Memor17 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Memor17 (Memory QTL 17) Rattus norvegicus

Symbol: Memor17
Name: Memory QTL 17
RGD ID: 1598849
Previously known as: SR-5
Trait: exploratory behavior trait   (VT:0010471)    
Measurement Type: difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase   (CMO:0002678)    
LOD Score: 2.2
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2949,968,546 - 71,098,346RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0954,885,041 - 76,677,636RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0954,591,357 - 76,457,525RGDRnor5.0
RGSC_v3.4947,035,692 - 68,493,058RGDRGSC3.4
RGSC_v3.1947,037,106 - 68,640,040RGD
Cross Type: intercross
Strains Crossed: SR/JrHsd SS/JrHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Vertebrate Trait

Rat Strain
SR/JrHsd  (IEA)
SS/JrHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genome-wide scan for quantitative trait loci influencing spatial navigation and social recognition memory in Dahl rats. Ruiz-Opazo N and Tonkiss J, Physiol Genomics. 2006 Jul 12;26(2):145-51.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2728Cmklr2chemerin chemokine-like receptor 296458331064617883Rat
61975Ctla4cytotoxic T-lymphocyte-associated protein 496231887462325978Rat
2844Hspe1heat shock protein family E (Hsp10) member 195658991256593000Rat
2862Idh1isocitrate dehydrogenase (NADP(+)) 196653414666563703Rat
620016Mpp4MAGUK p55 scaffold protein 496056973460613035Rat
3044Map2microtubule-associated protein 296772342267981886Rat
2422Crygdcrystallin, gamma D96644205766443668Rat
631406Fzd5frizzled class receptor 596611309666120276Rat
621314Hspd1heat shock protein family D (Hsp60) member 195657919556590011Rat
2395Cps1carbamoyl-phosphate synthase 196861415368737037Rat
631415Ppil3peptidylprolyl isomerase like 395996640559980147Rat
620183Mob4MOB family member 4, phocein95661737456641336Rat
620218Creb1cAMP responsive element binding protein 196590351165972562Rat
628771Abi2abl-interactor 296182718661905703Rat
2421Crygccrystallin, gamma C96645159166453626Rat
2423Crygecrystallin, gamma E96642992466432521Rat
620457Stk17bserine/threonine kinase 17b95530748555338085Rat
708420Plcl1phospholipase C-like 195690157357238782Rat
620148Sf3b1splicing factor 3b, subunit 195649240356532300Rat
620123Icosinducible T-cell co-stimulator96236807562406900Rat
620484Nop58NOP58 ribonucleoprotein96112093961144810Rat
621442Nrp2neuropilin 296412281564238007Rat
69416Lancl1LanC like glutathione S-transferase 196851505268548646Rat
620486Erbb4erb-b2 receptor tyrosine kinase 496952373370596743Rat
1303213Pgap1post-GPI attachment to proteins inositol deacylase 195597557456044325Rat
1303159Maip1matrix AAA peptidase interacting protein 195897890158986831Rat
2299Cd28Cd28 molecule96216632462194674Rat
1304808Ino80dINO80 complex subunit D96444707564514013Rat
620847CflarCASP8 and FADD-like apoptosis regulator96018533860236173Rat
620612Pth2rparathyroid hormone 2 receptor96670605066810601Rat
735072Wdr12WD repeat domain 1296147549861502762Rat
620945Casp8caspase 896026386360312542Rat
1306822Carfcalcium responsive transcription factor96150236861552433Rat
621798Dnah7dynein, axonemal, heavy chain 795496023555266529Rat
620915Trak2trafficking kinesin protein 296034853160414036Rat
735221Cyp20a1cytochrome P450, family 20, subfamily a, polypeptide 196175580461805123Rat
71082Bmpr2bone morphogenetic protein receptor type 296119271861307280Rat
735110Ica1lislet cell autoantigen 1-like96141095961469884Rat
735129Bzw1basic leucine zipper and W2 domains 195993067259944468Rat
1306919Sumo1small ubiquitin-like modifier 196107879061108697Rat
1305739Adam23ADAM metallopeptidase domain 2396486264965009718Rat
1307321Slc39a10solute carrier family 39 member 1095483684154960325Rat
1306205Cdk15cyclin-dependent kinase 1596071078760803638Rat
1309930Spats2lspermatogenesis associated, serine-rich 2-like95931994959493864Rat
1306705Tmem237transmembrane protein 23796053334860569253Rat
1309976Unc80unc-80 homolog, NALCN channel complex subunit96801194068190135Rat
