Cacna1f (calcium channel, voltage-dependent, alpha 1F subunit) - Rat Genome Database

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Gene: Cacna1f (calcium channel, voltage-dependent, alpha 1F subunit) Mus musculus
Analyze
Symbol: Cacna1f
Name: calcium channel, voltage-dependent, alpha 1F subunit
RGD ID: 731993
MGI Page MGI
Description: Enables voltage-gated calcium channel activity. Acts upstream of or within several processes, including intracellular calcium ion homeostasis; neuron projection morphogenesis; and visual perception. Predicted to be located in membrane; perikaryon; and photoreceptor outer segment. Predicted to be part of voltage-gated calcium channel complex. Is expressed in cerebellum and hippocampus. Used to study congenital stationary night blindness 2A. Human ortholog(s) of this gene implicated in Aland Island eye disease; X-linked cone-rod dystrophy 3; congenital stationary night blindness; and congenital stationary night blindness 2A. Orthologous to human CACNA1F (calcium voltage-gated channel subunit alpha1 F).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A930034B14; Cav1; Cav1.4; L-type dihydropyridine-sensitive calcium channel alpha-1f subunit; nerg1; nob2; Sfc1; Sfc17; voltage-dependent L-type calcium channel subunit alpha-1F; voltage-gated calcium channel subunit alpha Cav1.4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,473,342 - 7,501,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,473,322 - 7,501,435 (+)EnsemblGRCm39 Ensembl
GRCm38X7,607,103 - 7,635,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,607,083 - 7,635,196 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,184,229 - 7,212,322 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,759,391 - 6,792,153 (+)NCBIMGSCv36mm8
MGSCv36X3,776,675 - 3,808,487 (+)NCBIMGSCv36mm8
CeleraX3,836,719 - 3,864,582 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal a-wave shape  (IAGP)
abnormal b-wave shape  (IAGP)
abnormal cone electrophysiology  (IAGP)
abnormal electroretinogram waveform feature  (IAGP)
abnormal eye electrophysiology  (IAGP)
abnormal eye morphology  (IEA)
abnormal eye physiology  (IAGP)
abnormal heart morphology  (IEA)
abnormal neuron physiology  (IAGP)
abnormal ocular fundus morphology  (IAGP)
abnormal retina apoptosis  (IAGP)
abnormal retina bipolar cell morphology  (IAGP)
abnormal retina cone cell morphology  (IAGP)
abnormal retina ganglion cell morphology  (IAGP)
abnormal retina horizontal cell morphology  (IAGP)
abnormal retina inner plexiform layer morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retina neuronal layer morphology  (IAGP)
abnormal retina outer nuclear layer morphology  (IAGP)
abnormal retina outer plexiform layer morphology  (IAGP)
abnormal retina rod bipolar cell morphology  (IAGP)
abnormal rod electrophysiology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal synapse morphology  (IAGP)
abnormal vision  (IAGP)
absent b-wave  (IAGP)
absent optic nerve  (IEA)
absent visual evoked potential  (IAGP)
blindness  (IAGP)
decreased a-wave amplitude  (IAGP)
decreased b-wave amplitude  (IAGP)
decreased retina cone cell number  (IAGP)
disorganized retina outer plexiform layer  (IAGP)
enlarged heart  (IEA)
hyperactivity  (IEA)
increased circulating creatinine level  (IEA)
increased circulating insulin level  (IEA)
increased retina apoptosis  (IAGP)
retina cone cell degeneration  (IAGP)
retina gliosis  (IAGP)
retina outer nuclear layer degeneration  (IAGP)
retina photoreceptor degeneration  (IAGP)
retina rod cell degeneration  (IAGP)
retina spots  (IAGP)
thin retina outer nuclear layer  (IAGP)
thin retina outer plexiform layer  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse. Brunkow ME, etal., Nat Genet 2001 Jan;27(1):68-73.
2. Voltage-gated calcium channels. Catterall WA Cold Spring Harb Perspect Biol. 2011 Aug 1;3(8):a003947. doi: 10.1101/cshperspect.a003947.
