Creb1 (cAMP responsive element binding protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Creb1 (cAMP responsive element binding protein 1) Rattus norvegicus
Analyze
Symbol: Creb1
Name: cAMP responsive element binding protein 1
RGD ID: 620218
Description: Exhibits several functions, including Hsp70 protein binding activity; RNA polymerase II transcription coactivator binding activity; and arrestin family protein binding activity. Involved in several processes, including cellular response to growth factor stimulus; learning or memory; and regulation of gene expression. Localizes to several cellular components, including axon; chromatin; and mitochondrial matrix. Used to study transient cerebral ischemia. Biomarker of Huntington's disease; brain ischemia; and sciatic neuropathy. Orthologous to human CREB1 (cAMP responsive element binding protein 1); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; adenosine signaling pathway; follicle-stimulating hormone signaling pathway; INTERACTS WITH (R)-adrenaline; (R)-lipoic acid; (R)-Salsolinol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cAMP response element binding protein 1; cAMP-responsive element-binding protein 1; Creb; CREB-1; cyclic AMP-responsive element-binding protein 1; Y protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2965,903,511 - 65,972,562 (+)NCBI
Rnor_6.0 Ensembl971,230,108 - 71,293,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0971,229,753 - 71,298,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0971,277,171 - 71,346,198 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4963,170,785 - 63,234,727 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1963,317,766 - 63,381,709 (+)NCBI
Celera963,310,784 - 63,374,139 (+)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-alpha-tocopherol  (ISO)
(+)-catechin  (ISO)
(+)-epicatechin-3-O-gallate  (ISO)
(+)-syringaresinol beta-D-glucoside  (ISO)
(-)-anisomycin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(R)-adrenaline  (EXP,ISO)
(R)-lipoic acid  (EXP)
(R)-Salsolinol  (EXP)
(S)-3,5-dihydroxyphenylglycine  (EXP,ISO)
(S)-AMPA  (EXP)
(S)-amphetamine  (EXP)
(S)-nicotine  (EXP,ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-bis(2-aminoethyl)-2-hydroxy-3-oxotriazane  (ISO)
1,2-dichloroethane  (ISO)
1,2-naphthoquinone  (ISO)
1,3-benzothiazole-2-thiol  (ISO)
1,3-dichloropropan-2-ol  (ISO)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (ISO)
1-bromopropane  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-fluoro-2,4-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
1H-[1,2,4]oxadiazolo[4,3-a]quinoxalin-1-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-D  (ISO)
2,4-dinitrobenzenesulfonic acid  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methyl-6-(phenylethynyl)pyridine  (EXP,ISO)
2-naphthylamine  (ISO)
23-epi-26-deoxyactein  (ISO)
3',5'-cyclic AMP  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3-methylcholanthrene  (EXP)
3-nitropropanoic acid  (EXP)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-[1-hydroxy-2-[4-(phenylmethyl)-1-piperidinyl]propyl]phenol  (EXP)
4-aminobenzoic acid  (ISO)
4-hydroxynon-2-enal  (ISO)
4-nonylphenol  (ISO)
4-tert-Octylphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8-(4-chlorophenylthio)-cAMP  (EXP)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (ISO)
acrolein  (EXP,ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP,ISO)
allethrin  (EXP)
alpha-pinene  (ISO)
alternariol  (ISO)
AM-251  (ISO)
amino acid  (ISO)
aminoguanidine  (ISO)
ammonium hexachloroplatinate  (ISO)
amphetamine  (EXP,ISO)
anandamide  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP,ISO)
antimony(0)  (EXP,ISO)
antimycin A  (ISO)
apocynin  (ISO)
arachidonic acid  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
aspartame  (ISO)
atenolol  (ISO)
atosiban  (ISO)
atrazine  (EXP,ISO)
atropine  (EXP)
baclofen  (ISO)
BAPTA  (ISO)
bathocuproine disulfonic acid  (ISO)
Bay-K-8644  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beryllium difluoride  (ISO)
beryllium sulfate  (ISO)
beta-naphthoflavone  (ISO)
betaxolol  (EXP)
