RH139341 Marker Search Result - Rat Genome Database

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Marker: RH139341

Symbol: RH139341
Previously known as: AI576653; AI717377; 
RGD ID: 5033579
Expected Size: 184 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X14,868,050 - 14,868,234 (+)MAPPERmRatBN7.2
Rnor_6.0X15,712,742 - 15,712,925NCBIRnor6.0
Rnor_5.0X16,504,207 - 16,504,390UniSTSRnor5.0
RGSC_v3.4X26,908,805 - 26,908,988UniSTSRGSC3.4
CeleraX14,951,350 - 14,951,533UniSTS
RH 3.4 Map5791.3UniSTS
Cytogenetic MapXq13UniSTS
Is Marker For: Genes:   Cacna1f  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AGGAAGGGCAGGGAATTTATTG
Reverse Primer CCTGGATGAGATGGACAGTGC
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621535Cacna1fcalcium voltage-gated channel subunit alpha1 FX1486809614896413Rat

Nucleotide Sequences
GenBank Nucleotide DQ393415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 114493 UniSTS
UniSTS 221427 UniSTS