Gene: Cacna1f (calcium voltage-gated channel subunit alpha1 F) Rattus norvegicus
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Symbol: Cacna1f
Name: calcium voltage-gated channel subunit alpha1 F
Description: ENCODES a protein that exhibits high voltage-gated calcium channel activity (ortholog); voltage-gated calcium channel activity (ortholog); INVOLVED IN visual perception; axonogenesis (ortholog); cellular calcium ion homeostasis (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; Alzheimer's disease pathway; ASSOCIATED WITH abnormal b wave amplitude; abnormal cone electrophysiology; abnormal horizontal cell morphology; ASSOCIATED WITH congenital stationary night blindness; Aland Island eye disease (ortholog); autistic disorder (ortholog); FOUND IN neuronal cell body; perikaryon; photoreceptor outer segment; INTERACTS WITH atrazine; bisphenol A; Butyl parahydroxybenzoate (TN)
AGR Description: Predicted to have high voltage-gated calcium channel activity; involved in visual perception; localizes to the perikaryon and photoreceptor outer segment; used to study congenital stationary night blindness; orthologous to human CACNA1F (calcium voltage-gated channel subunit alpha1 F).
Merged Description: Predicted to have high voltage-gated calcium channel activity; involved in visual perception; localizes to the perikaryon and photoreceptor outer segment; used to study congenital stationary night blindness; orthologous to human CACNA1F (calcium voltage-gated channel subunit alpha1 F); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; Alzheimer's disease pathway; INTERACTS WITH atrazine; bisphenol A; Butyl parahydroxybenzoate (TN).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: calcium channel, voltage-dependent, alpha 1F subunit; calcium channel, voltage-dependent, L type, alpha 1F subunit; voltage-dependent L-type calcium channel subunit alpha-1F
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X15,712,709 - 15,741,135 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X16,504,174 - 16,532,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,908,850 - 26,937,165 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X26,962,318 - 26,990,634 (-)NCBI
CeleraX14,951,395 - 14,979,817 (-)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
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Molecular Pathway Annotations
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References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Cacna1f
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621535
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.