bicuculline  (EXP)
bilobalide  (ISO)
biphenyl-4-amine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (EXP)
bisphenol F  (EXP)
brimonidine tartrate  (EXP)
bucladesine  (ISO)
buprenorphine  (EXP)
butan-1-ol  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
caffeine  (EXP,ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
cannabidiol  (ISO)
cannabigerol  (ISO)
capsaicin  (EXP)
carbon dioxide  (EXP)
carbon nanotube  (ISO)
casticin  (ISO)
celecoxib  (ISO)
chaetocin  (EXP)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
cholesterol  (EXP)
choline  (ISO)
cilostazol  (EXP,ISO)
cisplatin  (ISO)
citalopram  (ISO)
clozapine  (ISO)
cobalt dichloride  (EXP,ISO)
cocaine  (EXP,ISO)
colforsin daropate hydrochloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (ISO)
crocidolite asbestos  (ISO)
crocin-1  (EXP)
curcumin  (EXP,ISO)
cycloheximide  (ISO)
cyclophosphamide  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP,ISO)
D-glucose  (EXP,ISO)
daidzein  (EXP)
DDE  (ISO)
DDT  (ISO)
decabromodiphenyl ether  (EXP)
deoxynivalenol  (ISO)
desferrioxamine B  (EXP)
desipramine  (EXP)
dexamethasone  (EXP,ISO)
diallyl disulfide  (ISO)
diarsenic trioxide  (ISO)
diazepam  (EXP,ISO)
diazinon  (EXP,ISO)
dibenziodolium  (ISO)
dibutyl phthalate  (EXP,ISO)
dichlorvos  (EXP)
dieldrin  (ISO)
dioxygen  (EXP)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (EXP,ISO)
disulfiram  (ISO)
dopamine  (EXP)
dorsomorphin  (ISO)
elemental selenium  (EXP,ISO)
emetine  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
ethylene glycol bis(2-aminoethyl)tetraacetic acid  (ISO)
etoposide  (ISO)
eugenol  (ISO)
fenvalerate  (EXP)
fisetin  (ISO)
fluoxetine  (EXP,ISO)
folic acid  (EXP,ISO)
folpet  (ISO)
formaldehyde  (ISO)
fructose  (EXP)
furan  (EXP)
gallic acid  (ISO)
gallocatechin  (ISO)
genistein  (EXP)
Ginkgolide C  (ISO)
glucagon  (EXP)
glucose  (EXP,ISO)
glycyrrhizinic acid  (ISO)
glyphosate  (ISO)
GW 1929  (ISO)
GYKI 52466  (EXP)
haloperidol  (EXP,ISO)
heroin  (EXP)
hexadecanoic acid  (ISO)
histamine  (ISO)
hydrogen peroxide  (ISO)
imipramine  (EXP,ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
isoprenaline  (EXP,ISO)
isotretinoin  (ISO)
ketoconazole  (EXP,ISO)
KN-93  (EXP)
kojic acid  (ISO)
KT 5823  (ISO)
L-methionine  (ISO)
L-mimosine  (EXP)
lanthanum atom  (EXP)
lead diacetate  (EXP,ISO)
lead(0)  (EXP,ISO)
lead(2+)  (EXP,ISO)
lead(II) chloride  (ISO)
lipoic acid  (EXP)
lipopolysaccharide  (ISO)
lipoteichoic acid  (ISO)
liraglutide  (EXP)
lithium chloride  (EXP,ISO)
lithocholic acid  (ISO)
losartan  (EXP)
lovastatin  (EXP)
LY294002  (EXP,ISO)
maneb  (EXP,ISO)
manganese atom  (EXP,ISO)
manganese(0)  (EXP,ISO)
manganese(II) chloride  (EXP,ISO)
Mecamylamine  (EXP)
melatonin  (ISO)
memantine  (EXP)
menadione  (ISO)
metformin  (EXP)
methamphetamine  (EXP)
methimazole  (EXP)
methotrexate  (EXP,ISO)
methoxychlor  (EXP,ISO)
methyl methanesulfonate  (ISO)
methyl salicylate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (EXP,ISO)
methylphenidate  (EXP)
methylseleninic acid  (ISO)
Mitotane  (ISO)
monosodium L-glutamate  (EXP,ISO)
morphine  (EXP,ISO)
mycophenolic acid  (ISO)
N(6)-butyryl-cAMP  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP,ISO)
N-[2-[4-(2-methoxyphenyl)-1-piperazinyl]ethyl]-N-(2-pyridinyl)cyclohexanecarboxamide  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
nickel sulfate  (ISO)
nicotine  (EXP,ISO)
nifedipine  (EXP,ISO)
nimodipine  (ISO)
nitroprusside  (EXP)
Nonylphenol  (ISO)
o-anisidine  (ISO)
okadaic acid  (EXP)
olanzapine  (EXP)
ozone  (ISO)
p-tert-Amylphenol  (ISO)
paclitaxel  (EXP)
Panaxynol  (EXP)
papaverine  (EXP)
paracetamol  (ISO)
paraquat  (EXP,ISO)
Paxilline  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
peroxynitrous acid  (ISO)
phenobarbital  (EXP,ISO)
phenol  (ISO)
phenylarsine oxide  (ISO)
phenylephrine  (EXP)
phenylpropanolamine  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
piperine  (ISO)
pirinixic acid  (ISO)
platycodin D  (ISO)
potassium atom  (EXP)
potassium chloride  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
prazosin  (EXP)
proanthocyanidin  (ISO)
progesterone  (EXP)