1304775Ccdc150coiled-coil domain containing 15095579354455897341Rat
1306658Nabp1nucleic acid binding protein 195009855250133982Rat
1306029Klf7KLF transcription factor 796543368365526372Rat
1310683Ccnyl1cyclin Y-like 196607172166121742Rat
1309752Hycc2hyccin PI4KA lipid kinase complex subunit 296005688360129176Rat
1308686Ikzf2IKAROS family zinc finger 297104603871191296Rat
1308387Raph1Ras association (RalGDS/AF-6) and pleckstrin homology domains 196190747661990170Rat
620528Aox1aldehyde oxidase 195957962159658772Rat
1310329Nif3l1NGG1 interacting factor 3 like 195998010160001490Rat
1311885Hsfy2heat shock transcription factor, Y linked 295818241558183828Rat
1311469Clk1CDC-like kinase 195994777459959002Rat
1311975Aox4aldehyde oxidase 495976123859818169Rat
1311527Mars2methionyl-tRNA synthetase 2, mitochondrial95672040856729991Rat
1311415Eef1b2eukaryotic translation elongation factor 1 beta 296458016364582737Rat
1307874Mdh1bmalate dehydrogenase 1B96512037065168008Rat
1307883Fastkd2FAST kinase domains 296516614865188184Rat
1307304Rftn2raftlin family member 295665161756707830Rat
1307676Fam117bfamily with sequence similarity 117, member B96134028461418531Rat
1307151Plekhm3pleckstrin homology domain containing M396616623366325332Rat
1308839Tmeff2transmembrane protein with EGF-like and two follistatin-like domains 295044594750733473Rat
2011Acadlacyl-CoA dehydrogenase, long chain96833398168372149Rat
1306941C9h2orf69similar to human chromosome 2 open reading frame 6995894982158958456Rat
1308450Sgo2shugoshin 295954860559573229Rat
1309185Gtf3c3general transcription factor IIIC subunit 395588225255943037Rat
1310372Als2alsin Rho guanine nucleotide exchange factor ALS296061318260686394Rat
1562029Kiaa2012KIAA2012 homolog96096739861076596Rat
1359668Aox2aldehyde oxidase 295982840359916175Rat
1560005Zdbf2zinc finger, DBF-type containing 296467297464748446Rat
1562431Pced1bl1PC-esterase domain containing 1B like 197085955470861542Rat
1559449StradbSTE20 related adaptor beta96041418260433084Rat
1562399Rps2-ps15ribosomal protein S2, pseudogene 1596069961560700505Rat
1561893Ankrd44ankyrin repeat domain 4495612674656427661Rat
1564239Dbi-ps3diazepam binding inhibitor, acyl-CoA binding protein, pseudogene 396133652861336927Rat
1562369Satb2SATB homeobox 295834802758534256Rat
1359328Aox3aldehyde oxidase 395966478459749701Rat
1359509Coq10bcoenzyme Q10B95655375156573671Rat
1359345Cavin2caveolae associated protein 295030207950314096Rat
1311269Tyw5tRNA-yW synthesizing protein 595896110058979188Rat
1559527Bollboule homolog, RNA binding protein95673489056859917Rat
1310737Ndufb3NADH:ubiquinone oxidoreductase subunit B396012924060139452Rat
1564890Rperibulose-5-phosphate-3-epimerase96819102768211295Rat
1311844Orc2origin recognition complex, subunit 296000163160038301Rat
1565450C2cd6C2 calcium dependent domain containing 696043492660530842Rat
1586604Tmem258btransmembrane protein 258 B95645037356450755Rat
1564820Kctd18potassium channel tetramerization domain containing 1895950222059566857Rat
1586353Crygfcrystallin, gamma F96744826567450429Rat
1588771Cpocarboxypeptidase O96531999665338250Rat
1590798Pum3-ps2pumilio RNA-binding family member 3, pseudogene 296848084668482298Rat
1590799Kansl1lKAT8 regulatory NSL complex subunit 1-like96821115168316992Rat
1590802Rpl6-ps7ribosomal protein L6, pseudogene 795908227059083124Rat
1590803Rpl11-ps6ribosomal protein L11, pseudogene 695646902356469614Rat
1590804Eno1-ps2enolase 1, pseudogene 295473030254750752Rat
1590805Clip1-ps1CAP-GLY domain containing linker protein 1, pseudogene 195409906354102686Rat
1590806Cct6a-ps1chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 195333839953339815Rat
1587872Pals1-ps1protein associated with LIN7 1, MAGUK p55 family member, pseudogene 195450025654502541Rat
1591348Mettl6-ps1methyltransferase like 6, pseudogene 195151474651515605Rat
1590771Nono-ps13non-POU domain containing, octamer-binding, pseudogene 1395304950253055409Rat
1586666C9h2orf66similar to human chromosome 2 open reading frame 6695594580655949855Rat
1359362Flacc1flagellum associated containing coiled-coil domains 196031558160343692Rat
