 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
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Gene Annotator (Functional Annotation) |
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Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
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 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
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 MOET (Multi-Ontology Enrichement) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | GOA data from the GO Consortium |
| 3. | MGD data from the GO Consortium |
| 4. | RGD automated data pipeline |
| 5. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Rev1 (Rattus norvegicus - Norway rat) |
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| REV1 (Homo sapiens - human) |
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| Rev1 (Mus musculus - house mouse) |
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| Rev1 (Chinchilla lanigera - long-tailed chinchilla) |
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| REV1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| REV1 (Canis lupus familiaris - dog) |
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| Rev1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| REV1 (Sus scrofa - pig) |
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Position Markers| BF389054 |
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| BF403627 |
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| BF403788 |
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| RH140965 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 22 | 30 | 23 | 15 | 4 | 2 | 3 | 8 | 26 | 25 | 11 | 11 | 26 | 35 | 8 | 8 |
| Low | 13 | 1 | 15 | |||||||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001108213 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006244819 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006244820 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006244821 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008767030 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017596443 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017596444 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017596445 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017596446 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07067427 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01059462 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473965 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_001108213 ⟹ NP_001101683 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
AGAAGCTCCACCATGAGGCGAGGTGGATGGAGGAAGCGAGCAGAGGAGGATGGCTGGGAAAAAThide sequence |
| RefSeq Acc Id: | XM_006244819 ⟹ XP_006244881 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CGCACCGCGCCGCCCCTGCGCCTCGGGCCGCCGGGTTATGTAACGCGTGACCTCCCGTTCCCCChide sequence |
| RefSeq Acc Id: | XM_006244820 ⟹ XP_006244882 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CTCCGAAAAAAAGAAAAGAAAAAAAAATTAACACTCATAATATAGCTACATTGTGTGCTTTCTThide sequence |
| RefSeq Acc Id: | XM_006244821 ⟹ XP_006244883 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
AAAAAACCATAAATTATGTTTTTTAAAATAAAAATGCCAGATCTATTAATTTGTTGTCATGATAhide sequence |
| RefSeq Acc Id: | XM_008767030 ⟹ XP_008765252 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
AAGAGTCTCAACTTCACTCCTGTGTGCAAGCCTGAGGAGCCTGTACCAGGTCCAAGCGAGATAGhide sequence |
| RefSeq Acc Id: | XM_017596443 ⟹ XP_017451932 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTGAACTGTATAAATATAACATTTTATATTCCATGCCTAATCTCCTGTGAGAATGAAGTTGATThide sequence |
| RefSeq Acc Id: | XM_017596444 ⟹ XP_017451933 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
ATGACTTCTTTGAAGCCATAGTGCTCCCATGGATGGCCTCTGGATGTTGCTAGTGGTGTCGGTGhide sequence |
| RefSeq Acc Id: | XM_017596445 ⟹ XP_017451934 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
ATGACTTCTTTGAAGCCATAGTGCTCCCATGGATGGCCTCTGGATGTTGCTAGTGGTGTCGGTGhide sequence |
| RefSeq Acc Id: | XM_017596446 ⟹ XP_017451935 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTATTCTTAGCCATTTTATATATChide sequence |
