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ONTOLOGY REPORT - ANNOTATIONS

Term:detection of light stimulus
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Accession:GO:0009583 term browser browse the term
Definition:The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal.
Synonyms:exact_synonym: detection of light
 related_synonym: perception of light


show annotations for term's descendants           Sort by:
detection of light stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779|MGI:95779 (MGI:4366192|PMID:19815523) RGD PMID:19815523 MGI:4366192 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845|MGI:95778 (MGI:4366192|PMID:19815523) RGD PMID:19815523 MGI:4366192 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Pde6b phosphodiesterase 6B acts_upstream_of_or_within ISO MGI:1856373 (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO MGI:2181812 (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
absorption of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
adaptation of rhodopsin mediated signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh11 retinol dehydrogenase 11 acts_upstream_of_or_within ISO MGI:3586379 (MGI:3584215|PMID:15790565) RGD PMID:15790565 MGI:3584215 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252 		JBrowse link
G Rs1 retinoschisin 1 acts_upstream_of_or_within ISO MGI:3056058 (MGI:3055638|PMID:15326152) RGD PMID:15326152 MGI:3055638 NCBI chr  X:33,963,657...33,992,115
Ensembl chr  X:33,963,657...33,992,115 		JBrowse link
detection of light stimulus involved in visual perception term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO (MGI:5574432|PMID:24413176) RGD PMID:24413176 MGI:5574432 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223 		JBrowse link
G Best1 bestrophin 1 acts_upstream_of_or_within ISO MGI:3795281 (MGI:3795256|PMID:16636205) RGD PMID:16636205 MGI:3795256 NCBI chr 1:206,629,340...206,646,085
Ensembl chr 1:206,629,500...206,646,063 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F involved_in ISO (PMID:7571473) RGD PMID:7571473 NCBI chr  X:14,868,096...14,896,413
Ensembl chr  X:14,868,024...14,896,413 		JBrowse link
G Cacna2d4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 involved_in ISO (PMID:17033974) RGD PMID:17033974 NCBI chr 4:152,408,657...152,524,614
Ensembl chr 4:152,408,657...152,521,268 		JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO MGI:1856936 (MGI:3795256|PMID:16636205) RGD PMID:16636205 MGI:3795256 NCBI chr 3:36,906,771...37,169,191
Ensembl chr 3:36,910,427...37,168,944 		JBrowse link
G Ccdc66 coiled-coil domain containing 66 involved_in ISO (MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:5141557 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023 		JBrowse link
G Cep250 centrosomal protein 250 involved_in ISO (MGI:6317055|PMID:30998843) RGD PMID:30998843 MGI:6317055 NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (MGI:5315300|PMID:22447858) RGD PMID:22447858 MGI:5315300 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Gja10 gap junction protein, alpha 10 acts_upstream_of_or_within ISO MGI:3043946 (MGI:3654563|PMID:16820008) RGD PMID:16820008 MGI:3654563 NCBI chr 5:46,994,964...47,002,902
Ensembl chr 5:46,992,946...46,996,570 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:17584859)
MGI:2152779 (MGI:3772743|PMID:18171936)		 RGD PMID:17584859 PMID:18171936 MGI:3772743 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:12077706)
MGI:3588845 (MGI:3714271|PMID:17065522)		 RGD PMID:12077706 PMID:17065522 MGI:3714271 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Grm6 glutamate metabotropic receptor 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17405131)		 UniProt
RGD		 PMID:17405131 GO_REF:0000024 NCBI chr10:35,167,985...35,182,717
Ensembl chr10:35,167,985...35,182,717 		JBrowse link
G Gucy2f guanylate cyclase 2F involved_in ISO (MGI:3708225|PMID:17255100) RGD PMID:17255100 MGI:3708225 NCBI chr  X:105,710,356...105,808,183