propranolol  (EXP)
prostaglandin E2  (ISO)
puerarin  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
raloxifene  (EXP)
resveratrol  (EXP,ISO)
rimonabant  (EXP,ISO)
Ro 31-8220  (EXP,ISO)
roflumilast  (EXP)
rolipram  (EXP)
rotenone  (ISO)
rubimaillin  (ISO)
ryanodine  (EXP)
S-nitroso-N-acetyl-D-penicillamine  (ISO)
SB 203580  (EXP,ISO)
SB 415286  (EXP,ISO)
SCH 23390  (EXP)
SCH772984  (EXP)
scopolamine  (ISO)
selenium atom  (EXP,ISO)
selumetinib  (ISO)
serotonin  (ISO)
sertraline  (EXP)
sevoflurane  (EXP)
sildenafil citrate  (ISO)
simvastatin  (ISO)
sirolimus  (ISO)
SKF 38393  (EXP)
SL-327  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (EXP,ISO)
Soman  (EXP)
sphingosine 1-phosphate  (ISO)
staurosporine  (ISO)
streptozocin  (EXP,ISO)
sucrose  (EXP)
suramin  (ISO)
T-2 toxin  (EXP)
tacrine  (ISO)
tadalafil  (ISO)
tamibarotene  (ISO)
tauroursodeoxycholic acid  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
testosterone enanthate  (EXP)
Tetrachlorobisphenol A  (EXP)
tetrachloromethane  (EXP)
tetrodotoxin  (EXP)
thapsigargin  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
toluene  (ISO)
topiramate  (EXP)
tranylcypromine  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate  (EXP)
tyrphostin AG 1478  (EXP,ISO)
U-73122  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)
vorinostat  (EXP)
WIN 55212-2  (EXP)
wortmannin  (ISO)
Xamoterol  (ISO)
xanthohumol  (ISO)
xenon atom  (EXP)
xenon(0)  (EXP)
XL147  (ISO)
Yessotoxin  (ISO)
zebularine  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)
zolpidem  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aging  (IEP)
axonogenesis  (ISO)
cellular response to fatty acid  (IEP)
cellular response to growth factor stimulus  (ISO)
cellular response to hepatocyte growth factor stimulus  (ISO)
cellular response to insulin-like growth factor stimulus  (IEP)
cellular response to leukemia inhibitory factor  (ISO)
cellular response to nerve growth factor stimulus  (IEP)
cellular response to platelet-derived growth factor stimulus  (IEP)
cellular response to retinoic acid  (ISO)
cellular response to transforming growth factor beta stimulus  (IEP)
cellular response to zinc ion  (ISO)
chemotaxis to arachidonic acid  (IMP)
circadian rhythm  (IEP,ISO)
lactation  (ISO)
lung epithelium development  (ISO)
lung saccule development  (ISO)
mammary gland development  (ISO)
memory  (IMP,ISO)
negative regulation of gene expression  (IMP)
negative regulation of neuron death  (IMP)
negative regulation of transcription by competitive promoter binding  (ISO)
pituitary gland development  (ISO)
positive regulation of apoptotic process  (IMP)
positive regulation of cardiac muscle tissue development  (ISO)
positive regulation of fat cell differentiation  (ISO,ISS)
positive regulation of hormone secretion  (ISO)
positive regulation of lipid biosynthetic process  (ISO,ISS)
positive regulation of long-term synaptic potentiation  (IMP)
positive regulation of multicellular organism growth  (ISO)
positive regulation of osteoclast differentiation  (ISO)
positive regulation of RNA polymerase II transcription preinitiation complex assembly  (IMP)
positive regulation of transcription by RNA polymerase II  (IDA,IMP,ISO)
positive regulation of transcription, DNA-templated  (ISO,ISS)
positive regulation of transforming growth factor beta3 production  (IMP)
protein stabilization  (ISO,ISS)
regulation of apoptotic process  (IDA)
regulation of cell size  (ISO)
regulation of circadian rhythm  (IMP)
regulation of fibroblast proliferation  (IMP)
regulation of glial cell proliferation  (IMP)
regulation of transcription by RNA polymerase II  (IBA)
regulation of transcription, DNA-templated  (ISO)
response to activity  (IEP)
response to drug  (IEP,ISO)
response to glucagon  (ISO,ISS)
response to hypoxia  (IEP)
response to L-glutamate  (IEP)
response to nicotine  (IEP)
secretory granule organization  (ISO)
transcription by RNA polymerase II  (IMP)
transforming growth factor beta receptor signaling pathway  (IMP)
type I pneumocyte differentiation  (ISO)
visual learning  (IMP)

Cellular Component

References

