTAGCACTTGGGATGGC
AGCAGGTGGGTCAGAAGCTCCATCTGCAGCTGTCTGTGGAGACTTGTCTGTGGGAAGTCGCAGG
AGTAGCATTTCTCCTAAGCAAGACTGAGTTATTGGCTTTAATTTAAATGTTGAACTTAAGTATT
TTAGGAGTTTTATCACCAAAAGTTTACCCTTTTTCAAAGCTAGGCGTTATAAAAACCTCATTTC
TGATAGTATTTCTGTGCACCTGTCTCAACTATTGTATTTATACCTCCATGTATTGATAAGCACA
TTGGCTTATTAAGGCCTCCTGACTGTATTTCAAATCAGGCTGGGTAGATACCCAGCACCTTACA
CAATGCCTGATGCTGTAACTGTGCACAGCTGTCTCAGCTGCCTTTCCTGTCAGTTACTTCTCTC
CTGTCTGTCTGCTTCTTACTAGATCCTCCGAGCATTTGAGACTTGGTGCTGAAGTAATTTATCA
CTTTTATTTATATGAAAAATGCATGTAATTTTGGGTTTGCTTCTGAATAACTTGAGAGGTTTCC
TAATTCTTAGTAGTTCTCTAGTGAAGTGAGTGTTAGGAGAGTCCCAGAAGCCTCTGCATAATAA
TGGAGGACTGGCTAATCACCTGATCTTAGCAAGAGGCCAAGAAACAACCGTAACTGTTTCTTAA
GCATGCACACAGCCAACTAAGTCCATACTTGGTGAATATTACTGAATGGATGTATGGAATAACC
ATGATCATCCTATACAATATTATGTAATCTGGTGAAACATTGCTTTATTTTGCTTGTGTTTTTA
CTGTGATTATTTTTTTCTTGATTCTTTACAGAGTGATAAAATGGAATTTTACTAATTATGTATA
ATTCCATAATTGTAGTTTTATGCTGAATGCTCCAAATATCAAAGGTAATGTGGGGCATTGAGAC
ACACAGTAGATTTAAAATTTACCGTTTTCAATTAGGTCCCTCAAAGTTGTGGAACCCTGGCTCC
TGCCCAGAGTGATGTCCTACCATACAATGCTGTTGGCATCTCAGCCACTGCGGAGCCATTGAGG
AGCATTGGAATTGGTCAATTGGGAATTGGGTGACAAGTTGGCATTAAGAATGGAATGTTTTTTG
GACATGCTAAACAGCTGTGTCCTAATCTGCAGGCTGTTCCGTATGACTTCCATGCATGCAGGGA
AGTTGCCCAAGCATTGTATGAAACACTGGCAAGCTACACACACAGCATTGAAGCTGTCAGTTGT
GATGAAGCCCTGATTGACGTCACTGACATCCTTGCAGAGACTAAACTTTCTCCTGAGGAGTTTG
CAGCTGCCCTGCGTATGGAAATCAAAAACAAGACTCAGTGTGCTGCCTCTGTTGGGATTGGTTC
TAATATTCTTCTTGCTAGAATGGCAACTAAAAAAGCAAAGCCGGATGGGCAGTACCACCTGCAG
CCAGACGAAGTCGATGACTTCATCAGAGGGCAGCTCGTTACCAGCCTCCCGGGAGTTGGACGTT
CAATGGAATCTAAGCTAGCATCTTTGGGAATTAAGACTTGTGGAGATTTGCAGTGTTTGACCAT
GGCAAAACTCCAGAAGGAATTTGGCCCCAAGACAGGGCAGATGTTGTATAGGTTCTGCCGAGGT
CTGGACGATAGACCTGTTAGAACAGAGAAGGAACGAAAATCTGTTTCAGCCGAGATCAACTACG
GAATAAGGTTCACCCAGCCCAGAGAAGCCGAAGCCTTCCTTCTGAGTCTGTCAGGAGAGATTCA
