ONTOLOGY REPORT - ANNOTATIONS |
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Term: | phototransduction |
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Accession: | GO:0007602
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browse the term
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Definition: | The sequence of reactions within a cell required to convert absorbed photons into a molecular signal. |
Synonyms: | narrow_synonym: | phototransduction, visible light, light adaptation; phototrophin mediated phototransduction |
| related_synonym: | opsin |
| xref: | Wikipedia:Visual_phototransduction |
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Arrb1 |
arrestin, beta 1 |
acts_upstream_of_or_within |
ISO |
MGI:2388373 (MGI:3772638|PMID:11853756) |
RGD |
PMID:11853756 |
MGI:3772638 |
NCBI chr 1:153,837,964...153,912,111
Ensembl chr 1:153,838,078...153,904,061
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Asic2 |
acid sensing ion channel subunit 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:3043849 (MGI:3042539|PMID:14762118) |
Ensembl RGD |
PMID:14762118 |
GO_REF:0000107 MGI:3042539 |
NCBI chr10:65,870,592...66,940,577
Ensembl chr10:65,870,594...66,940,424
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Cabp4 |
calcium binding protein 4 |
acts_upstream_of_or_within |
ISO |
MGI:3056615 (MGI:3609280|PMID:16249514) |
RGD |
PMID:16249514 |
MGI:3609280 |
NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172
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Cngb1 |
cyclic nucleotide gated channel subunit beta 1 |
acts_upstream_of_or_within |
ISO |
MGI:3527896 (MGI:3527312|PMID:15634774) |
RGD |
PMID:15634774 |
MGI:3527312 |
NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
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Gnat1 |
G protein subunit alpha transducin 1 |
acts_upstream_of_or_within |
ISO |
MGI:2152779 (MGI:1928441|PMID:11095744), (MGI:3609280|PMID:16249514), (MGI:3615719|PMID:15073279), (MGI:3757777|PMID:17881533), (MGI:3772638|PMID:11853756), (MGI:3778702|PMID:18367617) |
RGD |
PMID:11095744 PMID:11853756 PMID:15073279 PMID:16249514 PMID:17881533 PMID:18367617 More...
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MGI:1928441 MGI:3609280 MGI:3615719 MGI:3757777 MGI:3772638 MGI:3778702 |
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
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Gnat2 |
G protein subunit alpha transducin 2 |
acts_upstream_of_or_within |
ISO |
MGI:3588845 (MGI:3761397|PMID:17408617), (MGI:3772743|PMID:18171936) |
RGD |
PMID:17408617 PMID:18171936 |
MGI:3761397 MGI:3772743 |
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
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Gngt1 |
G protein subunit gamma transducin 1 |
acts_upstream_of_or_within |
ISO |
MGI:3783323 (MGI:3778702|PMID:18367617) |
RGD |
PMID:18367617 |
MGI:3778702 |
NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252
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Gpr88 |
G-protein coupled receptor 88 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 2:204,191,443...204,199,576
Ensembl chr 2:204,191,427...204,199,733
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Guca1a |
guanylate cyclase activator 1A |
acts_upstream_of_or_within |
ISO |
MGI:2664159 (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) |
RGD |
PMID:11493703 PMID:15173221 |
MGI:2664110 MGI:3584028 |
NCBI chr 9:13,587,695...13,598,566
Ensembl chr 9:13,588,525...13,598,565
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Guca1b |
guanylate cyclase activator 1B |
acts_upstream_of_or_within |
ISO |
MGI:2664160 (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) |
RGD |
PMID:11493703 PMID:15173221 |
MGI:2664110 MGI:3584028 |
NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
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Opn1mw |
opsin 1, medium wave sensitive |
involved_in |
IBA IEA |
PMID:21873635 GO_REF:0000043 |
UniProt |
PMID:21873635 |
GO_REF:0000043, RGD:13792537 |
NCBI chr X:151,905,096...151,925,322
Ensembl chr X:151,905,096...151,925,388
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Opn1sw |
opsin 1, short wave sensitive |
involved_in |
IEA IBA |
GO_REF:0000043 PMID:21873635 |
UniProt |
PMID:21873635 |
GO_REF:0000043, RGD:13792537 |
NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
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Opn3 |
opsin 3 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
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Opn4 |
opsin 4 |
involved_in |
IDA IEA IBA ISO |
GO_REF:0000043 PMID:21873635 (MGI:2667269|PMID:12808468) (PMID:15674244) |
UniProt RGD |
PMID:12808468 PMID:15674244 PMID:11834834 PMID:21873635 |
GO_REF:0000043 MGI:2667269, RGD:633348, RGD:13792537 |
NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
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Opn5 |
opsin 5 |
involved_in |
ISO IBA |
(MGI:6359287|PMID:30936473) PMID:21873635 |
RGD |
PMID:30936473 PMID:21873635 |
MGI:6359287, RGD:13792537 |
NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
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Plcb4 |
phospholipase C, beta 4 |
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NAS |
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RGD |
PMID:7688223 |
RGD:633574 |
NCBI chr 3:122,952,965...123,322,522
Ensembl chr 3:122,953,196...123,322,392
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Rcvrn |
recoverin |
acts_upstream_of_or_within |
ISO |
MGI:3584102 (MGI:3584028|PMID:15173221) |
RGD |
PMID:15173221 |