References - curated
1. Aoto K, etal., Birth Defects Res A Clin Mol Teratol. 2008 Apr;82(4):224-31. doi: 10.1002/bdra.20447.
2. Brightwell JJ, etal., Neurobiol Learn Mem. 2004 Jan;81(1):19-26.
3. Chaudhary J and Skinner MK, Biol Reprod. 2001 Aug;65(2):568-74.
4. Chen YC, etal., J Neurosci. 2014 Jul 16;34(29):9574-89. doi: 10.1523/JNEUROSCI.4302-13.2014.
5. Cox LJ, etal., Nat Cell Biol. 2008 Feb;10(2):149-59. doi: 10.1038/ncb1677. Epub 2008 Jan 13.
6. Davies JS, etal., J Biol Chem. 2011 Apr 29;286(17):15227-39. doi: 10.1074/jbc.M110.201996. Epub 2011 Mar 2.
7. Deng L, etal., J Cell Biochem. 2011 Apr;112(4):1046-54. doi: 10.1002/jcb.23017.
8. Dronadula N, etal., J Lipid Res. 2006 Apr;47(4):767-77. Epub 2005 Dec 28.
9. Fentzke RC, etal., J Clin Invest 1998 Jun 1;101(11):2415-26.
10. Garat CV, etal., J Cardiovasc Pharmacol. 2013 Dec;62(6):539-48. doi: 10.1097/FJC.0000000000000014.
11. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
12. Giampa C, etal., Eur J Neurosci. 2006 Jan;23(1):11-20.
13. Giampa C, etal., Eur J Neurosci. 2009 Mar;29(5):902-10. doi: 10.1111/j.1460-9568.2009.06649.x.
14. GOA data from the GO Consortium
15. Golan M, etal., Int J Neuropsychopharmacol. 2011 Nov;14(10):1289-300. doi: 10.1017/S1461145710001550. Epub 2011 Jan 12.
16. Gomez AM, etal., PLoS One. 2012;7(8):e44149. doi: 10.1371/journal.pone.0044149. Epub 2012 Aug 31.
17. Gonzalez GA, etal., Nature 1989 Feb 23;337(6209):749-52.
18. Herzig S, etal., Nature 2001 Sep 13;413(6852):179-83.
19. Herzig S, etal., Nature 2003 Nov 13;426(6963):190-3.
20. Hotte M, etal., Behav Brain Res. 2006 Jul 15;171(1):127-33. Epub 2006 May 9.
21. Hu BR, etal., Neuroscience. 1999 Mar;89(2):437-52.
22. Hua P, etal., Am J Physiol Renal Physiol. 2012 Jun 1;302(11):F1418-29. doi: 10.1152/ajprenal.00477.2011. Epub 2012 Feb 22.
23. Kwon YJ, etal., Biochem Biophys Res Commun. 2009 Mar 13;380(3):655-9. doi: 10.1016/j.bbrc.2009.01.159. Epub 2009 Jan 29.