AAGCCGACTTGAAGCTGCTGGCATGAAGGGCAAACGCCTGACTCTGAAGATCATGGTACGGAAG
CCCGGGGCCCCTATAGAAACTGCAAAATTTGGAGGCCATGGAATTTGTGATAACATCGCCAGGA
CGGTAACTCTGGACCAGGCAACAGATAGCGCAAAAATAATTGGGAAAGCTACTCTGAACATGTT
TCATACAATGAAATTAAATATTTCAGACATGAGAGGGGTTGGTATTCAAGTGCATCAGTTGGTT
CCTGCTAATTTACATCCTTCCACGTGTTCAAGTCGTCCATCAGCTCAGTCAAGCCTCTTCTCTG
GTCTGCCACATTCTGTCCGTGATCTCTTCCAACTTCAGAAAGCTAAGAAACCCACAGAAGAGGA
GCACAATGAAGGGCTGGCTGCTGTGGATCTGGAAGTGTCCTCCAACTCTCGAGCTTGTGGTTTA
TTGTCACCCCCATCTGCACATCTGGCTACTGTCAGTCCTGATGCTAACAGAGGCGAGTGTTCCA
GGAAATGGAACGGCCTGCATTCTCCTATTGGTGGACAGTCAAGGTTGAACCTCAGTATAGAGGT
CCCATCACCGTCCCAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACCTGATATCCGGGAACAA
GTAGAACAAGCTTATGCTGCTCAACAAGGAGAGCCGCGTGGCTCTAAGAAGAAAGAACCAGTAA
ATGGCTGCAGTTCAGGGGTATTGCCACATCCTGTTGGCACAGTTTTGTTACAAATACCAGAGCC
TCAAGAACCTAATAACAGTGACACCAGAATCAGCGTGATTGCCCTTCCAGCGTTCTCACAAGTG
GACCCTGATGTCTTTGCTGCCCTTCCTGCTGAGCTTCAGAAGGAGCTGAAAGCAGCGTATGATC
AAAGACAAAGGCAGGGCGAGGATACCACTCAGCAGCAGCCAGCTAGTACAAGTGTGCCAAAGAA
TCCTTTACTTCAGCTAAAGCCACCAGCAATGAAAGACAAGAGAAACAAGAGGAAGAACCCCATT
GGTTCCCCCAGGAAGATTCAGAGTCTGCCAGGGACCTCTGGGAGCCCTCAGAAGTTAATGGATG
GTTTTCTACAACATGAAGAGAGACCCCTGGAAGAGGTCTCCGCTTCCACCCCTGGTGCACAGAG
CCTGTCTGGTCTGCAGTGCGGCAGCCAGAGCAGCTGTTTTAGACCGGCAGCACCCAACCTAGCT
GGAGCTGTGGAATTCAGTGATGTGAAGACCTTGCTTAAAGAGTGGATAACTACCATCTCAGATC
CAATGGAAGAAGACATCCTGCAAGTTGTGAAATACTGCACTGACCTTATAGAGGAAAAAGATTT
GGAAAAATTGGATCTTGTTATAAAATACATGAAAAGGTTGATGCAGCAGTCAGTGGAGTCAGTA
TGGAACATGGCGTTCGACTTTATTCTTGACAATGTTCAGGTGGTCTTACAGCAGACGTATGGAA
GCACATTGAAAGTCACCTGACTGTCCAGAGAGCCTGGTGCTCTCTGCCCAGCAGTGCTTGTGAG
GTATTTGCAAAGTGCATGACAGTGATGCTCTGAGTTTTCATAATTCTACATTTCTTTTTAAGCA
AGTGTTTTGTACATTTCTTTTTCAAAAAAGTGCCAAATTTGTCAGTATTGCATGTAAATAATTG
TGTTAATTCTTTTACTTGTAGCATAGATTCTATTTACAAAACGTTTGTTTATAAAGTTTTATGG
ATTTTTACAGTGAAGTGTTTACAGTTGTTTAATAAAGAACTGTATGTATATTTTG