Ensembl chr  X:105,710,356...105,808,183 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO MGI:1856523|MGI:6367783|MGI:6367794|MGI:97998 (MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485) RGD PMID:26420485 PMID:28053051 MGI:5905515 MGI:6305433 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (MGI:3687059|PMID:12484775) RGD PMID:12484775 MGI:3687059 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Reep6 receptor accessory protein 6 involved_in ISO
ISS		 (PMID:27889058)
GO_REF:0000024		 RGD
UniProt		 PMID:27889058 GO_REF:0000024 NCBI chr 7:9,373,927...9,380,845
Ensembl chr 7:9,373,927...9,380,597 		JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:3028628 (MGI:3027216|PMID:14625292)
PMID:21873635		 RGD PMID:14625292 PMID:21873635 MGI:3027216, RGD:13792537 NCBI chr 1:88,249,438...88,250,151
Ensembl chr 1:88,249,438...88,250,151 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO MGI:102791 (MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:5905515 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 involved_in ISO (PMID:21521437) RGD PMID:21521437 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Sema5a semaphorin 5A acts_upstream_of_or_within ISO MGI:107555 (MGI:5140622|PMID:21835343) RGD PMID:21835343 MGI:5140622 NCBI chr 2:83,309,843...83,741,084
Ensembl chr 2:83,309,843...83,741,084 		JBrowse link
G Sema5b semaphorin 5B acts_upstream_of_or_within ISO MGI:107556 (MGI:5140622|PMID:21835343) RGD PMID:21835343 MGI:5140622 NCBI chr11:65,102,031...65,225,456
Ensembl chr11:65,102,031...65,225,311 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
detection of UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fech ferrochelatase acts_upstream_of_or_within ISO MGI:2384729 (MGI:2384247|PMID:12149233) RGD PMID:12149233 MGI:2384247 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348 		JBrowse link
detection of visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (MGI:5447580|PMID:23172916) RGD PMID:23172916 MGI:5447580 NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Opn5 opsin 5 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin, beta 1 acts_upstream_of_or_within ISO MGI:2388373 (MGI:3772638|PMID:11853756) RGD PMID:11853756 MGI:3772638 NCBI chr 1:153,837,964...153,912,111
Ensembl chr 1:153,838,078...153,904,061 		JBrowse link
G Asic2 acid sensing ion channel subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3043849 (MGI:3042539|PMID:14762118)		 Ensembl
RGD		 PMID:14762118 GO_REF:0000107 MGI:3042539 NCBI chr10:65,870,592...66,940,577
Ensembl chr10:65,870,594...66,940,424 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO MGI:3056615 (MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:3609280 NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO MGI:3527896 (MGI:3527312|PMID:15634774) RGD PMID:15634774 MGI:3527312 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (MGI:1928441|PMID:11095744), (MGI:3609280|PMID:16249514), (MGI:3615719|PMID:15073279), (MGI:3757777|PMID:17881533), (MGI:3772638|PMID:11853756), (MGI:3778702|PMID:18367617) RGD PMID:11095744 PMID:11853756 PMID:15073279 PMID:16249514 PMID:17881533 More... MGI:1928441 MGI:3609280 MGI:3615719 MGI:3757777 MGI:3772638 MGI:3778702 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845 (MGI:3761397|PMID:17408617), (MGI:3772743|PMID:18171936) RGD PMID:17408617 PMID:18171936 MGI:3761397 MGI:3772743 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO MGI:3783323 (MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:3778702 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252 		JBrowse link
G Guca1a guanylate cyclase activator 1A acts_upstream_of_or_within ISO MGI:2664159 (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) RGD PMID:11493703 PMID:15173221 MGI:2664110 MGI:3584028 NCBI chr 9:13,587,695...13,598,566
Ensembl chr 9:13,588,525...13,598,565 		JBrowse link
G Guca1b guanylate cyclase activator 1B acts_upstream_of_or_within ISO MGI:2664160 (MGI:2664110|PMID:11493703), (MGI:3584028|PMID:15173221) RGD PMID:11493703 PMID:15173221 MGI:2664110 MGI:3584028 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455 		JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:151,905,096...151,925,322