24. Kyosseva SV, etal., Arch Gen Psychiatry. 2000 Jul;57(7):685-91.
25. Lee J, etal., J Biol Chem. 2005 Dec 9;280(49):40398-401. Epub 2005 Oct 5.
26. Leone V, etal., Mol Endocrinol. 2011 Oct;25(10):1819-30. doi: 10.1210/me.2011-0014. Epub 2011 Aug 4.
27. Li MY, etal., PLoS One. 2009 Nov 12;4(11):e7820. doi: 10.1371/journal.pone.0007820.
28. Liu G, etal., J Biol Chem. 2006 Oct 6;281(40):29479-90. Epub 2006 Aug 4.
29. Liu X, etal., Mol Pharmacol. 2006 Dec;70(6):1992-2003. Epub 2006 Sep 7.
30. Liu Y, etal., J Neurochem. 2013 Sep;126(6):771-80. doi: 10.1111/jnc.12370. Epub 2013 Aug 6.
31. Louet JF, etal., J Biol Chem 2002 Oct 11;277(41):37991-8000.
32. Mantamadiotis T, etal., Nat Genet 2002 May;31(1):47-54.
33. MGD data from the GO Consortium
34. NCBI rat LocusLink and RefSeq merged data July 26, 2002
35. Nieto-Bodelon M, etal., Acta Neuropathol. 2006 Apr;111(4):341-50. Epub 2006 Feb 23.
36. OMIM Disease Annotation Pipeline
37. Pipeline to import KEGG annotations from KEGG into RGD
38. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
39. Pipeline to import SMPDB annotations from SMPDB into RGD
40. Radhakrishnan I, etal., Cell. 1997 Dec 12;91(6):741-52.
41. Ramirez M and Lamas M, Mol Vis. 2009;15:713-21. Epub 2009 Apr 10.
42. RGD automated import pipeline for gene-chemical interactions
43. Riccio A, etal., Mol Cell. 2006 Jan 20;21(2):283-94.
44. Rodriguez A and Ferrer I, Neurosci Lett. 2007 Jun 21;421(1):10-5. Epub 2007 May 4.
45. Saifudeen Z, etal., Am J Physiol Renal Physiol. 2005 May;288(5):F899-909. Epub 2005 Jan 4.
46. Schuh RA, etal., J Neurochem 2005 Jan;92(2):388-94.
47. Short ML, etal., Nucleic Acids Res 1991 Aug 11;19(15):4290.
48. Takayanagi Y, etal., J Clin Invest. 2008 Dec;118(12):4014-24. doi: 10.1172/JCI34682. Epub 2008 Nov 3.
49. Tischkau SA, etal., J Biol Chem 2003 Jan 10;278(2):718-23.
50. Tokunou T, etal., Circulation 2003 Sep 9;108(10):1246-52.
51. Wang L, etal., J Huazhong Univ Sci Technolog Med Sci. 2011 Apr;31(2):169-73. doi: 10.1007/s11596-011-0245-2. Epub 2011 Apr 20.
52. Wang LH, etal., Wei Sheng Yan Jiu. 2005 Jan;34(1):70-3.
53. Wang Y, etal., Autophagy. 2013 Dec;9(12):2069-86. doi: 10.4161/auto.26447. Epub 2013 Nov 1.
54. Warburton EC, etal., J Neurosci. 2005 Jul 6;25(27):6296-303.
55. Watson PA, etal., Endocrinology 2002 Aug;143(8):2922-9.
56. Yam JW, etal., Oncogene 2003 Jun 19;22(25):3901-10.
57. Yazawa T, etal., Endocrinology. 2003 May;144(5):1920-30.
58. Yuan SH, etal., Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2909-14. doi: 10.1073/pnas.0805555106. Epub 2009 Feb 5.
59. Zhang L, etal., Brain Res Bull. 2013 Jul;96:45-53. doi: 10.1016/j.brainresbull.2013.04.009. Epub 2013 May 2.
Additional References at PubMed
PMID:1396344   PMID:1646483   PMID:1655749   PMID:7565774   PMID:7958915   PMID:8621702   PMID:8798441   PMID:9065434   PMID:9098922   PMID:10222196   PMID:11354513   PMID:11688998  
PMID:11739747   PMID:11988169   PMID:12015964   PMID:12086646   PMID:12114502   PMID:12114522   PMID:12121497   PMID:12151796   PMID:12220541   PMID:12244210   PMID:12477932   PMID:12609977  
PMID:12715102   PMID:12805315   PMID:12843242   PMID:12849998   PMID:12853429   PMID:12871976   PMID:12969258   PMID:14517290   PMID:14519530   PMID:14594818   PMID:14604761   PMID:14604762  
PMID:14622123   PMID:14659479   PMID:15030764   PMID:15076716   PMID:15112319   PMID:15135945   PMID:15229233   PMID:15262987   PMID:15263086   PMID:15371543   PMID:15381254   PMID:15390165  
PMID:15511237   PMID:15652982   PMID:15689550   PMID:15739190   PMID:15753290   PMID:15817708   PMID:15905095   PMID:15923261   PMID:15927180   PMID:16088955   PMID:16141355   PMID:16159392  
PMID:16168389   PMID:16230783   PMID:16251435   PMID:16298471   PMID:16299502   PMID:16330542   PMID:16359811   PMID:16410315   PMID:16421965   PMID:16510265   PMID:16520736   PMID:16632469  
PMID:16641242   PMID:16782881   PMID:16801951   PMID:16891269   PMID:16897752   PMID:16923323   PMID:16952356   PMID:16973918   PMID:16990276   PMID:16997391   PMID:17022948   PMID:17074386  
PMID:17164818   PMID:17325033   PMID:17505916   PMID:17610355   PMID:17638387   PMID:17680988   PMID:17692820   PMID:17920195   PMID:17925456   PMID:17977028   PMID:18055458   PMID:18063565  
PMID:18063805   PMID:18095593   PMID:18172855   PMID:18213625   PMID:18250056   PMID:18252718   PMID:18378685   PMID:18381242   PMID:18386196   PMID:18559891   PMID:18566605   PMID:18586506  
PMID:18636983   PMID:18639611   PMID:18669938   PMID:18710651   PMID:18922788   PMID:19046951   PMID:19047462   PMID:19052216   PMID:19151710   PMID:19164762   PMID:19172190   PMID:19183266  
PMID:19223597   PMID:19272413   PMID:19342597   PMID:19357264   PMID:19360104   PMID:19416748   PMID:19426786   PMID:19540313   PMID:19545278   PMID:19601643   PMID:19602869   PMID:19664625  