hide sequence

RefSeq Acc Id:

XM_039083576 ⟹ XP_038939504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,847,191 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,351,453 (-)	NCBI

RefSeq Acc Id:

XM_039083577 ⟹ XP_038939505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,847,554 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,351,764 (-)	NCBI

RefSeq Acc Id:

XM_039083578 ⟹ XP_038939506

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,847,463 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,351,764 (-)	NCBI

RefSeq Acc Id:

XM_039083579 ⟹ XP_038939507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,845,827 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,350,020 (-)	NCBI

RefSeq Acc Id:

XM_039083580 ⟹ XP_038939508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,845,214 (-)	NCBI
mRatBN7.2	9	40,278,100 - 40,349,407 (-)	NCBI

RefSeq Acc Id:

XM_063267158 ⟹ XP_063123228

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,845,927 (-)	NCBI

RefSeq Acc Id:

XM_063267159 ⟹ XP_063123229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,847,187 (-)	NCBI

RefSeq Acc Id:

XM_063267160 ⟹ XP_063123230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,847,187 (-)	NCBI

RefSeq Acc Id:

XM_063267161 ⟹ XP_063123231

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,773,907 - 47,847,463 (-)	NCBI

RefSeq Acc Id:

XR_010054595

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,778,309 - 47,847,187 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001381058	(Get FASTA)	NCBI Sequence Viewer
	XP_008765252	(Get FASTA)	NCBI Sequence Viewer
	XP_017451933	(Get FASTA)	NCBI Sequence Viewer
	XP_017451934	(Get FASTA)	NCBI Sequence Viewer
	XP_017451935	(Get FASTA)	NCBI Sequence Viewer
	XP_038939504	(Get FASTA)	NCBI Sequence Viewer
	XP_038939505	(Get FASTA)	NCBI Sequence Viewer
	XP_038939506	(Get FASTA)	NCBI Sequence Viewer
	XP_038939507	(Get FASTA)	NCBI Sequence Viewer
	XP_038939508	(Get FASTA)	NCBI Sequence Viewer
	XP_063123228	(Get FASTA)	NCBI Sequence Viewer
	XP_063123229	(Get FASTA)	NCBI Sequence Viewer
	XP_063123230	(Get FASTA)	NCBI Sequence Viewer
	XP_063123231	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL99214	(Get FASTA)	NCBI Sequence Viewer
	EDL99215	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059807.2
	ENSRNOP00000076682.1

RefSeq Acc Id:	XP_008765252 ⟸ XM_008767030
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZJ91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHPRDTAVIFNGHAHSSNGALKTQDCLVPVDHSVASRLSLDSTQEEKRAEKSSTDFRDCSRQHL QHSTTNADTLCSPHRTSSLSPSLHSNTKINGAHHSTVQGPSSTKSTSALTLSKVAPSVPSKPSD CSFISDFYSRSRLHHISTWKCELTEFVSALQRQRSGVFPGREKLKKVKTGRSSLVVTDTGDMSV LSSPRPQSCVMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNK LLKGKAADIPDSSVWENQDSAQTNGIDSVLSKAEIASCSYEARQVGIKNGMFFGHAKQLCPNLQ AVPYDFHACREVAQALYETLASYTHSIEAVSCDEALIDVTDILAETKLSPEEFAAALRMEIKNK TQCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTSLPGVGRSMESKLASLGI KTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPREAE AFLLSLSGEIQSRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICDNIARTVTLDQATDSA KIIGKATLNMFHTMKLNISDMRGVGIQVHQLVPANLHPSTCSSRPSAQSSLFSGLPHSVRDLFQ LQKAKKPTEEEHNEGLAAVDLEVSSNSRACGLLSPPSAHLATVSPDANRGECSRKWNGLHSPIG GQSRLNLSIEVPSPSQIDQSVLEALPPDIREQVEQAYAAQQGEPRGSKKKEPVNGCSSGVLPHP VGTVLLQIPEPQEPNNSDTRISVIALPAFSQVDPDVFAALPAELQKELKAAYDQRQRQGEDTTQ QQPASTSVPKNPLLQLKPPAMKDKRNKRKNPIGSPRKIQSLPGTSGSPQKLMDGFLQHEERPLE EVSASTPGAQSLSGLQCGSQSSCFRPAAPNLAGAVEFSDVKTLLKEWITTISDPMEEDILQVVK YCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT hide sequence

RefSeq Acc Id:

