CACNA1F (calcium voltage-gated channel subunit alpha1 F) - Rat Genome Database

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Gene: CACNA1F (calcium voltage-gated channel subunit alpha1 F) Chlorocebus sabaeus
Analyze
Symbol: CACNA1F
Name: calcium voltage-gated channel subunit alpha1 F
RGD ID: 18440006
Description: ENCODES a protein that exhibits high voltage-gated calcium channel activity (ortholog); voltage-gated calcium channel activity (ortholog); INVOLVED IN axonogenesis (ortholog); dendrite morphogenesis (ortholog); detection of light stimulus involved in visual perception (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Aland Island eye disease (ortholog); autistic disorder (ortholog); cone-rod dystrophy (ortholog); FOUND IN membrane (ortholog); neuronal cell body (ortholog); perikaryon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent L-type calcium channel subunit alpha-1F
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,304,831 - 46,330,562 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607611,865,496 - 11,891,390 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACNA1F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,304,831 - 46,330,562 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607611,865,496 - 11,891,390 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CACNA1F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,205,063 - 49,233,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,205,063 - 49,233,371 (-)EnsemblGRCh38hg38GRCh38
GRCh37X49,061,523 - 49,089,802 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,948,467 - 48,976,777 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X48,817,894 - 48,846,204NCBI
CeleraX52,574,536 - 52,602,846 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,718,790 - 46,746,229 (-)NCBIHuRef
CHM1_1X49,093,823 - 49,122,134 (-)NCBICHM1_1
T2T-CHM13v2.0X48,616,922 - 48,645,225 (-)NCBIT2T-CHM13v2.0
Cacna1f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,473,342 - 7,501,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,473,322 - 7,501,435 (+)EnsemblGRCm39 Ensembl
GRCm38X7,607,103 - 7,635,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,607,083 - 7,635,196 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,184,229 - 7,212,322 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,759,391 - 6,792,153 (+)NCBIMGSCv36mm8
MGSCv36X3,776,675 - 3,808,487 (+)NCBIMGSCv36mm8
CeleraX3,836,719 - 3,864,582 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.42NCBI
Cacna1f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,539,992 - 17,568,308 (-)NCBIGRCr8
mRatBN7.2X14,868,096 - 14,896,413 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,868,024 - 14,896,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,682,471 - 19,710,726 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,372,406 - 20,400,665 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,637,551 - 16,665,813 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,712,709 - 15,741,135 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,712,713 - 15,741,103 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,504,174 - 16,532,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,908,850 - 26,937,165 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X26,962,318 - 26,990,634 (-)NCBI
CeleraX14,951,395 - 14,979,817 (-)NCBICelera
Cytogenetic MapXq12NCBI
Cacna1f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543692,035 - 717,364 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955543692,035 - 717,364 (-)NCBIChiLan1.0ChiLan1.0
CACNA1F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,696,660 - 50,725,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,700,039 - 50,728,770 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,504,804 - 41,533,501 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,356,994 - 49,385,678 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,356,994 - 49,385,678 (-)Ensemblpanpan1.1panPan2
CACNA1F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,302,971 - 42,327,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,303,158 - 42,326,774 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,681,688 - 16,706,446 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,444,658 - 42,469,408 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,444,814 - 42,469,408 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,428,611 - 42,453,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,416,270 - 42,440,826 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,511,022 - 42,535,780 (-)NCBIUU_Cfam_GSD_1.0
Cacna1f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,838,179 - 34,865,828 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,078,650 - 1,106,113 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,078,570 - 1,106,153 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,251,370 - 43,283,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,250,449 - 43,284,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,098,467 - 48,132,377 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cacna1f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893945,436 - 970,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893945,378 - 968,041 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_007991705   ⟹   XP_007989896
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X46,304,831 - 46,330,562 (-)NCBI
Vero_WHO_p1.0NW_02366607611,865,496 - 11,891,390 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007989896 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_007989896   ⟸   XM_007991705


Additional Information

Database Acc Id Source(s)
NCBI Gene CACNA1F ENTREZGENE