Protein Sequences| Protein RefSeqs | NP_001101683 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006244881 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006244882 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006244883 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008765252 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451932 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451933 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451934 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017451935 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | EDL99214 | (Get FASTA) | NCBI Sequence Viewer |
| EDL99215 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001101683 ⟸ NM_001108213 |
| - Sequence: |
MRRGGWRKRAEEDGWEKWGGYMAAKVQKLEEQFRSDAAKQKDGTASAIFSGVAIYVNGYTDPSAhide sequence |
| RefSeq Acc Id: | XP_006244881 ⟸ XM_006244819 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | D3ZRU9 (UniProtKB/TrEMBL) |
| - Sequence: |
MRRGGWRKRAEEDGWEKWGGYMAAKVQKLEEQFRSDAAKQKDGTASAIFSGVAIYVNGYTDPSAhide sequence |
| RefSeq Acc Id: | XP_006244882 ⟸ XM_006244820 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | D3ZRU9 (UniProtKB/TrEMBL) |
| - Sequence: |
MRRGGWRKRAEEDGWEKWGGYMAAKVQKLEEQFRSDAAKQKDGTASAIFSGVAIYVNGYTDPSAhide sequence |
| RefSeq Acc Id: | XP_006244883 ⟸ XM_006244821 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MRRGGWRKRAEEDGWEKWGGYMAAKVQKLEEQFRSDAAKQKDGTASAIFSGVAIYVNGYTDPSAhide sequence |
| RefSeq Acc Id: | XP_008765252 ⟸ XM_008767030 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MHPRDTAVIFNGHAHSSNGALKTQDCLVPVDHSVASRLSLDSTQEEKRAEKSSTDFRDCSRQHLhide sequence |
| RefSeq Acc Id: | XP_017451932 ⟸ XM_017596443 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MRRISLGLNVIFFLLGDMSVLSSPRPQSCVMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGhide sequence |
| RefSeq Acc Id: | XP_017451934 ⟸ XM_017596445 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALIDVTDILAETKLSPhide sequence |
| RefSeq Acc Id: | XP_017451933 ⟸ XM_017596444 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALIDVTDILAETKLSPhide sequence |
| RefSeq Acc Id: | XP_017451935 ⟸ XM_017596446 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALIDVTDILAETKLSPhide sequence |
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Damaging VariantsAssembly: Rnor_5.0
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 9 | 44411288 | 44411289 | T | A | snv | IS-Tlk/Kyo (KyushuU), IS/Kyo (KyushuU) |
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1306715 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000018623 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000059807 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000067197 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 1.20.58.1280 | UniProtKB/TrEMBL |
| 3.30.1490.100 | UniProtKB/TrEMBL | |
| 3.40.50.10190 | UniProtKB/TrEMBL | |
| InterPro | BRCT | UniProtKB/TrEMBL |
| BRCT_dom_sf | UniProtKB/TrEMBL | |
| DNA_pol_Y-fam_lit_finger_sf | UniProtKB/TrEMBL | |
| DNA_pol_Y-fam_little_finger | UniProtKB/TrEMBL | |
| DNA_repair_prot_UmuC-like | UniProtKB/TrEMBL | |
| DUF4414 | UniProtKB/TrEMBL | |
| REV1 | UniProtKB/TrEMBL | |
| Rev1_C | UniProtKB/TrEMBL | |
| Rev1_C_sf | UniProtKB/TrEMBL | |
| NCBI Gene | 316344 | ENTREZGENE |
| Pfam | BRCT_2 | UniProtKB/TrEMBL |
| DUF4414 | UniProtKB/TrEMBL | |
| IMS | UniProtKB/TrEMBL | |
| IMS_C | UniProtKB/TrEMBL | |
| REV1_C | UniProtKB/TrEMBL | |
| PhenoGen | Rev1 | PhenoGen |
| PIRSF | REV1 | UniProtKB/TrEMBL |
| PROSITE | BRCT | UniProtKB/TrEMBL |
| UMUC | UniProtKB/TrEMBL | |
| SMART | BRCT | UniProtKB/TrEMBL |
| Superfamily-SCOP | BRCT | UniProtKB/TrEMBL |
| DNA_pol_Y-fam_little_finger | UniProtKB/TrEMBL | |
| UniGene | Rn.94641 | ENTREZGENE |
| UniProt | D3ZRU9 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2015-11-13 | Rev1 | REV1, DNA directed polymerase | Rev1 | REV1, polymerase (DNA directed) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2012-10-10 | Rev1 | REV1, polymerase (DNA directed) | Rev1 | REV1 homolog (S. cerevisiae) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-03-04 | Rev1 | REV1 homolog (S. cerevisiae) | Rev1l_predicted | REV1-like (S. cerevisiae) (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2005-01-12 | Rev1l_predicted | REV1-like (S. cerevisiae) (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Rev1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1306715 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