XP_017451934 ⟸ XM_017596445

- Peptide Label:

isoform X6

- Sequence:

show sequence

MFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALIDVTDILAETKLSP
EEFAAALRMEIKNKTQCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTSLPG
VGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAE
INYGIRFTQPREAEAFLLSLSGEIQSRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICDN
IARTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRGVGIQVHQLVPANLHPSTCSSRPSAQSS
LFSGLPHSVRDLFQLQKAKKPTEEEHNEGLAAVDLEVSSNSRACGLLSPPSAHLATVSPDANRG
ECSRKWNGLHSPIGGQSRLNLSIEVPSPSQIDQSVLEALPPDIREQVEQAYAAQQGEPRGSKKK
EPVNGCSSGVLPHPVGTVLLQIPEPQEPNNSDTRISVIALPAFSQVDPDVFAALPAELQKELKA
AYDQRQRQGEDTTQQQPASTSVPKNPLLQLKPPAMKDKRNKRKNPIGSPRKIQSLPGTSGSPQK
LMDGFLQHEERPLEEVSASTPGAQSLSGLQCGSQSSCFRPAAPNLAGAVEFSDVKTLLKEWITT
ISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ
TYGSTLKVT

hide sequence

RefSeq Acc Id:

XP_017451933 ⟸ XM_017596444

- Peptide Label:

isoform X6

- Sequence:

show sequence

MFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALIDVTDILAETKLSP
EEFAAALRMEIKNKTQCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTSLPG
VGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAE
INYGIRFTQPREAEAFLLSLSGEIQSRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICDN
IARTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRGVGIQVHQLVPANLHPSTCSSRPSAQSS
LFSGLPHSVRDLFQLQKAKKPTEEEHNEGLAAVDLEVSSNSRACGLLSPPSAHLATVSPDANRG
ECSRKWNGLHSPIGGQSRLNLSIEVPSPSQIDQSVLEALPPDIREQVEQAYAAQQGEPRGSKKK
EPVNGCSSGVLPHPVGTVLLQIPEPQEPNNSDTRISVIALPAFSQVDPDVFAALPAELQKELKA
AYDQRQRQGEDTTQQQPASTSVPKNPLLQLKPPAMKDKRNKRKNPIGSPRKIQSLPGTSGSPQK
LMDGFLQHEERPLEEVSASTPGAQSLSGLQCGSQSSCFRPAAPNLAGAVEFSDVKTLLKEWITT
ISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ
TYGSTLKVT

hide sequence

RefSeq Acc Id:

XP_017451935 ⟸ XM_017596446

- Peptide Label:

isoform X6

- Sequence:

show sequence

MFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALIDVTDILAETKLSP
EEFAAALRMEIKNKTQCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTSLPG
VGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAE
INYGIRFTQPREAEAFLLSLSGEIQSRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICDN
IARTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRGVGIQVHQLVPANLHPSTCSSRPSAQSS
LFSGLPHSVRDLFQLQKAKKPTEEEHNEGLAAVDLEVSSNSRACGLLSPPSAHLATVSPDANRG
ECSRKWNGLHSPIGGQSRLNLSIEVPSPSQIDQSVLEALPPDIREQVEQAYAAQQGEPRGSKKK
EPVNGCSSGVLPHPVGTVLLQIPEPQEPNNSDTRISVIALPAFSQVDPDVFAALPAELQKELKA
AYDQRQRQGEDTTQQQPASTSVPKNPLLQLKPPAMKDKRNKRKNPIGSPRKIQSLPGTSGSPQK
LMDGFLQHEERPLEEVSASTPGAQSLSGLQCGSQSSCFRPAAPNLAGAVEFSDVKTLLKEWITT
ISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ
TYGSTLKVT

hide sequence

Ensembl Acc Id:

ENSRNOP00000059807 ⟸ ENSRNOT00000067197

RefSeq Acc Id:	XP_038939506 ⟸ XM_039083578
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRU9 (UniProtKB/TrEMBL), A0A8I5ZJ91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939505 ⟸ XM_039083577
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRU9 (UniProtKB/TrEMBL), A0A8I5ZJ91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939504 ⟸ XM_039083576
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRU9 (UniProtKB/TrEMBL), A0A8I5ZJ91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939507 ⟸ XM_039083579
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRU9 (UniProtKB/TrEMBL), A0A8I5ZJ91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939508 ⟸ XM_039083580
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRU9 (UniProtKB/TrEMBL), A0A8I5ZJ91 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000076682 ⟸ ENSRNOT00000111097