1584991Crygbcrystallin, gamma B96646146066463520Rat
1584992Pard3bpar-3 family cell polarity regulator beta96303843564067178Rat
1359670Ndufs1NADH:ubiquinone oxidoreductase core subunit S196454643064579751Rat
1593480Paics-ps7phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 796290127462922952Rat
1596173Set-ps16Set nuclear proto-oncogene, pseudogene 1696110895261113900Rat
1592067Pikfyvephosphoinositide kinase, FYVE-type zinc finger containing96656374766657873Rat
1595217Crygacrystallin, gamma A96648217666484638Rat
1596909Tcf19-ps1transcription factor 19, pseudogene 196698752466988262Rat
1593244Hecw2HECT, C2 and WW domain containing E3 ubiquitin protein ligase 295535946255753106Rat
1594799Nbeal1neurobeachin-like 196157515461743896Rat
1590313Psma7-ps3proteasome 20S subunit alpha 7, pseudogene 396241270962415587Rat
1598796Myl1myosin, light chain 196843751468458256Rat
2318998Cacybp-ps1calcyclin binding protein, pseudogene 195431312554313795Rat
2321317Rpl37-ps5ribosomal protein L37, pseudogene 596441747564417847Rat
2320870Hmga1-ps2high mobility group AT-hook 1, pseudogene 296571420665715579Rat
2320917Dytndystrotelin96503737865098549Rat
2321064Cox5b-ps1cytochrome c oxidase subunit 5B, pseudogene 196479269464793077Rat
2321905Fzd7frizzled class receptor 796093143360934252Rat
2323511Cct6a-ps16chaperonin containing TCP1 subunit 6A, pseudogene 1695325090653252183Rat
2323551Srek1-ps1splicing regulatory glutamic acid and lysine rich protein 1, pseudogene 196757132867632585Rat
2323628Tmem19-ps1transmembrane protein 19, pseudogene 195275207852753081Rat
2323675Cyb5d1-ps1cytochrome b5 domain containing 1, pseudogene 195240881552409577Rat
2323836Ccdc126-ps1coiled-coil domain containing 126, pseudogene 195124491251245507Rat
6498974Nelfe-ps1negative elongation factor complex member E, pseudogene 195422936854231747Rat
6501057LOC100909946uncharacterized LOC10090994696019500760199453Rat
7505088LOC102549484uncharacterized LOC10254948495889970458949945Rat
7651604Mettl21amethyltransferase 21A, HSPA lysine96593425365999964Rat
7574954LOC102549320uncharacterized LOC10254932095852723658603337Rat
7626358LOC102548410uncharacterized LOC10254841096438316264410799Rat
7640284Aasdhppt-ps1aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase, pseudogene 195073524950746852Rat
7594970Nop16-ps2NOP16 nucleolar protein, pseudogene 296453634964546088Rat
7595922LOC102548093uncharacterized LOC10254809396275091462757597Rat
7543919Npm1-ps7nucleophosmin 1, pseudogene 795056244350587615Rat
7688659LOC102552040uncharacterized LOC10255204096643336666440952Rat
7736852LOC102547711uncharacterized LOC10254771196204614362050985Rat
7709066Banf1-ps3BAF nuclear assembly factor 1, pseudogene 396009990260100455Rat
9134966LOC103690538uncharacterized LOC10369053895988788859901999Rat
9179481LOC103690547glycine cleavage system H protein, mitochondrial pseudogene95663505656636545Rat
9211165LOC103690543uncharacterized LOC10369054396557369165585909Rat
9235481Fam237afamily with sequence similarity 237 member A96502431265035051Rat
9375952LOC103690545small integral membrane protein 7-like96582536165826864Rat
11362092LOC108351929uncharacterized LOC10835192995048922750559755Rat
11454381LOC108351943uncharacterized LOC10835194396522571165235289Rat
11468746LOC108352000glyceraldehyde-3-phosphate dehydrogenase pseudogene95808334958084426Rat
11470202LOC10835193660S ribosomal protein L30-like95935380059354253Rat
11446793LOC10835202740S ribosomal protein S28-like95151597051516251Rat
11365277Tmsb10l3thymosin beta 10 like 394997482349975501Rat
11396265LOC108351945uncharacterized LOC10835194596575070565758684Rat
11385622LOC108351940uncharacterized LOC10835194096244344262466139Rat
11390134LOC108351933uncharacterized LOC10835193395707161657113442Rat
11391487LOC108351932uncharacterized LOC10835193295632554556333506Rat
11403437Rpl21l4ribosomal protein L21 like 495982107659823671Rat
11383155Rpl31l12ribosomal protein L31 like 1295583391155834622Rat
11476915LOC108351941dnaJ homolog subfamily A member 1 pseudogene96516520265166696Rat
