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ONTOLOGY REPORT - ANNOTATIONS

Term:phototransduction, visible light
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Accession:GO:0007603 term browser browse the term
Definition:The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
Synonyms:exact_synonym: visual cascade;   visual transduction


show annotations for term's descendants           Sort by:
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784 (PMID:15365173) RGD PMID:15365173 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922 		JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 involved_in ISO (PMID:12196552) RGD PMID:12196552 NCBI chr 1:205,567,226...205,583,001
Ensembl chr 1:205,567,220...205,582,356 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in ISO
IBA		 (PMID:17584859)
GO_REF:0000033		 RGD
GO_Central		 PMID:17584859 GO_REF:0000033 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO MGI:2657247 (PMID:16723493) RGD PMID:16723493 NCBI chr 1:235,909,583...235,965,435
Ensembl chr 1:235,909,775...235,965,315 		JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784|MGI:3054793 (PMID:15365173), (PMID:15365178) RGD PMID:15365173 PMID:15365178 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:15946941)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15946941 GO_REF:0000024 GO_REF:0000107 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
G Pcp2 Purkinje cell protein 2 acts_upstream_of_or_within ISO MGI:3579782 (PMID:18768681) RGD PMID:18768681 NCBI chr12:1,681,659...1,683,899
Ensembl chr12:1,681,659...1,683,899 		JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19694
    cellular process 18196
      signal transduction 7018
        phototransduction 26
          phototransduction, visible light 7
            rhodopsin mediated signaling pathway + 5
Path 2
Term Annotations click to browse term
  biological_process 19694
    response to stimulus 10517
      response to abiotic stimulus 1578
        response to radiation 522
          response to light stimulus 368
            detection of light stimulus 50
              detection of visible light 38
                phototransduction, visible light 7
                  rhodopsin mediated signaling pathway + 5
paths to the root