RefSeq Acc Id:	NP_001381058 ⟸ NM_001394129
- UniProtKB:	D3ZRU9 (UniProtKB/TrEMBL), A0A8I5ZJ91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123231 ⟸ XM_063267161
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZJ91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123230 ⟸ XM_063267160
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZJ91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123229 ⟸ XM_063267159
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZJ91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123228 ⟸ XM_063267158
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRU9 (UniProtKB/TrEMBL), A0A8I5ZJ91 (UniProtKB/TrEMBL)

Protein Domains

BRCT UmuC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZRU9-F1-model_v2	AlphaFold	D3ZRU9	1-1234	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306715	AgrOrtholog
BioCyc Gene	G2FUF-27771	BioCyc
Ensembl Genes	ENSRNOG00000018623	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067197.3	UniProtKB/TrEMBL
	ENSRNOT00000111097.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.1280	UniProtKB/TrEMBL
	3.30.1490.100	UniProtKB/TrEMBL
	3.30.70.270	UniProtKB/TrEMBL
	3.40.1170.60	UniProtKB/TrEMBL
	3.40.50.10190	UniProtKB/TrEMBL
	5' to 3' exonuclease, C-terminal subdomain	UniProtKB/TrEMBL
	6.10.250.1490	UniProtKB/TrEMBL
	6.10.250.1630	UniProtKB/TrEMBL
InterPro	BRCT	UniProtKB/TrEMBL
	BRCT_dom_sf	UniProtKB/TrEMBL
	DNA/RNA_pol_sf	UniProtKB/TrEMBL
	DNA_pol_Y-fam_lit_finger_sf	UniProtKB/TrEMBL
	DNA_pol_Y-fam_little_finger	UniProtKB/TrEMBL
	DNA_repair_prot_UmuC-like	UniProtKB/TrEMBL
	DUF4414	UniProtKB/TrEMBL
	IMS_HHH_1	UniProtKB/TrEMBL
	REV1	UniProtKB/TrEMBL
	Rev1_C	UniProtKB/TrEMBL
	Rev1_C_sf	UniProtKB/TrEMBL
	Rev1_UBM1/2	UniProtKB/TrEMBL
	Rev_trsase/Diguanyl_cyclase	UniProtKB/TrEMBL
NCBI Gene	316344	ENTREZGENE
PANTHER	DNA REPAIR PROTEIN REV1	UniProtKB/TrEMBL
	DNA REPAIR PROTEIN REV1	UniProtKB/TrEMBL
Pfam	BRCT	UniProtKB/TrEMBL
	DUF4414	UniProtKB/TrEMBL
	IMS	UniProtKB/TrEMBL
	IMS_C	UniProtKB/TrEMBL
	IMS_HHH_1	UniProtKB/TrEMBL
	REV1_C	UniProtKB/TrEMBL
PhenoGen	Rev1	PhenoGen
PIRSF	REV1	UniProtKB/TrEMBL
PROSITE	BRCT	UniProtKB/TrEMBL
	UMUC	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018623	RatGTEx
SMART	BRCT	UniProtKB/TrEMBL
Superfamily-SCOP	BRCT	UniProtKB/TrEMBL
	DNA_pol_Y-fam_little_finger	UniProtKB/TrEMBL
	SSF56672	UniProtKB/TrEMBL
UniProt	A0A8I5ZJ91	ENTREZGENE, UniProtKB/TrEMBL
	A6INJ5_RAT	UniProtKB/TrEMBL
	A6INJ6_RAT	UniProtKB/TrEMBL
	D3ZRU9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-13	Rev1	REV1, DNA directed polymerase	Rev1	REV1, polymerase (DNA directed)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-10	Rev1	REV1, polymerase (DNA directed)	Rev1	REV1 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Rev1	REV1 homolog (S. cerevisiae)	Rev1l_predicted	REV1-like (S. cerevisiae) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Rev1l_predicted	REV1-like (S. cerevisiae) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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