3. A naturally-occurring mutation in Cacna1f in a rat model of congenital stationary night blindness. Gu Y, etal., Mol Vis. 2008 Jan 9;14:20-8.
4. A novel CACNA1F gene mutation causes Aland Island eye disease. Jalkanen R, etal., Invest Ophthalmol Vis Sci. 2007 Jun;48(6):2498-502. doi: 10.1167/iovs.06-1103.
5. X linked cone-rod dystrophy, CORDX3, is caused by a mutation in the CACNA1F gene. Jalkanen R, etal., J Med Genet. 2006 Aug;43(8):699-704. doi: 10.1136/jmg.2006.040741. Epub 2006 Feb 27.
6. A transcript map of a 2-Mb BAC contig in the proximal portion of the mouse X chromosome and regional mapping of the scurfy mutation. Means GD, etal., Genomics 2000 May 1;65(3):213-23.
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. MGD IEA MGD IEA
9. Expression of the alpha1F calcium channel subunit by photoreceptors in the rat retina. Morgans CW, etal., Mol Vis 2001 Aug 22;7:202-9.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. Mouse MP Annotation Import Pipeline RGD automated import pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Thirty distinct CACNA1F mutations in 33 families with incomplete type of XLCSNB and Cacna1f expression profiling in mouse retina. Wutz K, etal., Eur J Hum Genet 2002 Aug;10(8):449-56.
Additional References at PubMed
PMID:10349636   PMID:10873387   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12478624   PMID:12900400   PMID:14744918   PMID:15452577   PMID:16141072  
PMID:16141073   PMID:16155113   PMID:16332266   PMID:16332269   PMID:16597347   PMID:16985003   PMID:17028172   PMID:17111373   PMID:17479213   PMID:18076080   PMID:18287559   PMID:18596967  
PMID:18809727   PMID:18952919   PMID:19717559   PMID:20188150   PMID:20238058   PMID:20937870   PMID:21052544   PMID:21267068   PMID:21835646   PMID:21873635   PMID:22183401   PMID:22936811  
PMID:23675510   PMID:24051672   PMID:24064553   PMID:24163243   PMID:24453333   PMID:24466230   PMID:25258313   PMID:25468907   PMID:25921334   PMID:26024096   PMID:26402607   PMID:27270916  
PMID:28262416   PMID:28490646   PMID:29179637   PMID:29875267   PMID:30445045   PMID:30786075   PMID:31335952   PMID:32249787   PMID:32290105   PMID:32879010   PMID:32940604   PMID:33117610  
PMID:33526839   PMID:33986362   PMID:35440113   PMID:37181655   PMID:38355793  


Genomics

Comparative Map Data
Cacna1f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,473,342 - 7,501,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,473,322 - 7,501,435 (+)EnsemblGRCm39 Ensembl
GRCm38X7,607,103 - 7,635,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,607,083 - 7,635,196 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,184,229 - 7,212,322 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,759,391 - 6,792,153 (+)NCBIMGSCv36mm8
MGSCv36X3,776,675 - 3,808,487 (+)NCBIMGSCv36mm8
CeleraX3,836,719 - 3,864,582 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.42NCBI
CACNA1F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,205,063 - 49,233,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,205,063 - 49,233,371 (-)EnsemblGRCh38hg38GRCh38
GRCh37X49,061,523 - 49,089,802 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,948,467 - 48,976,777 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X48,817,894 - 48,846,204NCBI
CeleraX52,574,536 - 52,602,846 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,718,790 - 46,746,229 (-)NCBIHuRef
CHM1_1X49,093,823 - 49,122,134 (-)NCBICHM1_1
T2T-CHM13v2.0X48,616,922 - 48,645,225 (-)NCBIT2T-CHM13v2.0
Cacna1f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,539,992 - 17,568,308 (-)NCBIGRCr8
mRatBN7.2X14,868,096 - 14,896,413 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,868,024 - 14,896,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,682,471 - 19,710,726 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,372,406 - 20,400,665 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,637,551 - 16,665,813 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,712,709 - 15,741,135 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,712,713 - 15,741,103 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,504,174 - 16,532,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,908,850 - 26,937,165 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X26,962,318 - 26,990,634 (-)NCBI
CeleraX14,951,395 - 14,979,817 (-)NCBICelera
Cytogenetic MapXq12NCBI