MGI:3584028 |
NCBI chr10:52,388,706...52,396,454
Ensembl chr10:52,388,706...52,396,453
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Rgr |
retinal G protein coupled receptor |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223
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Rho |
rhodopsin |
involved_in acts_upstream_of_or_within |
IEA IBA ISO |
GO_REF:0000107 PMID:21873635 MGI:2181812 (MGI:3655007|PMID:16723493) |
Ensembl RGD |
PMID:16723493 PMID:21873635 |
GO_REF:0000107 MGI:3655007, RGD:13792537 |
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
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Rrh |
retinal pigment epithelium derived rhodopsin homolog |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 2:218,362,195...218,375,202
Ensembl chr 2:218,362,200...218,374,599
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Slc24a2 |
solute carrier family 24 member 2 |
acts_upstream_of |
ISO |
(MGI:6116933|PMID:28650316) |
RGD |
PMID:28650316 |
MGI:6116933 |
NCBI chr 5:101,499,536...101,739,337
Ensembl chr 5:101,502,278...101,739,337
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Slc24a4 |
solute carrier family 24 member 4 |
acts_upstream_of |
ISO |
(MGI:6116933|PMID:28650316) |
RGD |
PMID:28650316 |
MGI:6116933 |
NCBI chr 6:121,278,746...121,419,811
Ensembl chr 6:121,280,031...121,414,949
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Rdh11 |
retinol dehydrogenase 11 |
acts_upstream_of_or_within |
ISO |
MGI:3586379 (MGI:3584215|PMID:15790565) |
RGD |
PMID:15790565 |
MGI:3584215 |
NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
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Rs1 |
retinoschisin 1 |
acts_upstream_of_or_within |
ISO |
MGI:3056058 (MGI:3055638|PMID:15326152) |
RGD |
PMID:15326152 |
MGI:3055638 |
NCBI chr X:33,963,657...33,992,115
Ensembl chr X:33,963,657...33,992,115
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Opn5 |
opsin 5 |
involved_in |
ISO |
(PMID:22043319) (MGI:6230806|PMID:22043319) |
RGD |
PMID:22043319 |
MGI:6230806 |
NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
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Aipl1 |
aryl hydrocarbon receptor-interacting protein-like 1 |
acts_upstream_of_or_within |
ISO |
MGI:3054784 (MGI:3054118|PMID:15365173) |
RGD |
PMID:15365173 |
MGI:3054118 |
NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
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Chrm1 |
cholinergic receptor, muscarinic 1 |
involved_in |
ISO |
(PMID:12196552) |
RGD |
PMID:12196552 |
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NCBI chr 1:205,567,046...205,583,001
Ensembl chr 1:205,567,220...205,582,356
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Gnat1 |
G protein subunit alpha transducin 1 |
involved_in |
ISO |
(PMID:17584859) |
RGD |
PMID:17584859 |
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NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
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Pde6c |
phosphodiesterase 6C |
acts_upstream_of_or_within |
ISO |
MGI:2657247 (MGI:3655007|PMID:16723493) |
RGD |
PMID:16723493 |
MGI:3655007 |
NCBI chr 1:235,909,473...235,965,460
Ensembl chr 1:235,909,775...235,965,315
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Rho |
rhodopsin |
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IDA |
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RGD |
PMID:2525480 |
RGD:6893558 |
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
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Aipl1 |
aryl hydrocarbon receptor-interacting protein-like 1 |
acts_upstream_of_or_within |
ISO |
MGI:3054784|MGI:3054793 (MGI:3054118|PMID:15365173), (MGI:3054134|PMID:15365178) |
RGD |
PMID:15365173 PMID:15365178 |
MGI:3054118 MGI:3054134 |
NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
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Grk1 |
G protein-coupled receptor kinase 1 |
involved_in |
ISS ISO IEA |
GO_REF:0000024 (PMID:15946941) GO_REF:0000107 |
UniProt RGD Ensembl |
PMID:15946941 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
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Gnat1 |
G protein subunit alpha transducin 1 |
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IMP |
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RGD |
PMID:11931744 |
RGD:1599009 |
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
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Grk1 |
G protein-coupled receptor kinase 1 |
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TAS |
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RGD |
PMID:9147475 |
RGD:729748 |
NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
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Opn4 |
opsin 4 |
acts_upstream_of_or_within |
ISO |
(MGI:4438311|PMID:19793992) |
RGD |
PMID:19793992 |
MGI:4438311 |
NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
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Pcp2 |
Purkinje cell protein 2 |
acts_upstream_of_or_within |
ISO |
MGI:3579782 (MGI:3817370|PMID:18768681) |
RGD |
PMID:18768681 |
MGI:3817370 |
NCBI chr12:1,681,659...1,683,899
Ensembl chr12:1,681,659...1,683,899
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Rho |
rhodopsin |
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IDA |
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RGD |
PMID:8814134 |
RGD:6893595 |
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
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Term paths to the root
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