PMID:19851832   PMID:19861239   PMID:19891990   PMID:19921094   PMID:19945407   PMID:19968712   PMID:20080871   PMID:20102225   PMID:20127074   PMID:20145658   PMID:20150559   PMID:20168088  
PMID:20346417   PMID:20361314   PMID:20439489   PMID:20534813   PMID:20573957   PMID:20613834   PMID:20688914   PMID:20818076   PMID:20824729   PMID:20852621   PMID:20876357   PMID:20926146  
PMID:21072211   PMID:21123217   PMID:21155252   PMID:21156158   PMID:21171355   PMID:21338685   PMID:21367774   PMID:21382451   PMID:21396965   PMID:21408140   PMID:21414930   PMID:21448293  
PMID:21605499   PMID:21728997   PMID:21740234   PMID:21762679   PMID:21808064   PMID:21819464   PMID:21826657   PMID:21835234   PMID:21890628   PMID:22079318   PMID:22305649   PMID:22419107  
PMID:22445851   PMID:22505719   PMID:22509362   PMID:22543102   PMID:22553039   PMID:22569987   PMID:22616931   PMID:22632974   PMID:22796763   PMID:22841916   PMID:22932066   PMID:22974552  
PMID:23052195   PMID:23110949   PMID:23150431   PMID:23160045   PMID:23223304   PMID:23292070   PMID:23381906   PMID:23382074   PMID:23395171   PMID:23704876   PMID:23716681   PMID:23749289  
PMID:23950594   PMID:24062441   PMID:24064350   PMID:24106266   PMID:24114393   PMID:24121025   PMID:24222346   PMID:24277525   PMID:24292370   PMID:24316406   PMID:24364879   PMID:24597568  
PMID:24773364   PMID:24965890   PMID:25154887   PMID:25170769   PMID:25193019   PMID:25201604   PMID:25231482   PMID:25392083   PMID:25609649   PMID:25687488   PMID:25931508   PMID:25986861  
PMID:26296331   PMID:26365342   PMID:26397995   PMID:26398857   PMID:26440419   PMID:26473326   PMID:26492285   PMID:26546462   PMID:26554229   PMID:26926964   PMID:26996991   PMID:27010597  
PMID:27132084   PMID:27279449   PMID:27530066   PMID:27611779   PMID:27761593   PMID:27771283   PMID:27815155   PMID:27840939   PMID:28051768   PMID:28160495   PMID:28222740   PMID:28230177  
PMID:28236215   PMID:28327356   PMID:28429887   PMID:28469203   PMID:28638088   PMID:28666847   PMID:28743894   PMID:28763438   PMID:28866293   PMID:29330129   PMID:29427172   PMID:29559698  
PMID:29806529   PMID:30507144   PMID:30964189   PMID:31092551   PMID:31253357   PMID:32043504   PMID:32553080   PMID:32554860   PMID:32569665  


Genomics

Candidate Gene Status
Creb1 is a candidate Gene for QTL Memor11
Comparative Map Data
Creb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2965,903,511 - 65,972,562 (+)NCBI
Rnor_6.0 Ensembl971,230,108 - 71,293,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0971,229,753 - 71,298,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0971,277,171 - 71,346,198 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4963,170,785 - 63,234,727 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1963,317,766 - 63,381,709 (+)NCBI
Celera963,310,784 - 63,374,139 (+)NCBICelera
Cytogenetic Map9q32NCBI
CREB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2207,529,737 - 207,605,988 (+)EnsemblGRCh38hg38GRCh38
GRCh382207,529,943 - 207,605,988 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372208,394,686 - 208,470,712 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,102,931 - 208,171,818 (+)NCBINCBI36hg18NCBI36
Build 342208,220,191 - 208,289,074NCBI
Celera2202,156,105 - 202,231,803 (+)NCBI
Cytogenetic Map2q33.3NCBI
HuRef2200,237,266 - 200,313,048 (+)NCBIHuRef
CHM1_12208,400,466 - 208,476,534 (+)NCBICHM1_1
Creb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,571,963 - 64,643,707 (+)NCBIGRCm39mm39
GRCm39 Ensembl164,571,804 - 64,643,707 (+)Ensembl
GRCm38164,532,794 - 64,604,548 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,532,645 - 64,604,548 (+)EnsemblGRCm38mm10GRCm38
MGSCv37164,579,378 - 64,651,122 (+)NCBIGRCm37mm9NCBIm37
MGSCv36164,467,080 - 64,538,824 (+)NCBImm8
Celera165,034,311 - 65,105,954 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.74NCBI
Creb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554577,431,736 - 7,491,149 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554577,424,403 - 7,490,630 (-)NCBIChiLan1.0ChiLan1.0
CREB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B212,891,261 - 212,963,584 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B212,891,261 - 212,958,130 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B94,762,796 - 94,836,304 (+)NCBIMhudiblu_PPA_v0panPan3
CREB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13715,921,214 - 15,978,492 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3715,939,138 - 15,977,556 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3716,804,994 - 16,867,966 (+)NCBI
ROS_Cfam_1.03715,856,953 - 15,919,649 (+)NCBI