Cacna1f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543692,035 - 717,364 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955543692,035 - 717,364 (-)NCBIChiLan1.0ChiLan1.0
CACNA1F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,696,660 - 50,725,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,700,039 - 50,728,770 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,504,804 - 41,533,501 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,356,994 - 49,385,678 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,356,994 - 49,385,678 (-)Ensemblpanpan1.1panPan2
CACNA1F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,302,971 - 42,327,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,303,158 - 42,326,774 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,681,688 - 16,706,446 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,444,658 - 42,469,408 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,444,814 - 42,469,408 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,428,611 - 42,453,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,416,270 - 42,440,826 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,511,022 - 42,535,780 (-)NCBIUU_Cfam_GSD_1.0
Cacna1f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,838,179 - 34,865,828 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,078,650 - 1,106,113 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,078,570 - 1,106,153 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,251,370 - 43,283,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,250,449 - 43,284,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,098,467 - 48,132,377 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA1F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,304,831 - 46,330,562 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607611,865,496 - 11,891,390 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893945,436 - 970,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893945,378 - 968,041 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacna1f
764 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3012
Count of miRNA genes:863
Interacting mature miRNAs:1125
Transcripts:ENSMUST00000115725, ENSMUST00000115726, ENSMUST00000123979, ENSMUST00000128628, ENSMUST00000133637, ENSMUST00000141634, ENSMUST00000144522, ENSMUST00000151208, ENSMUST00000155090, ENSMUST00000156047, ENSMUST00000157000
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse

Markers in Region
DXImx28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,629,020 - 7,629,322UniSTSGRCm38
MGSCv37X7,206,146 - 7,206,448UniSTSGRCm37
CeleraX3,842,593 - 3,842,895UniSTS
Cytogenetic MapXA1.1UniSTS
cM MapX UniSTS
DXMit26  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,612,495 - 7,612,712UniSTSGRCm38
MGSCv37X7,189,621 - 7,189,838UniSTSGRCm37
CeleraX3,858,973 - 3,859,190UniSTS
Cytogenetic MapXA1.1UniSTS
cM MapX1.5UniSTS
Whitehead GeneticX1.1UniSTS
Whitehead/MRC_RHX17.08UniSTS
Whitehead_YACX UniSTS
RH139341  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,634,981 - 7,635,164UniSTSGRCm38
MGSCv37X7,212,107 - 7,212,290UniSTSGRCm37
CeleraX3,836,751 - 3,836,934UniSTS
Cytogenetic MapXA1.1UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000115725   ⟹   ENSMUSP00000111390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,473,368 - 7,501,435 (+)Ensembl
GRCm38.p6 EnsemblX7,607,129 - 7,635,196 (+)Ensembl
Ensembl Acc Id: ENSMUST00000115726   ⟹   ENSMUSP00000111391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,473,338 - 7,501,435 (+)Ensembl
GRCm38.p6 EnsemblX7,607,099 - 7,635,196 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,492,469 - 7,494,180 (+)Ensembl
GRCm38.p6 EnsemblX7,626,230 - 7,627,941 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128628   ⟹   ENSMUSP00000119207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,493,433 - 7,496,485 (+)Ensembl
GRCm38.p6 EnsemblX7,627,194 - 7,630,246 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133637   ⟹   ENSMUSP00000116051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,473,359 - 7,485,372 (+)Ensembl
GRCm38.p6 EnsemblX7,607,120 - 7,619,133 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,473,383 - 7,501,433 (+)Ensembl
GRCm38.p6 EnsemblX7,607,144 - 7,635,194 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,473,337 - 7,484,348 (+)Ensembl
GRCm38.p6 EnsemblX7,607,098 - 7,618,109 (+)Ensembl