Ensembl chr  X:151,905,096...151,925,388 		JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457 		JBrowse link
G Opn3 opsin 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847 		JBrowse link
G Opn4 opsin 4 involved_in IDA
IEA
ISO		 GO_REF:0000043
(MGI:2667269|PMID:12808468)
(PMID:15674244)		 UniProt
RGD		 PMID:12808468 PMID:15674244 PMID:11834834 GO_REF:0000043 MGI:2667269, RGD:633348 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Opn5 opsin 5 involved_in ISO (MGI:6359287|PMID:30936473) RGD PMID:30936473 MGI:6359287 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
G Plcb4 phospholipase C, beta 4 NAS RGD PMID:7688223 RGD:633574 NCBI chr 3:122,952,965...123,322,522
Ensembl chr 3:122,953,196...123,322,392 		JBrowse link
G Rcvrn recoverin acts_upstream_of_or_within ISO MGI:3584102 (MGI:3584028|PMID:15173221) RGD PMID:15173221 MGI:3584028 NCBI chr10:52,388,706...52,396,454
Ensembl chr10:52,388,706...52,396,453 		JBrowse link
G Rgr retinal G protein coupled receptor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:12,801,594...12,816,402
Ensembl chr16:12,801,594...12,816,223 		JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2181812 (MGI:3655007|PMID:16723493)		 Ensembl
RGD		 PMID:16723493 GO_REF:0000107 MGI:3655007 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:218,362,195...218,375,202
Ensembl chr 2:218,362,200...218,374,599 		JBrowse link
G Slc24a4 solute carrier family 24 member 4 acts_upstream_of ISO (MGI:6116933|PMID:28650316) RGD PMID:28650316 MGI:6116933 NCBI chr 6:121,278,746...121,419,811
Ensembl chr 6:121,280,031...121,414,949 		JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 involved_in ISO (PMID:22043319)
(MGI:6230806|PMID:22043319)		 RGD PMID:22043319 MGI:6230806 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784 (MGI:3054118|PMID:15365173) RGD PMID:15365173 MGI:3054118 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922 		JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 involved_in ISO (PMID:12196552) RGD PMID:12196552 NCBI chr 1:205,567,046...205,583,001
Ensembl chr 1:205,567,220...205,582,356 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in ISO (PMID:17584859) RGD PMID:17584859 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO MGI:2657247 (MGI:3655007|PMID:16723493) RGD PMID:16723493 MGI:3655007 NCBI chr 1:235,909,473...235,965,460
Ensembl chr 1:235,909,775...235,965,315 		JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
regulation of rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784|MGI:3054793 (MGI:3054118|PMID:15365173), (MGI:3054134|PMID:15365178) RGD PMID:15365173 PMID:15365178 MGI:3054118 MGI:3054134 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15946941)		 UniProt
Ensembl
RGD		 PMID:15946941 GO_REF:0000024 GO_REF:0000107 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO (MGI:4438311|PMID:19793992) RGD PMID:19793992 MGI:4438311 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Pcp2 Purkinje cell protein 2 acts_upstream_of_or_within ISO MGI:3579782 (MGI:3817370|PMID:18768681) RGD PMID:18768681 MGI:3817370 NCBI chr12:1,681,659...1,683,899
Ensembl chr12:1,681,659...1,683,899 		JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19738
    response to stimulus 10453
      detection of stimulus 1652
        detection of external stimulus 142
          detection of light stimulus 51
            detection of UV + 2
            detection of light stimulus involved in sensory perception + 24
            detection of visible light + 35
            light absorption + 1
            phototransduction + 27
Path 2
Term Annotations click to browse term
  biological_process 19738
    response to stimulus 10453
      response to abiotic stimulus 1540
        response to radiation 517
          response to light stimulus 364
            detection of light stimulus 51
              detection of UV + 2
              detection of light stimulus involved in sensory perception + 24
              detection of visible light + 35
              light absorption + 1
              phototransduction + 27
paths to the root