11489282LOC10835200740S ribosomal protein S10 pseudogene97041881470419577Rat
11493513LOC108351935uncharacterized LOC10835193595910533959149851Rat
41234631LOC120094970U6 spliceosomal RNA95042574950425855Rat
41278460LOC120094801uncharacterized LOC12009480196139447061398897Rat
41384701LOC120094933small nucleolar RNA SNORA1796443688164436969Rat
41327220LOC120094983U6 spliceosomal RNA95303196253032064Rat
41260367LOC120094689uncharacterized LOC12009468995934920359351098Rat
41388248LOC120094910small nucleolar RNA SNORA1796838151668381647Rat
41261015LOC120094798uncharacterized LOC12009479896090520160907409Rat
41364019LOC120094895small nucleolar RNA SNORA5196209395062094058Rat
41094824LOC120094693uncharacterized LOC12009469396559217365596677Rat
41096022LOC120094690uncharacterized LOC12009469095965508059658278Rat
41096178Rps7-ps13ribosomal protein S7, pseudogene 1395087190650872667Rat
41148168Snora41small nucleolar RNA, H/ACA box 4196458207064582201Rat
41176457LOC120094945U6atac minor spliceosomal RNA96986598769866117Rat
41189416LOC120094799uncharacterized LOC12009479996091928260922015Rat
41122244LOC120094911small nucleolar RNA SNORA1796050905460509188Rat
41123000LOC120094847uncharacterized LOC12009484795398840053993546Rat
41180480LOC120094929small nucleolar RNA SNORA1795209028852090429Rat
41344301Trnav-aac15transfer RNA valine (anticodon AAC) 1596041537860415450Rat
41125672LOC120094794uncharacterized LOC12009479495690850256915395Rat
41185075LOC120094796uncharacterized LOC12009479696034380860368188Rat
41400105LOC120094804uncharacterized LOC12009480496998441869994916Rat
41128145Snord11bsmall nucleolar RNA, C/D box 11B96113716861137247Rat
41160946Snord70small nucleolar RNA, C/D box 7096112597461126060Rat
41294387LOC120094695uncharacterized LOC12009469596606187866071873Rat
41107517LOC120094903small nucleolar RNA SNORA4895032157750321728Rat
41273883LOC120094688uncharacterized LOC12009468895889810858899892Rat
41296899Trnap-agg73transfer RNA proline (anticodon AGG) 7396652953766529617Rat
41352736LOC120094958U2 spliceosomal RNA95998629659986483Rat
41377830LOC120094880U7 small nuclear RNA95842251458422570Rat
41015968LOC120094683uncharacterized LOC12009468395017283950187261Rat
40952034LOC120094967U4 spliceosomal RNA96703546867035644Rat
40976196LOC120094959U2 spliceosomal RNA95257495452575147Rat
41013560LOC120094932small nucleolar RNA SNORA1795970150259701601Rat
40979013LOC120094797mitochondrial intermembrane space import and assembly protein 40-like96058484160585260Rat
40959969LOC120094803Kruppel like factor 796543368365526372Rat
40960633Snord51small nucleolar RNA, C/D box 5196458173164581808Rat
41004670Snord11small nucleolar RNA, C/D box 1196113771561137798Rat
40961944Snord70bsmall nucleolar RNA, C/D box 70B96112674561126828Rat
40939110LOC120094918small nucleolar RNA SNORA1796875681568756940Rat
40943289LOC120094696uncharacterized LOC12009469696630022366302108Rat
40971008LOC120094685uncharacterized LOC12009468595484227554876577Rat
41242467LOC120094697uncharacterized LOC12009469797064431670744273Rat
41313489LOC120094912small nucleolar RNA SNORA1795899507858995205Rat
41049662LOC120094686uncharacterized LOC12009468695533793455363100Rat
41076818LOC120094795uncharacterized LOC12009479596045159160485960Rat
41315872LOC120094878U7 small nuclear RNA96836621168366273Rat
41052886LOC120094872U6 spliceosomal RNA95954434359544444Rat
41058289LOC120094899small nucleolar RNA SNORA4896112427761124421Rat
41300716LOC120094969U4 spliceosomal RNA95031778850317913Rat
41034877Ptp4a1-ps5protein tyrosine phosphatase 4A1, pseudogene 595973618059736701Rat
41335151Atp5mc2-ps1ATP synthase membrane subunit c locus 2, pseudogene 196174626061746688Rat
41235983LOC120094692uncharacterized LOC12009469296214346762149952Rat
41074009Trnaa-agc29transfer RNA alanine (anticodon AGC) 2995010982550109905Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10403D9Wox811896647532866475449Ratregion
10404D9Mit219896643705266437242Ratregion
10411D9Mgh414196745134667451485Ratregion
34013D9Mit314495816286358163035Ratregion