Ensembl Acc Id: ENSMUST00000151208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,497,515 - 7,499,228 (+)Ensembl
GRCm38.p6 EnsemblX7,631,276 - 7,632,989 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155090   ⟹   ENSMUSP00000138116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,473,322 - 7,501,432 (+)Ensembl
GRCm38.p6 EnsemblX7,607,083 - 7,635,193 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156047   ⟹   ENSMUSP00000115012
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,493,433 - 7,496,738 (+)Ensembl
GRCm38.p6 EnsemblX7,627,194 - 7,630,499 (+)Ensembl
Ensembl Acc Id: ENSMUST00000157000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,494,428 - 7,496,001 (+)Ensembl
GRCm38.p6 EnsemblX7,628,189 - 7,629,762 (+)Ensembl
RefSeq Acc Id: NM_019582   ⟹   NP_062528
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,473,342 - 7,501,435 (+)NCBI
GRCm38X7,607,103 - 7,635,196 (+)NCBI
MGSCv37X7,184,229 - 7,212,322 (+)RGD
CeleraX3,836,719 - 3,864,582 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030251408   ⟹   XP_030107268
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,473,385 - 7,501,435 (+)NCBI
GRCm38X7,607,146 - 7,635,196 (+)NCBI
Sequence:
RefSeq Acc Id: NP_062528   ⟸   NM_019582
- UniProtKB: Q7TNI3 (UniProtKB/TrEMBL),   B1AVA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030107268   ⟸   XM_030251408
- Peptide Label: isoform X1
- UniProtKB: B1AVA4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000111390   ⟸   ENSMUST00000115725
Ensembl Acc Id: ENSMUSP00000111391   ⟸   ENSMUST00000115726
Ensembl Acc Id: ENSMUSP00000116051   ⟸   ENSMUST00000133637
Ensembl Acc Id: ENSMUSP00000119207   ⟸   ENSMUST00000128628
Ensembl Acc Id: ENSMUSP00000115012   ⟸   ENSMUST00000156047
Ensembl Acc Id: ENSMUSP00000138116   ⟸   ENSMUST00000155090
Protein Domains
Ion transport   Voltage-dependent calcium channel alpha-1 subunit   Voltage-dependent L-type calcium channel IQ-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIS7-F1-model_v2 AlphaFold Q9JIS7 1-1985 view protein structure

Promoters
RGD ID:13679972
Promoter ID:EPDNEW_M24135
Type:multiple initiation site
Name:Cacna1f_1
Description:Mus musculus calcium channel, voltage-dependent, alpha 1F subunit, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24136  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X7,607,117 - 7,607,177EPDNEW
RGD ID:13679974
Promoter ID:EPDNEW_M24136
Type:single initiation site
Name:Cacna1f_2
Description:Mus musculus calcium channel, voltage-dependent, alpha 1F subunit, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24135  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X7,614,291 - 7,614,351EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859639 AgrOrtholog
Ensembl Genes ENSMUSG00000031142 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000115725.9 UniProtKB/TrEMBL
  ENSMUST00000115726 ENTREZGENE
  ENSMUST00000115726.9 UniProtKB/TrEMBL
  ENSMUST00000128628.8 UniProtKB/TrEMBL
  ENSMUST00000133637.8 UniProtKB/TrEMBL
  ENSMUST00000155090.8 UniProtKB/TrEMBL
  ENSMUST00000156047.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.2180 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.2500 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro CAC1F_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPHH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_a1su_IQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_alpha-1_subunit UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_L_a1su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCCAlpha1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54652 UniProtKB/TrEMBL
MGD MGI:1859639 ENTREZGENE
NCBI Gene 54652 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1F UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ca_chan_IQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAC1F_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPHH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cacna1f PhenoGen
PRINTS CACHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LVDCCALPHA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Ca_chan_IQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AVA4 ENTREZGENE, UniProtKB/TrEMBL
  B1AVA5_MOUSE UniProtKB/TrEMBL
  B1AVA6_MOUSE UniProtKB/TrEMBL
  CAC1F_MOUSE UniProtKB/Swiss-Prot
  Q3UWK7_MOUSE UniProtKB/TrEMBL
  Q7TNI3 ENTREZGENE, UniProtKB/TrEMBL
  Q8C8Q4_MOUSE UniProtKB/TrEMBL
  Q9JIS7 ENTREZGENE
  S4R182_MOUSE UniProtKB/TrEMBL