UMICH_Zoey_3.13715,802,749 - 15,865,587 (+)NCBI
UNSW_CanFamBas_1.03715,775,840 - 15,838,520 (+)NCBI
UU_Cfam_GSD_1.03715,785,052 - 15,847,761 (+)NCBI
Creb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303164,086,248 - 164,150,269 (+)NCBI
SpeTri2.0NW_0049366313,721,307 - 3,785,346 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CREB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15110,697,408 - 110,771,755 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115110,705,548 - 110,773,037 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215122,245,218 - 122,278,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CREB1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11093,316,774 - 93,395,187 (+)NCBI
ChlSab1.1 Ensembl1093,316,840 - 93,388,832 (+)Ensembl
Creb1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247658,374,160 - 8,436,969 (-)NCBI

Position Markers
D9Wox4  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0971,268,192 - 71,268,442NCBIRnor6.0
Rnor_5.0971,307,519 - 71,307,769UniSTSRnor5.0
RGSC_v3.4963,208,874 - 63,209,124UniSTSRGSC3.4
RGSC_v3.4963,208,873 - 63,209,124RGDRGSC3.4
RGSC_v3.1963,355,855 - 63,356,106RGD
Celera963,348,896 - 63,349,146UniSTS
RH 3.4 Map9538.0RGD
RH 3.4 Map9538.0UniSTS
RH 2.0 Map9608.1RGD
Cytogenetic Map9q32UniSTS
RH140745  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0971,293,425 - 71,293,549NCBIRnor6.0
Rnor_6.01825,363,262 - 25,363,386NCBIRnor6.0
Rnor_5.01825,078,973 - 25,079,097UniSTSRnor5.0
Rnor_5.0971,282,616 - 71,282,740UniSTSRnor5.0
RGSC_v3.4963,234,717 - 63,234,841UniSTSRGSC3.4
RGSC_v3.41825,027,665 - 25,027,789UniSTSRGSC3.4
Celera1823,961,591 - 23,961,715UniSTS
Celera963,374,129 - 63,374,253UniSTS
Cytogenetic Map9q32UniSTS
RH139083  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0971,296,913 - 71,297,044NCBIRnor6.0
Rnor_6.01825,359,783 - 25,359,915NCBIRnor6.0
Rnor_5.01825,075,494 - 25,075,626UniSTSRnor5.0
Rnor_5.0971,279,121 - 71,279,252UniSTSRnor5.0
Celera963,377,610 - 63,377,742UniSTS
Celera1823,958,102 - 23,958,234UniSTS
Cytogenetic Map9q32UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9105522293442944Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92569234292741406Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92748615588333183Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92907507983686404Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)929466970107878528Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93238513377385133Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93764235182642351Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93764235182642351Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)94126103490024806Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94126103498606834Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)941261034102531865Rat
6903941Pur31Proteinuria QTL 310.036total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94657976991579769Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94657976991579769Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94695242783686153Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94724896594124663Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95417754299177542Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95488504176677636Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)96081029882732466Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)961186278106186278Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)96173092382890620Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)96173092382890620Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)96173092382890620Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)963270073107878387Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)966757444112943287Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96745166499920892Rat
1578757Pur6Proteinuria QTL 63.30.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96745166499920892Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)970241351115241351Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)970942881115942881Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1596
Count of miRNA genes:327
Interacting mature miRNAs:449
Transcripts:ENSRNOT00000018326, ENSRNOT00000049654
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 27 34 18 19 18 2 2 74 28 41 11 2
Low 1 16 23 23 23 6 9 7 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_134443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X14788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X60002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X69029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000018326   ⟹   ENSRNOP00000018326