36147D9Rat1514596538378965383934Ratregion
37218D9Rat6911696937159569371715Ratregion
37522D9Rat8524696642120366421453Ratregion
35172D9Rat1912596228760862287724Ratregion
37094D9Rat15620196411687264117084Ratregion
36406D9Mgh914196082718760827328Ratregion
36556D9Rat1018297109815771098346Ratregion
34771D9Rat1817596246215362462332Ratregion
34815D9Rat1617596138143461381613Ratregion
34862D9Rat2315495641096256411096Ratregion
35575D9Rat2213595503543555035576Ratregion
35809D9Rat1214696785297367853119Ratregion
35833D9Rat2014195006217650062324Ratregion
35843D9Rat1312796569118865691299Ratregion
39706D9Rat12220095701844457018665Ratregion
39872D9Rat11920895107333651073542Ratregion
38056D9Rat9820095967979959680004Ratregion
38066D9Rat6520496450779964507997Ratregion
40706D9Rat11822396036983760370066Ratregion
38626D2Rat17113796770325867703293Ratregion
40304D9Rat12114095099769550997861Ratregion
39178D9Rat9321795921443459214645Ratregion
39362D9Rat9220494996854649968732Ratregion
39502D9Rat14620597096039070960606Ratregion
42887D9Rat17621296660447766604697Ratregion
42888D9Rat17312296757594967576067Ratregion
42889D9Rat17421296984477269844966Ratregion
42891D9Rat17220697107579871076004Ratregion
41514D9Rat11715596346956963469726Ratregion
40896D9Rat11520096940155969401759Ratregion
40916D9Rat12322495815701458157242Ratregion
41088D9Rat12020895314156553141785Ratregion
41554D9Rat11616796432949264329651Ratregion
44552D9Wox2113696750902367509080Ratregion
44602D9Got5818395260444052604625Ratregion
44603D9Wox1424295305993353060173Ratregion
44604D9Got6021295660337256603584Ratregion
44605D9Got5922395654765856547881Ratregion
44606D9Got6213795710749157107628Ratregion
44607D9Got6118795808840058088587Ratregion
44609D9Got6322995996728459967513Ratregion
44610D9Got6420696422914764229355Ratregion
44611D9Got6722396324139963241622Ratregion
44612D9Got6619996313226163132460Ratregion
44614D9Got6916096449669764496857Ratregion
44615D9Got6520296426994164270143Ratregion
44616D9Got6811896542110465421222Ratregion
44617D9Wox428096594175965942010Ratregion
44618D9Got7023296584151565841747Ratregion
44619D9Got7116496623641966236583Ratregion
44620D9Got7319096734105967341249Ratregion
44621D9Got7219896815839068158588Ratregion
44622D9Got7416397017264470172807Ratregion
44624D9Got7517697075469770754873Ratregion
44625D9Got7617897072303770723215Ratregion
44626D9Got7714397045995370460096Ratregion
60654D9Got13511095889750258897612Ratregion
60654D9Got13511095889750258897772Ratregion
60666D9Got5727795411829754118571Ratregion
45516D17Got10816296290804662908187Ratregion
62512D9Uia218396487016764870352Ratregion
62513D9Uia313896441130964411447Ratregion
62516D9Uia428196207227562072556Ratregion
66388D9Mco1026295367008853670350Ratregion
66421D9Mco220095644711656447294Ratregion
66433D9Mco820096435632364356550Ratregion
66549D9Uia730396668938266689686Ratregion
66550D9Uia824795648057156480818Ratregion
67302D9Arb215696526294565263101Ratregion
1578967D10Chm4622496829682268297046Ratregion
1578977D10Chm6524196778450967784750Ratregion
1579019D10Chm4530496797999367980297Ratregion
1579108D10Chm6429196798000667980297Ratregion
1627002D9Mco522596435636664356591Ratregion
1627488D9Mco322496435636664356590Ratregion
1629282D9Wox1327895723740357237681Ratregion
1639073D9Got24122896118757261187800Ratregion
1640764D9Got23829796443847564438771Ratregion
1640764D9Got23829796443847564438796Ratregion
1636264D9Got21720095404582754046027Ratregion
1633843D9Wox308796798123167981318Ratregion
2302881D9Mco7324895068715250687400Ratregion
2302903D9Mco7924195718945557189696Ratregion
2302909D9Mco8019495740292457403118Ratregion
2302913D9Mco7621695662771356627933Ratregion
2302929D9Mco7817395689781656897989Ratregion
2302939D9Mco8119195750480057504991Ratregion
2302963D9Mco7717795677711256777289Ratregion
2302967D9Mco7595652412256524338Ratregion
7206016Nrp26796413894664139013Ratregion
7193091AA89324916496653388966534053Ratregion
5038810RH12734621595496048554960700Ratregion
5036201D1Mit46621796510606865106285Ratregion
5038904RH12739922095530759555307815Ratregion
7206512UniSTS:54680092796458562264586549Ratregion
7206688UniSTS:54753922495030327950303503Ratregion
5036573AU04847316396781909967819141Ratregion
5037195RH8050323695835012158350357Ratregion
5033939RH14068821695852836758528583Ratregion
5033947RH14072117296653447066534642Ratregion
5033953RH14074512596596699265967117Ratregion
5033953RH14074512596596699265967117Ratregion
5028839RH14252514596822740368227551Ratregion
5028975RH14303617896147982261480001Ratregion
5034490BF41582514295057023150570373Ratregion
5026666RH13307621196140870561408916Ratregion
5034724BF39162112095043516150435281Ratregion
5032241AI83986710596190550561905610Ratregion
5027189C789888895898438158984469Ratregion
5029801BF39396813395538007155380204Ratregion
5029849AW53044021396837143068371643Ratregion
5032689RH13493420395530683055307033Ratregion
5030029BF4009099095594644755946537Ratregion
5032805RH13536416196611516066115321Ratregion
5030085BE09815715096191001661910166Ratregion
5030139BE10436416696114927061149436Ratregion
5027749RH9459010096797816467978264Ratregion
5033275RH13823518295556483155565013Ratregion
5025408RH12820015095665319556653345Ratregion
5025598RH12893819996107742961077628Ratregion
5030811BE12029919596533084865331043Ratregion
5030851AA95631613195951710459517235Ratregion
5033561RH13927514496644078566440929Ratregion
5025796RH12969818996843756368437752Ratregion
5031093BF40611320396499754364997746Ratregion
5031101BF40620924796420431864204564Ratregion
5031183BF41380910696142598461426090Ratregion
5054971RH14353116296500634365006505Ratregion
5054999RH14354711696952482069524936Ratregion
5051246RH13452319296190537861905570Ratregion
5053631RH14276018896155126361551451Ratregion
5054075RH14301611195495791754958028Ratregion
5054219RH14309917796656420366564380Ratregion
5059538BE09723015896421915964219317Ratregion
5055897RH14406617496533802065338194Ratregion
5056209RH14424615096329520263295352Ratregion
5056217RH14425123595597107355971309Ratregion
5052428AU044539095303611153036345Ratregion
5058104BI27755715496843761068437764Ratregion
5055379RH14376715795661787556618032Ratregion
5055665RH14393212395852736258527485Ratregion
5049964RH13378321595657548456575699Ratregion
5050000RH13380422096141372061413940Ratregion
5059118BE10286017696098763360987809Ratregion
5057656BF39242822796952811669528343Ratregion
5050740RH13423121396648223366482446Ratregion
5050792RH13426119997104618571046384Ratregion
5053661RH14277814395597506655975209Ratregion
5050094RH13385920696093535460935560Ratregion
5054171RH14307128695993189859932183Ratregion
5050180RH13390820495030250350302705Ratregion
5050584RH13414018496130150461301688Ratregion
5050790RH13426020996616634366166552Ratregion
5053295RH14256617495066394950664123Ratregion
5051789RH9465918596219159662191782Ratregion
5050962RH13435921396454641264546625Ratregion
5044230RH13048421195612688456127095Ratregion
5044256RH13049918695649120956491395Ratregion
5044380RH13056921396656920566569418Ratregion
5041116RH12867224995994783959948088Ratregion
5045716RH13133821395896123758961450Ratregion
5044590RH13069118095994236959942549Ratregion
5047572RH13240519695818263258182828Ratregion
5046124RH13157215296023539560235547Ratregion
5046124RH13157215296023539560235547Ratregion
5047734RH13249821996147559361475812Ratregion
5047894RH13259018695694963956949825Ratregion
5047928RH13261020796518693265188085Ratregion
5049714RH13363919196023412660234317Ratregion
5049720RH13364319896309597663096174Ratregion
5049784RH13368019896851511268515310Ratregion
5049792RH13368421196023676160236972Ratregion
5039840RH12793716595994433659944501Ratregion
5039564RH12777818696034859760348783Ratregion
5042968RH12975218296240660762406789Ratregion
5043238RH12991118395664090956641092Ratregion
7191239Fzd519796611785966118056Ratregion
5043336RH12996820496006011760060321Ratregion
7192206Fzd516796611814366118310Ratregion
5042832RH12967119196405604164056232Ratregion
5042978RH12975821595950243159502646Ratregion
5073972RH13774513096006180660061936Ratregion
5075386RH13856423896645166366451901Ratregion
5075644RH13871323996190328361903522Ratregion
5074346RH13796420896139712261397330Ratregion
5074370RH13797820796115075961150966Ratregion
5076134RH13899912696445340864453534Ratregion
5076242RH13906221096190842361908633Ratregion
5076278RH13908313296597048065970612Ratregion
5076062RH13895720995664072056640929Ratregion
5075700RH13874616196610778966107950Ratregion
5075704RH13874813296190185061901982Ratregion
5077096RH13955820696500946965009675Ratregion
5077890RH14001918796035091860351105Ratregion
5077900RH14002520596053663560536840Ratregion
5078082RH14013320096597220365972403Ratregion
5078082RH14013320096597220365972403Ratregion
5076486RH13920314795951160659511753Ratregion
5079892RH14126318095333847853338658Ratregion
5078618RH14044819996821087968211078Ratregion
5079898RH14126618196130076461300945Ratregion
5078274RH14024521395664098256641195Ratregion
5072978RH13716418495672358056723764Ratregion
5073102RH13723819696653417366534369Ratregion
5070998RH13482721895999977459999992Ratregion
5070588RH13458819496474794764748141Ratregion
5072914RH13712718195491272054912901Ratregion
5073712RH13759516595569056555690730Ratregion
5074616RH13811912196804694568047066Ratregion
5074616RH13811912196804694568047066Ratregion
5063396BF39885516396820856368208726Ratregion
5063478BF3989069095986263159862721Ratregion
5066680AU04821416496598228665982450Ratregion
5067480AU04771927395356466753564940Ratregion
5067816AU04751724895937485159375136Ratregion
5067858AU04749317295110741251107584Ratregion
5068006AU04740616995069253150692695Ratregion
5068134AU04732714296333323163333373Ratregion
5068190AU04729421396920130069201513Ratregion
5070301RH9458810096642963766429737Ratregion
5069128AU04670626795462972854629995Ratregion
5060144AI07244718195723712757237308Ratregion
5061914BE11200517796018760760187784Ratregion
5063618BE10785719396139017361390366Ratregion
5065130AW53601115996130649061306649Ratregion
5065286BE12138615195569935255699503Ratregion
5062192BF39754921096423547264235682Ratregion
5065476BE11562715995670665156706810Ratregion
5061872AW53395215995961488659615047Ratregion
5063706BF40457622695927760659277832Ratregion
5060440BE11007517595590918155909356Ratregion
5062294BE10649016195951486059515021Ratregion
5062328BF40310315496130628161306435Ratregion
5062376BF39785012296821430368214425Ratregion
5064050BE12055915796452628964526446Ratregion
5064156BE12068717296380167363801845Ratregion
5065856AA99718618695590902155909207Ratregion
5061152BI29311121695951096459511180Ratregion
5062834BI29510320196240633462406536Ratregion
5062910AA95553320696423769264237898Ratregion
5066116BF41343211195492931054929421Ratregion
5066118BF41344121096451457464514886Ratregion
5064676BF39954921295043383350434045Ratregion
5066410AU04837317696231536862315544Ratregion
5061352BF39629115396421102964211182Ratregion
5061416BF39637312696597383265973958Ratregion
5064916BF39991815996191208961912248Ratregion
5084264AI16924415096021029360210443Ratregion
5086222BQ21191117095989087759891047Ratregion
5087189BE11729316896189491861895086Ratregion
5086396BQ20487715795657372856573885Ratregion
5087751Crygf16696642995266430118Ratregion
5083353AA81841911895663941356639531Ratregion
5089499AU04919213596150788361508018Ratregion
5083763AI00978121696130498161305197Ratregion
5083934AA89324920596653384866534053Ratregion
5089651AU04928217596840781668407991Ratregion
5090419AU04973918495649343656493620Ratregion
5084154AI01193513096102275861022888Ratregion
5081607BE11756615096109568161095831Ratregion
5087213BQ20853118495988807459888258Ratregion
5081901BE11870116396597549865975661Ratregion
5084788AI22920419996543925465439453Ratregion
5085008AA89139617896454250564542683Ratregion
5087749Crygb13496646152366461657Ratregion
5087787D1Bwg0212e15895427932554279503Ratregion
5080890RH14184218295992424259924424Ratregion
5085236BM38995621895885680358857021Ratregion
5085272AI17604016096056844260568602Ratregion
5090485AU04977817095713788657138056Ratregion
5090591AU04984327697080885970809135Ratregion
5090089AU04954318097059374670593927Ratregion
5090287AU04966126295917957659179839Ratregion
5085928AI17919615996661262466612783Ratregion
5084414AA94607522796019602460196251Ratregion
5084668AI1778939996444734364447442Ratregion
5086365BF40217711796114536161145478Ratregion
5084952AI41184114496174352461743668Ratregion
5084964AI10508210196056941260569513Ratregion
5083021BF39067515296406661564066767Ratregion
5081402AI50121318496500734265007526Ratregion
5081533BE11720316696543597665436142Ratregion
5083449BE10003720796173795461738161Ratregion
5081877BE11860920595535949255359697Ratregion
5085862BM38367218095937325059373430Ratregion
5085976AA84899012396061333260613455Ratregion
5083735AI23773711296199639861996510Ratregion
5084004AI01158712096648644266486562Ratregion
5503148SF3B1-1095650592456506615Ratregion
5503504UniSTS:463202164896744856867450216Ratregion
5503510DNAH7__476041395496025354960666Ratregion
5507541STS-Z41083095579543755796518Ratregion
5503230UniSTS:237290095333869153338954Ratregion
5503230UniSTS:237290096148087461481369Ratregion
5503906Crygc096645180866453385Ratregion
5504149UniSTS:25920425396645173566453312Ratregion
5504157Cryge154696744864167450187Ratregion
5504346D11S3330095122376851224061Ratregion
5505005Fzd718696093279760932983Ratregion
5504622PMC316619P258696093270960933295Ratregion
5506100UniSTS:49835814595530820455308349Ratregion
5506111UniSTS:49839616396423779864237961Ratregion
5506138Satb28195834834558348426Ratregion
5506717ACADL12696836261168362737Ratregion
5499561AI8525619695013848050138576Ratregion
5499701UniSTS:23414410496610655166106655Ratregion
5504151UniSTS:25920328796646157066463204Ratregion
5504692PMC55400P26996653662266537280Ratregion
5501960MARC_21133-21134:1025201105:194196375744463758385Ratregion
5502879Fzd5096611907666120205Ratregion
5502247AA79289324796043254560432792Ratregion
6903883D9Mco10323795047329250473531Ratregion
6903886D9Mco10420095217623152176433Ratregion
6903888D9Mco10521395228303952283252Ratregion
6903890D9Mco10621595318488153185096Ratregion
6903892D9Mco10723096152910161529521Ratregion
6903892D9Mco10723096152929161529521Ratregion
6903894D9Mco10816496680517166805335Ratregion
6903896D9Mco10919196701993467020125Ratregion
Position Markers

Flank 1: (D9Rat92)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2949,968,546 - 49,968,732 (+)MAPPER
Rnor_6.0954,885,041 - 54,885,226NCBI
Rnor_5.0954,591,357 - 54,591,542UniSTS
RGSC_v3.4947,035,693 - 47,035,878UniSTS
RGSC_v3.4947,035,692 - 47,035,878RGD
RGSC_v3.1947,037,106 - 47,037,292RGD
Celera947,615,598 - 47,615,783UniSTS
SHRSP x BN Map941.0298UniSTS
SHRSP x BN Map941.0298RGD
FHH x ACI Map935.67RGD
Peak: (D9Mit5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2977,813,894 - 77,814,038 (+)MAPPER
Rnor_6.0990,024,661 - 90,024,806NCBI
Rnor_5.0989,765,913 - 89,766,058UniSTS
RGSC_v3.4975,633,467 - 75,633,613RGD
RGSC_v3.4975,633,468 - 75,633,613UniSTS
RGSC_v3.1975,798,653 - 75,798,798RGD
Celera975,378,443 - 75,378,588UniSTS
RH 3.4 Map9757.3RGD
RH 3.4 Map9757.3UniSTS
RH 2.0 Map9794.6RGD
SHRSP x BN Map952.3698RGD
Cytogenetic Map9q33UniSTS
Flank 2: (D9Rat10)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2971,098,157 - 71,098,346 (+)MAPPER
Rnor_6.0976,677,448 - 76,677,636NCBI
Rnor_5.0976,457,337 - 76,457,525UniSTS
RGSC_v3.4968,492,870 - 68,493,058UniSTS
RGSC_v3.4968,492,869 - 68,493,058RGD
RGSC_v3.1968,639,852 - 68,640,040RGD
Celera968,553,309 - 68,553,497UniSTS
RH 3.4 Map9647.6RGD
RH 3.4 Map9647.6UniSTS
RH 2.0 Map9669.8RGD
SHRSP x BN Map948.9598RGD
FHH x ACI Map945.67RGD
Cytogenetic Map9q32UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
6903937Bp356Blood pressure QTL 3560.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94790220852283252Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1578659Tspe1Trichinella spiralis expulsion QTL 14.8parasite quantity (VT:0010441)logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)96138143465691299Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general parental S allele was responsible for improved cognitive performance 1581615
qtl_statistics_details social-investigatory behavior involved direct contact while sniffing, nosing, close following, pawing, grooming or inspecting the body surface 1581615