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl971,230,108 - 71,293,435 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000049654   ⟹   ENSRNOP00000049369
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl971,247,781 - 71,293,414 (+)Ensembl
RefSeq Acc Id: NM_031017   ⟹   NP_112279
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,903,728 - 65,967,003 (+)NCBI
Rnor_6.0971,230,108 - 71,293,435 (+)NCBI
Rnor_5.0971,277,171 - 71,346,198 (-)NCBI
RGSC_v3.4963,170,785 - 63,234,727 (+)RGD
Celera963,310,784 - 63,374,139 (+)RGD
Sequence:
RefSeq Acc Id: NM_134443   ⟹   NP_604392
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,921,450 - 65,966,982 (+)NCBI
Rnor_6.0971,247,781 - 71,293,414 (+)NCBI
Rnor_5.0971,277,171 - 71,346,198 (-)NCBI
RGSC_v3.4963,170,785 - 63,234,727 (+)RGD
Celera963,328,586 - 63,374,118 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245065   ⟹   XP_006245127
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0971,229,753 - 71,298,994 (+)NCBI
Rnor_5.0971,277,171 - 71,346,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245066   ⟹   XP_006245128
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,903,621 - 65,972,562 (+)NCBI
Rnor_6.0971,229,899 - 71,298,994 (+)NCBI
Rnor_5.0971,277,171 - 71,346,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245067   ⟹   XP_006245129
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,923,519 - 65,972,562 (+)NCBI
Rnor_6.0971,249,945 - 71,298,994 (+)NCBI
Rnor_5.0971,277,171 - 71,346,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245068   ⟹   XP_006245130
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0971,254,980 - 71,298,994 (+)NCBI
Rnor_5.0971,277,171 - 71,346,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245069   ⟹   XP_006245131
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0971,255,075 - 71,298,994 (+)NCBI
Rnor_5.0971,277,171 - 71,346,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245070   ⟹   XP_006245132
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,943,255 - 65,972,562 (+)NCBI
Rnor_6.0971,269,740 - 71,298,994 (+)NCBI
Rnor_5.0971,277,171 - 71,346,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596651   ⟹   XP_017452140
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0971,229,889 - 71,298,994 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596652   ⟹   XP_017452141
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0971,229,892 - 71,298,994 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084245   ⟹   XP_038940173
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,903,511 - 65,972,562 (+)NCBI
RefSeq Acc Id: XM_039084246   ⟹   XP_038940174
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,903,626 - 65,972,562 (+)NCBI
RefSeq Acc Id: XM_039084247   ⟹   XP_038940175
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,903,621 - 65,945,464 (+)NCBI
RefSeq Acc Id: XM_039084248   ⟹   XP_038940176
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,903,578 - 65,972,562 (+)NCBI
RefSeq Acc Id: XM_039084249   ⟹   XP_038940177
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,928,539 - 65,972,562 (+)NCBI
RefSeq Acc Id: XR_005488972
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2965,903,621 - 65,972,562 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_112279   ⟸   NM_031017
- Peptide Label: isoform B
- UniProtKB: P15337 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_604392   ⟸   NM_134443
- Peptide Label: isoform A
- Sequence:
RefSeq Acc Id: XP_006245127   ⟸   XM_006245065
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006245128   ⟸   XM_006245066
- Peptide Label: isoform X2
- UniProtKB: P15337 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245129   ⟸   XM_006245067
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006245130   ⟸   XM_006245068
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006245131   ⟸   XM_006245069
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006245132   ⟸   XM_006245070
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017452140   ⟸   XM_017596651
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017452141   ⟸   XM_017596652
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000018326   ⟸   ENSRNOT00000018326
RefSeq Acc Id: ENSRNOP00000049369   ⟸   ENSRNOT00000049654
RefSeq Acc Id: XP_038940173   ⟸   XM_039084245
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940176   ⟸   XM_039084248
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038940175   ⟸   XM_039084247
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038940174   ⟸   XM_039084246
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038940177   ⟸   XM_039084249
- Peptide Label: isoform X5
Protein Domains
bZIP   KID

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW