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Gene: Ica1l (islet cell autoantigen 1-like) Rattus norvegicus

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Symbol:

Ica1l

Name:

islet cell autoantigen 1-like

RGD ID:

735110

Description:

Predicted to enable protein domain specific binding activity. Predicted to be involved in regulation of transport. Predicted to act upstream of or within spermatid development. Predicted to be located in acrosomal vesicle. Predicted to be active in Golgi apparatus. Orthologous to human ICA1L (islet cell autoantigen 1 like); INTERACTS WITH bisphenol A; cadmium dichloride; fenvalerate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

amyotrophic lateral sclerosis 2 chromosomal region candidate gene 15 protein homolog; Ica69-related protein; islet cell autoantigen 1, 69kDa-like; islet cell autoantigen 1-like protein; LOC316432

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ICA1L (islet cell autoantigen 1 like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ica1l (islet cell autoantigen 1-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ica1l (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ICA1L (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ICA1L (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ica1l (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ICA1L (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ICA1L (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ica1l (islet cell autoantigen 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ICA1L (islet cell autoantigen 1 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ica1l (islet cell autoantigen 1-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ical1 (islet cell autoantigen 1-like)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	ICA69	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ric-19	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	68,906,148 - 68,964,078 (-)	NCBI		GRCr8
mRatBN7.2	9	61,410,959 - 61,469,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,412,091 - 61,470,134 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	69,914,281 - 69,950,389 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,029,835 - 75,065,943 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,348,547 - 73,384,653 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	66,788,094 - 66,848,958 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	66,790,047 - 66,845,403 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	58,549,961 - 58,588,146 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	58,696,942 - 58,735,128 (-)	NCBI
Celera	9	58,848,507 - 58,883,908 (-)	NCBI		Celera
Cytogenetic Map	9	q31-q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune lymphoproliferative syndrome type 2B (ISO)

Autoimmune Lymphoproliferative Syndrome, Type V (ISO)

common variable immunodeficiency 1 (ISO)

coronary artery disease (ISO)

Neurodevelopmental Disorders (ISO)

primary pulmonary hypertension (ISO)

Pulmonary Arterial Hypertension (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butan-1-ol (ISO)

cadmium dichloride (EXP)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

D-glucose (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

fenvalerate (EXP)

folic acid (ISO)

fucoxanthin (ISO)

glucose (ISO)

hydrogen peroxide (EXP,ISO)

L-methionine (ISO)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methylmercury chloride (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

paraquat (EXP)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transport (IBA)

spermatid development (ISO)

Cellular Component

acrosomal vesicle (ISO)

cytoplasm (IEA)

endomembrane system (IEA)

Golgi apparatus (IBA)

Molecular Function

protein binding (ISO)

protein domain specific binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Islet cell autoantigen of 69 kDa is an arfaptin-related protein associated with the Golgi complex of insulinoma INS-1 cells.	Spitzenberger F, etal., J Biol Chem 2003 Jul 11;278(28):26166-73.

Additional References at PubMed

PMID:26306493

Genomics

Comparative Map Data

Ica1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	68,906,148 - 68,964,078 (-)	NCBI		GRCr8
mRatBN7.2	9	61,410,959 - 61,469,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,412,091 - 61,470,134 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	69,914,281 - 69,950,389 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,029,835 - 75,065,943 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,348,547 - 73,384,653 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	66,788,094 - 66,848,958 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	66,790,047 - 66,845,403 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	58,549,961 - 58,588,146 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	58,696,942 - 58,735,128 (-)	NCBI
Celera	9	58,848,507 - 58,883,908 (-)	NCBI		Celera
Cytogenetic Map	9	q31-q32	NCBI

ICA1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	202,773,176 - 202,871,766 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	202,773,150 - 202,871,766 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	203,637,899 - 203,736,489 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	203,346,118 - 203,444,616 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	203,467,301 - 203,561,871	NCBI
Celera	2	197,390,623 - 197,489,058 (-)	NCBI		Celera
Cytogenetic Map	2	q33.2	NCBI
HuRef	2	195,484,776 - 195,583,236 (-)	NCBI		HuRef
CHM1_1	2	203,644,501 - 203,742,964 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	203,254,630 - 203,353,223 (-)	NCBI		T2T-CHM13v2.0

Ica1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	60,024,955 - 60,082,646 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	60,021,649 - 60,082,343 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	59,985,796 - 60,043,481 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	59,982,490 - 60,043,184 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	60,045,912 - 60,099,931 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	59,933,614 - 59,987,633 (-)	NCBI		MGSCv36	mm8
Celera	1	60,504,490 - 60,558,846 (-)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI
cM Map	1	30.45	NCBI

Ica1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	12,006,306 - 12,085,799 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	11,983,201 - 12,085,870 (+)	NCBI	ChiLan1.0	ChiLan1.0

ICA1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	105,406,392 - 105,475,098 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	105,421,389 - 105,490,094 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	90,034,205 - 90,105,600 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	208,184,023 - 208,252,084 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	208,184,023 - 208,251,254 (-)	Ensembl	panpan1.1		panPan2

ICA1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	11,674,970 - 11,754,931 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	11,678,125 - 11,741,997 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	12,558,653 - 12,638,491 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	11,611,993 - 11,691,866 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	11,613,496 - 11,691,338 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	11,568,391 - 11,648,134 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	11,539,667 - 11,619,487 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	11,533,517 - 11,613,396 (-)	NCBI		UU_Cfam_GSD_1.0

Ica1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	159,877,981 - 159,952,434 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	1,853,868 - 1,902,788 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	1,853,178 - 1,922,684 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ICA1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	106,295,934 - 106,377,579 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	106,293,936 - 106,377,573 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	117,753,375 - 117,827,860 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ICA1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	88,492,255 - 88,609,268 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	88,517,716 - 88,569,031 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	110,776,859 - 110,874,196 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ica1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	13,588,073 - 13,687,250 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624765	13,547,437 - 13,687,641 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ica1l
299 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	29
Count of miRNA genes:	29
Interacting mature miRNAs:	29
Transcripts:	ENSRNOT00000041546
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	49968546	71098346	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	61381434	65691299	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat

Markers in Region

BF413809

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,425,984 - 61,426,090 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	66,801,989 - 66,802,094	NCBI	Rnor6.0
Rnor_5.0	9	66,613,858 - 66,613,963	UniSTS	Rnor5.0
RGSC_v3.4	9	58,561,730 - 58,561,835	UniSTS	RGSC3.4
Celera	9	58,860,276 - 58,860,381	UniSTS
RH 3.4 Map	9	495.8	UniSTS
Cytogenetic Map	9	q31	UniSTS

RH133804

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,413,720 - 61,413,940 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	66,789,725 - 66,789,944	NCBI	Rnor6.0
Rnor_5.0	9	66,601,594 - 66,601,813	UniSTS	Rnor5.0
RGSC_v3.4	9	58,549,466 - 58,549,685	UniSTS	RGSC3.4
Celera	9	58,848,012 - 58,848,231	UniSTS
RH 3.4 Map	9	496.3	UniSTS
Cytogenetic Map	9	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	9	31	113	71	70	39	25	39	6	178	77	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_199400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY491990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041546 ⟹ ENSRNOP00000045103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,412,091 - 61,450,546 (-)	Ensembl
Rnor_6.0 Ensembl	9	66,790,047 - 66,845,403 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094628 ⟹ ENSRNOP00000094417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,412,091 - 61,470,134 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119954 ⟹ ENSRNOP00000076459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	61,412,091 - 61,470,134 (-)	Ensembl

RefSeq Acc Id:

NM_199400 ⟹ NP_955432

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,692 (-)	NCBI
mRatBN7.2	9	61,412,090 - 61,469,638 (-)	NCBI
Rnor_6.0	9	66,790,220 - 66,825,834 (-)	NCBI
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI
RGSC_v3.4	9	58,549,961 - 58,588,146 (-)	RGD
Celera	9	58,848,507 - 58,883,908 (-)	RGD

Sequence:

show sequence

ATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTAGTGAGCAGAATGCAGAAGA
AATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAAAGGAGGATGAGCACGTGGT
TGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTCCATCCAGGAGACATGCAAT
GAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTTATATCAGAGGAAGAAAATG
AACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTCAAGCTGGCAAAATGATGGG
CGCCGCTGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGCCTTGTGCACTCCCCTGTCT
CGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCTGACACCTCAGTGACCATCA
ACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGTGGATGAAAGACGCATCACA
GGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAAAGTACAGATTCAAGTGAGA
AACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAGAAAGTGGACTTGCTGGGTG
CTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGAGAACATTACTTGGGTTCTG
GGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGCTGGCTTTCATCCATATGAC
TTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACTGCAGAGGACAAAGAAGAAC
AAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTTTGTCTGAAGAGGAAGAGAG
ATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTCACTAGAAGGAGATGATTTT
GAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCTTCACGTGCTAGTGAATGTA
CACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCCAGGAGCCTTCATTAGGACC
CGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTTTGACCTTGGCCTTCATGCT
GATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACACTCAGATACCTTGCCAGTAC
CTTCACAGCATCCAAAGAAATTAAAATACCTGGGGCCACTCTCAAACCCAGATGCCATTGGACA
CTCAGATGACGAGCTTCTGAATGCCTGA

hide sequence

RefSeq Acc Id:

XM_006244994 ⟹ XP_006245056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGC
CGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCT
TTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTA
GTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAA
AGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTC
CATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTT
ATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTC
AAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGC
CTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCT
GACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGT
GGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAA
AGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAG
AAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGA
GAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGC
TGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACT
GCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTT
TGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTC
ACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCT
TCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCC
AGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTT
TGACCTTGGCCTTCATGCTGATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACAC
TCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAATGGCCTCCACATGCTGGAT
ACCCTGCTAGCTACACCCTCAGCCTGGATGCCCCCAACAGTGGTAACCAAGACATGTCAGCCTG
GTTCAATCTATTTGCAGACCTGGGGCCACTCTCAAACCCAGATGCCATTGGACACTCAGATGAC
GAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGCTTCAGGGGTCTTGAGGAA
CCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACCACACACAGAAGCATGT
GTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGAGCACCTGAGCAGGCTGTG
GTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATTTTACAAACTCCGCAAT
ACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTTTCTTTGGAAGGTGTTTTA
CACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTATAGTTTGGGGGGTTTT
CTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAACTATAAAAAGCTTTCTCAC
CAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAATTAAGAGAAACGTGGGT
TTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTCATATGCAATCATGGATAC
ATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAAGCCATCATCTGTAGAA
ATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGCTACTTTCTCTACAGAACA
GTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCCAGAAACTTCTATGTGA
ACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTCAACACACACTTGAGCCCA
GAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCATCCCATGTTCTTCCTT
TCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCTATTGGCAGAGGACATAGA
GTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGGCGAAATCATAACTGCT
GGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTAATTTAAGGGTAGTTCTCC
AAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACATCTTAAGTTGTTTATTG
TGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAAATTACATATAATGTCCAA
GTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTAGAATGCCATCCACTCC
ACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCTGTCAACTGGTGCAAGGGC
TGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAATATCTTCAGTCTTAATG
AACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAATTCCAGAACACAATATTGT
CATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAGTCTGAGGCTAGGGTCC
AGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGTCTGTGCTACCTCTCTTTG
CGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGAACACTTACCAGAAAGA
CAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAAATGGGTATCTTTTATATC
GAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACTTCACAGAAAGTTAGAC
AGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGAATGGCAGGTCATATGATC
AGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGTTCTAATATCATTAGAA
ACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGGAGCTATATTTCCACTCTG
AATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTTCCTAACTAATAGATCT
AGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTTCCCTCTCTCTTGAGCGTC
CATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_006244995 ⟹ XP_006245057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,517 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,467 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGC
CGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCT
TTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTA
GTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAA
AGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTC
CATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTT
ATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTC
AAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGC
CTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCT
GACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGT
GGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAA
AGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAG
AAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGA
GAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGC
TGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACT
GCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTT
TGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTC
ACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCT
TCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCC
AGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTT
TGACCTTGGCCTTCATGCTGATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACAC
TCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAATCCCCCAACAGTGGTAACC
AAGACATGTCAGCCTGGTTCAATCTATTTGCAGACCTGGGGCCACTCTCAAACCCAGATGCCAT
TGGACACTCAGATGACGAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGCTT
CAGGGGTCTTGAGGAACCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACC
ACACACAGAAGCATGTGTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGAGC
ACCTGAGCAGGCTGTGGTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATT
TTACAAACTCCGCAATACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTTTC
TTTGGAAGGTGTTTTACACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTA
TAGTTTGGGGGGTTTTCTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAACTA
TAAAAAGCTTTCTCACCAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAAT
TAAGAGAAACGTGGGTTTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTCAT
ATGCAATCATGGATACATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAA
GCCATCATCTGTAGAAATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGCTA
CTTTCTCTACAGAACAGTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCC
AGAAACTTCTATGTGAACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTCAA
CACACACTTGAGCCCAGAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCA
TCCCATGTTCTTCCTTTCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCTAT
TGGCAGAGGACATAGAGTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGG
CGAAATCATAACTGCTGGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTAAT
TTAAGGGTAGTTCTCCAAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACAT
CTTAAGTTGTTTATTGTGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAAAT
TACATATAATGTCCAAGTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTA
GAATGCCATCCACTCCACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCTGT
CAACTGGTGCAAGGGCTGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAAT
ATCTTCAGTCTTAATGAACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAATTC
CAGAACACAATATTGTCATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAG
TCTGAGGCTAGGGTCCAGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGTCT
GTGCTACCTCTCTTTGCGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGA
ACACTTACCAGAAAGACAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAAAT
GGGTATCTTTTATATCGAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACT
TCACAGAAAGTTAGACAGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGAAT
GGCAGGTCATATGATCAGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGT
TCTAATATCATTAGAAACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGGAG
CTATATTTCCACTCTGAATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTT
CCTAACTAATAGATCTAGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTTCC
CTCTCTCTTGAGCGTCCATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_006244999 ⟹ XP_006245061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI
Rnor_5.0	9	66,599,967 - 66,659,239 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGC
CGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCT
TTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTA
GTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAA
AGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTC
CATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTT
ATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTC
AAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGC
CTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCT
GACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGT
GGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAA
AGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAG
AAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGA
GAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGC
TGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACT
GCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTT
TGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTC
ACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCT
TCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCC
AGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTT
TGACCTTGGCCTTCATGCTGATGGAGCTTTCAACACCCCCAACAGTGGTAACCAAGACATGTCA
GCCTGGTTCAATCTATTTGCAGACCTGGGGCCACTCTCAAACCCAGATGCCATTGGACACTCAG
ATGACGAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGCTTCAGGGGTCTTG
AGGAACCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACCACACACAGAAG
CATGTGTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGAGCACCTGAGCAGG
CTGTGGTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATTTTACAAACTCC
GCAATACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTTTCTTTGGAAGGTG
TTTTACACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTATAGTTTGGGGG
GTTTTCTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAACTATAAAAAGCTTT
CTCACCAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAATTAAGAGAAACG
TGGGTTTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTCATATGCAATCATG
GATACATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAAGCCATCATCTG
TAGAAATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGCTACTTTCTCTACA
GAACAGTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCCAGAAACTTCTA
TGTGAACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTCAACACACACTTGA
GCCCAGAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCATCCCATGTTCT
TCCTTTCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCTATTGGCAGAGGAC
ATAGAGTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGGCGAAATCATAA
CTGCTGGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTAATTTAAGGGTAGT
TCTCCAAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACATCTTAAGTTGTT
TATTGTGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAAATTACATATAATG
TCCAAGTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTAGAATGCCATCC
ACTCCACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCTGTCAACTGGTGCA
AGGGCTGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAATATCTTCAGTCT
TAATGAACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAATTCCAGAACACAAT
ATTGTCATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAGTCTGAGGCTAG
GGTCCAGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGTCTGTGCTACCTCT
CTTTGCGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGAACACTTACCAG
AAAGACAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAAATGGGTATCTTTT
ATATCGAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACTTCACAGAAAGT
TAGACAGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGAATGGCAGGTCATA
TGATCAGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGTTCTAATATCAT
TAGAAACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGGAGCTATATTTCCA
CTCTGAATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTTCCTAACTAATA
GATCTAGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTTCCCTCTCTCTTGA
GCGTCCATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_008767111 ⟹ XP_008765333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,521 (-)	NCBI
mRatBN7.2	9	61,412,088 - 61,469,470 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGC
CGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCT
TTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTA
GTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAA
AGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGAGACATGCAA
TGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTTATATCAGAGGAAGAAAAT
GAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTCAAGCTGGCAAAATGATGG
GCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGCCTTGTGCACTCCCCTGTC
TCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCTGACACCTCAGTGACCATC
AACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGTGGATGAAAGACGCATCAC
AGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAAAGTACAGATTCAAGTGAG
AAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAGAAAGTGGACTTGCTGGGT
GCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGAGAACATTACTTGGGTTCT
GGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGCTGGCTTTCATCCATATGA
CTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACTGCAGAGGACAAAGAAGAA
CAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTTTGTCTGAAGAGGAAGAGA
GATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTCACTAGAAGGAGATGATTT
TGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCTTCACGTGCTAGTGAATGT
ACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCCAGGAGCCTTCATTAGGAC
CCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTTTGACCTTGGCCTTCATGC
TGATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACACTCAGATACCTTGCCAGTA
CCTTCACAGCATCCAAAGAAATTAAAATGGCCTCCACATGCTGGATACCCTGCTAGCTACACCC
TCAGCCTGGATGCCCCCAACAGTGGTAACCAAGACATGTCAGCCTGGTTCAATCTATTTGCAGA
CCTGGGGCCACTCTCAAACCCAGATGCCATTGGACACTCAGATGACGAGCTTCTGAATGCCTGA
CTGATGTCATGGTGACTGACATCACAGCTTCAGGGGTCTTGAGGAACCAACTGTGCAACATTTG
CCTTTCTGAAGAGAAGTTCCCACTGCGACCACACACAGAAGCATGTGTTCAGGATAGAACGTCT
ACCAGCCAACTCTAGTCACAGGATTGGAGCACCTGAGCAGGCTGTGGTACTTCATATGCTGGGT
GGGCAGGCTGTTGATAGTACATGGATAATTTTACAAACTCCGCAATACTGAGAAACCAAACTTA
CGGCTGAATCACAGAAGCATGGTGTGTTTCTTTGGAAGGTGTTTTACACTTGTTACTTTGCTTT
AAGGGGATAAAGAATAGGATAGAGTGGCTATAGTTTGGGGGGTTTTCTTGATAGTGTCAGGTGT
TTTCTGTTGTGGGGACCAGCACTAGAACTATAAAAAGCTTTCTCACCAATTACAATGTAGAACA
AGATTAGAGAACTGTCTGCTTTACTGAAATTAAGAGAAACGTGGGTTTGCTTTTCTGTACCTGG
TAACTAAATGCAATGTTACCGTTCATTCATATGCAATCATGGATACATTAGTTCCATTATTAAA
TTTTCATGGGGAAGACAGCAGGATGCAAAAGCCATCATCTGTAGAAATGGGAAAAGGAATCTAC
AGGTCTGTTTCACTGACTCTTGCAGTGCTACTTTCTCTACAGAACAGTGAGGACAAGCATTGCA
TGTCTGGGCAGCAATCTTGCTGAAACTTCCAGAAACTTCTATGTGAACATGCAAGACACTTTCA
AATGCCATCATAATAGTTGTATTTTCTCAACACACACTTGAGCCCAGAAGGATTTCTGATAGAC
ATGGAGGATTCTACAGAAAGCTAAGGAGCATCCCATGTTCTTCCTTTCAGTCTAACTCCCACAG
TGCCATTAGAGAGTACTAAGCAAAAGCTATTGGCAGAGGACATAGAGTCTAGGGTTTGAAGGGA
AGGCTATTCAGTGGCAGTTGGGCAAACTGGCGAAATCATAACTGCTGGATTGCTACTCCTTCAG
CTTCCTGTCCTTTCTTGTCCACCCTTTAATTTAAGGGTAGTTCTCCAAGTGTTCTGTCATCAAG
TCCATTGTGGCCAGTGTCCCACAGGGACATCTTAAGTTGTTTATTGTGGTTTTTATGGGCTTCT
AGTCATTAGCAGGTTGATTCAAGTTCAAATTACATATAATGTCCAAGTCATGGTATATAGGGAG
CTATTTTTAAGAAAAAAACCAGAGTGGGTAGAATGCCATCCACTCCACACATTCAGAAACCTGG
CCTAACCCTGTGGAACTGACCCTGAGCTGTCAACTGGTGCAAGGGCTGCAGACTCACCTGTGGG
TCAGAAACAAATGCAGACTTGTTCCTAAATATCTTCAGTCTTAATGAACTATTACCTCTTCAAA
AGCACTTCCCTTCTGTTCAGTGAAAAATTCCAGAACACAATATTGTCATTGTTCTGCCAAGATT
GATCACCAGGATTACTATAATGAATCACAGTCTGAGGCTAGGGTCCAGAGCAACCACTGCCATT
AACCTCAAGAAGCAATAACTTACACTGTCTGTGCTACCTCTCTTTGCGAGGTATCCTTCCATGA
GTTAGTTCAGTTATGAGAACACAGTTGTGAACACTTACCAGAAAGACAGCTGATGGGGAAGCAT
AGGTTGTCCCAGAGCAACTTTGTCAAAAATGGGTATCTTTTATATCGAGTGAAGAAGCACCTAT
GTTCTACTTTATTTTATTCCAAATTAGACTTCACAGAAAGTTAGACAGACCCAAGCACAGCCAC
ATTAGCCTTCTCCTCAAGAGACACAAGAATGGCAGGTCATATGATCAGATTGGTGTAATTTGTA
TTTTCTGAGATTTTAATTGTATAATAGTGTTCTAATATCATTAGAAACAAATTGTATTTAAAAT
TAGATTTCATTATTTGCACATTGAAAGGAGCTATATTTCCACTCTGAATATTTATTTCACATTA
CCTATTGTTCTGGGTATTTATTTCATGTTTCCTAACTAATAGATCTAGAAATATACAGGGCTTA
CAGCATTAGGAAGCTAGTTTAATGTGTTCCCTCTCTCTTGAGCGTCCATTAATAAAGATTACAG
ATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_017596461 ⟹ XP_017451950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,845,406 (-)	NCBI

Sequence:

show sequence

GCCTGGCCCCTCCGCGGCGGGGGCGTCTCCCGCGCTCCCTCCAGGGGAAGCCGCGGCCTGAGGC
CGGCCTTGGAGCTCCGGATGGGGGCAAACGTTCACAGCCCGGCGTGCTTTCCTGTTGGCCGCCT
TTTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCAGAAGACAGCCAGTCAGTA
GTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTATCAAAGCGACAGGGAAAA
AGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAAACTTGAGGTTTTTCACTC
CATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATACCAGCTAAGACTCAATGTT
ATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAGCAGAGCGGGATGCAACTC
AAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTCAGCCAAGCAAAGACTGGC
CTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTCAGTCAGAGGGCCATCTCT
GACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGTACAGAGGGGCCCTGCTGT
GGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACAAGTGGAGAAGTTCAGAAA
AGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTAAAGATGGATGTCTGTCAG
AAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACTCACTCGCTACCTACCAGA
GAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCAAATCCAAGAGGCCTGTGC
TGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGACACTCCAGGCAATCTCACT
GCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAAACCTCAATAAGGTAGCTT
TGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACGCGCTCTGCCTAGAGACTC
ACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGTCTCCTAAGCCCCACCTCT
TCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGAGCCCCAGCCTCATGTGCC
AGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTTCCTTCCTTCACGGCTTTT
TGACCTTGGCCTTCATGCTGATGGAGCTTTCAACAGCTGGGCTTCCCAAGAGGGATCAGAACAC
TCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAATGGCCTCCACATGCTGGAT
ACCCTGCTAGCTACACCCTCAGCCTGGATGACCTGGGGCCACTCTCAAACCCAGATGCCATTGG
ACACTCAGATGACGAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGCTTCAG
GGGTCTTGAGGAACCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGACCACA
CACAGAAGCATGTGTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGAGCACC
TGAGCAGGCTGTGGTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAATTTTA
CAAACTCCGCAATACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTTTCTTT
GGAAGGTGTTTTACACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGCTATAG
TTTGGGGGGTTTTCTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAACTATAA
AAAGCTTTCTCACCAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAAATTAA
GAGAAACGTGGGTTTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTCATATG
CAATCATGGATACATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAAAAGCC
ATCATCTGTAGAAATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGCTACTT
TCTCTACAGAACAGTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTTCCAGA
AACTTCTATGTGAACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTCAACAC
ACACTTGAGCCCAGAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAGCATCC
CATGTTCTTCCTTTCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCTATTGG
CAGAGGACATAGAGTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACTGGCGA
AATCATAACTGCTGGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTAATTTA
AGGGTAGTTCTCCAAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGACATCTT
AAGTTGTTTATTGTGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAAATTAC
ATATAATGTCCAAGTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGGTAGAA
TGCCATCCACTCCACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCTGTCAA
CTGGTGCAAGGGCTGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAAATATC
TTCAGTCTTAATGAACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAATTCCAG
AACACAATATTGTCATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCACAGTCT
GAGGCTAGGGTCCAGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGTCTGTG
CTACCTCTCTTTGCGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGTGAACA
CTTACCAGAAAGACAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAAATGGG
TATCTTTTATATCGAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGACTTCA
CAGAAAGTTAGACAGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGAATGGC
AGGTCATATGATCAGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGTGTTCT
AATATCATTAGAAACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGGAGCTA
TATTTCCACTCTGAATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGTTTCCT
AACTAATAGATCTAGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTTCCCTC
TCTCTTGAGCGTCCATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_017596464 ⟹ XP_017451953

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,964,078 (-)	NCBI
mRatBN7.2	9	61,412,088 - 61,469,884 (-)	NCBI
Rnor_6.0	9	66,788,094 - 66,848,958 (-)	NCBI

Sequence:

show sequence

CAAAGGTGTACACCACCATGCCCAACTCTGCCTTACTCATTTCTTAAGGCACTAGTATAAGCCA
TTTAAAGACCTTGATCAACCCTGTATAAATAGGAATATCCTGAGGAAATCCTGATGACTGCCCA
GAAGTATCACTAGTTCAGCATGGTTTGCCAAGAGACATTTCTACATTCGGTGGTGCTGACTTCC
TGCTGTGTTCCTTGGCTGTTTCAGGTAGAGCAGGAAAAGGTAACTTGTCTCCTGAATTCAGTTC
TAACTGTTGGAGGAAGCATTACTTAAAATAGTCCAAGGAACAAACATACCACTGACATAGCAAT
ACCCTAAACACACTCCTGACATGGCAATACCCTAAACATACCACTGTAATGGTCATACCTTAAA
CATACCATTGTAATGATAAGACCTTAAAAGTGGTTTTGGAGTCATTTGTTCCTTGGGGGAGGGG
CGTCTAATTCTGTTTAGGTATGATGTGTGAGCTGGCCACTAGGCCTTTTTGTTACAGTCATTGA
TAGAATAGACATTGATTAGGGATCTAAGTTTGCACTGGACACAGTTCTAGGAGACAAGGCTGCA
GAAATGCATAAGGATAGAACAGCAAAGCATCTAATGGAAGAAAACTGGGATAAACATGCTAGTG
TTGTGTGACTTCCTAGGGAGATGTAAACAGCATCTGTTCAGGGTAGACCAGGCACTGACAGTGG
ACCAAAGCAGTGAGTTTAGCAGGTAACTTTCTAGATGCATAGGTGAGGGTAACTTACAGGATCA
TGAATGATACAATGATAGTCACCAAAAAGTGCACCTCAACACAGTGACAACTCAAAAGTTACAT
CCCTAGAGCTGCCTGCTCACTGGCCCCAGCCACACTCAACACTCTTCTCAGAAGCAACTGTTTG
GCTTCCCTAACCGTGGATCTTGGGTATTTCAGGAGCCTCTTGAGTCTTGTGAGACTATTTTCCA
AAAAGGGATGGTTGAATTCTGAAGAAACAGATAGCTGGTTAGGAGGCATCCCAGACAATACTGA
GAGTTTTCTGACAAACTCTTGCCTTGCCCTCCCCAACAATGGGATGGACATATACCTAAGGCAA
AGCAAGGGGAGCTTAGTTGCCATGCAGGCATAACAGTTCAAACACGGAAGGAGGAATTGAGATT
CATGATGGCAACAGAATGTCAGCTAGGAGGCTACAACCCTGTGCCTTCAGCAGGCTGCAGGTGC
CTGTGAGAAGCTGCAAATGTTAGGACTTTGCTCTTAACACACCTGAGAGAGCAGTGTTGCAGGT
GGAACACTAGTTAAGCTTTGGGGTGCCAACCTTGAGTTTGAGTGTGCAGACAGGCAGAGGCTGG
AGTCTGTCTCTGGTCAGAACTTGGAGGCTGAAGACAGCTGAATGAATTCCCATCTGCAGCCATA
GCGTGGAATCCCAAGGCTCAGACAGGAAGGAGGCTTCCTTGCAGCTACAGGTCAAGTCCTGGAG
GCTGGAGCATCATGAACCTCCCAAGGTTAGATCCCTTTGAAGACAGTATTCTTTCTCCAGGAAC
ATCTAGAGCTGGCTGAGCCAGCCTGAGTCCAGCCTTCCTCTGAGAGCAATCTGCCAAAACTGAA
GAAGCCCTTGCCTGCTCTGCTCTATAGAGCCAGGCGGGCCCCAGTTGGCTGAATCTGTGTGCAT
ACAACCAGGCTTAGTGACCCAGCCCTTTAATTCCAACACTCCTGAAGACCGAGTCTGGTCTGCA
GAGTGAGTTTCCAGCATAGCCAGAACTAAATGGTGAGACCTTGTCTCAGGAAAACAACAACAAA
CACCCAAACTTTTAAAATGGGTCAATCAGGGAAGAGCTGTGCAAGTGTTAAAACCTGGAGCTGG
AGGGGAGCTATCTAATACATTCTCAACCAGGTCAGTGGGTTGCTTTCTAACCCTGTCCAGTAGG
GAAGTAGGTTCTGAACTGGTTATAGGGCACCCAGAAGTTTCTGTCAGCTTCCAGCTGTTGTGGA
GGGAGGACAGAGGGATATTCGAGTCATCCTACAGGAACTGCTGCAGCTGTCTGTCAGGGACTTT
GCAGCTTCCATCCCAGTGGCCTTTAACACAAGGTCAACAGCTTGGACTGCAGCTCACTCTTGCC
TTGGTTGTACTAGAGGGTCCTCCACATCAGTTTTTGCCTGGCTTTAGTCTTTTTCATTTTGCTC
ACCTGTTGCTTCGATGACAGCTAGACTCATTCAGTAGATTGCTGTGACTGCCACTAACTCCTTG
CCCTGGGCTCCAGGCTGTTTAAAAGCTCTCTGGAGCCTTAGAAAGAGCTGGGGCCCCACCTACC
CATCTCAGTATGACCTAGGAAAGATCCGGAGAACTGCAGTTGACCAATCATACCTGCTTCCTGC
TAATTCATATTCCTTCAAGGATTTGGACTTTGAGGAGCAGGAGAAACTATTGACACTTTCCTTG
GGTGTGGGGAGTCCCAAAATTGCATATAATTTCAAGTATTTGTCCATTATTTGAAATCCAAAAT
AGCTGTGTAAGAATTTAAAGGTACCTTAAAATTTTTAGTTCAAATCAGCCCGCTATAGAAGTAT
CTTTTCTAGTCTAAAACTTAAAAGCTTTACAGACTACTTTGTAATTAATATTTAGTCTGGACCC
TTACATCATGTAGTTATCTATGATCCATCAGATAGTTGCCCCAAGAGTTAAGCGGGGTTTTTCC
CCCATTGCCAGCCTATATGTCACATATACATGAATTAGTATATTGTAAACCTTCAGGAAAGTTG
AATTTGGACGCCAACTTGAAAAGGAAAGCACTTTGAGTTCATTACTCCTTACCAGTAATAATTT
TCCTTTCTACTGATTTCCATTTCTTTTCCCTGAGGTTTTTTTAAGCTCAGAATTTGCTTTTTAC
TCTTGAAAACAGGTTTATCATTCACTCTCACTCTCGGAACTGTAGTTCTGTATATGGCATTTGA
AGTCAGTTATTAACAGTCGTCCCTCTTAAACCTTTAAAAATGAGTGTGAAGACCCGCGTGAACA
TTTGCCTCGCGCTGAGCCCTAGTACAAAGTGGCGACAAGACGCAGAGGCAGCGCGGGGAATGCG
GGAGCTGGGAGGCAAGGCCAAGCCGGTCTTCCGCGCACCCACCTCGGATGCCCCGGCTCAACGA
GGGTCTCTGGTTCAGCGCCTGGCGTCCGTCACTTCTCACCGGCAAGCGACAGCCAGGGCCCGCG
CCCTCCGCCGGGGGATACAGTCTGTTTCAGTTACTCCATGGATTCCTTTGAGCACCTCAGACCA
GAAGACAGCCAGTCAGTAGTGAGCAGAATGCAGAAGAAATACTGGAAAACTAAGCAGGTCTTTA
TCAAAGCGACAGGGAAAAAGGAGGATGAGCACGTGGTTGCATCTGATGCAGAACTGGATGCTAA
ACTTGAGGTTTTTCACTCCATCCAGGAGACATGCAATGAACTCGTGAAGGCAGTTGAGAAATAC
CAGCTAAGACTCAATGTTATATCAGAGGAAGAAAATGAACTAGGGCTCTTTTTAACGTTTCAAG
CAGAGCGGGATGCAACTCAAGCTGGCAAAATGATGGGCGCCGCCGGCAAGGCCCTCTGCTCTTC
AGCCAAGCAAAGACTGGCCTTGTGCACTCCCCTGTCTCGTCTTAAGCAAGAAGTGGCAACGTTC
AGTCAGAGGGCCATCTCTGACACCTCAGTGACCATCAACCGCATGGAGCGGGCTCGCACCGAGT
ACAGAGGGGCCCTGCTGTGGATGAAAGACGCATCACAGGAACTTGACCCAGACACCTTCAAACA
AGTGGAGAAGTTCAGAAAAGTACAGATTCAAGTGAGAAACAGCAAAGATTGTTTCGACAAGTTA
AAGATGGATGTCTGTCAGAAAGTGGACTTGCTGGGTGCTAGTCGGTGCAATATGTTATCTCACT
CACTCGCTACCTACCAGAGAACATTACTTGGGTTCTGGGAGAAAACGGCTCAAATGATGTCCCA
AATCCAAGAGGCCTGTGCTGGCTTTCATCCATATGACTTCATGGCTCTCAAGCAACTACAAGAC
ACTCCAGGCAATCTCACTGCAGAGGACAAAGAAGAACAAACAGAGGGCAGTTGTCTTAGTACAA
ACCTCAATAAGGTAGCTTTGTCTGAAGAGGAAGAGAGATTTGAGAGAGAACCAGCAGTTGCACG
CGCTCTGCCTAGAGACTCACTAGAAGGAGATGATTTTGAGAAGGAGTTCTCATTTCTGAGCAGT
CTCCTAAGCCCCACCTCTTCACGTGCTAGTGAATGTACACAGGAATGCCAGCCCGCCTGTGGGA
GCCCCAGCCTCATGTGCCAGGAGCCTTCATTAGGACCCGGGCCTCTCACTTCTTCCTCCCAGTT
CCTTCCTTCACGGCTTTTTGACCTTGGCCTTCATGCTGATGGAGCTTTCAACAGCTGGGCTTCC
CAAGAGGGATCAGAACACTCAGATACCTTGCCAGTACCTTCACAGCATCCAAAGAAATTAAAAT
GGCCTCCACATGCTGGATACCCTGCTAGCTACACCCTCAGCCTGGATGCCCCCAACAGTGGTAA
CCAAGACATGTCAGCCTGGTTCAATCTATTTGCAGACCTGGGGCCACTCTCAAACCCAGATGCC
ATTGGACACTCAGATGACGAGCTTCTGAATGCCTGACTGATGTCATGGTGACTGACATCACAGC
TTCAGGGGTCTTGAGGAACCAACTGTGCAACATTTGCCTTTCTGAAGAGAAGTTCCCACTGCGA
CCACACACAGAAGCATGTGTTCAGGATAGAACGTCTACCAGCCAACTCTAGTCACAGGATTGGA
GCACCTGAGCAGGCTGTGGTACTTCATATGCTGGGTGGGCAGGCTGTTGATAGTACATGGATAA
TTTTACAAACTCCGCAATACTGAGAAACCAAACTTACGGCTGAATCACAGAAGCATGGTGTGTT
TCTTTGGAAGGTGTTTTACACTTGTTACTTTGCTTTAAGGGGATAAAGAATAGGATAGAGTGGC
TATAGTTTGGGGGGTTTTCTTGATAGTGTCAGGTGTTTTCTGTTGTGGGGACCAGCACTAGAAC
TATAAAAAGCTTTCTCACCAATTACAATGTAGAACAAGATTAGAGAACTGTCTGCTTTACTGAA
ATTAAGAGAAACGTGGGTTTGCTTTTCTGTACCTGGTAACTAAATGCAATGTTACCGTTCATTC
ATATGCAATCATGGATACATTAGTTCCATTATTAAATTTTCATGGGGAAGACAGCAGGATGCAA
AAGCCATCATCTGTAGAAATGGGAAAAGGAATCTACAGGTCTGTTTCACTGACTCTTGCAGTGC
TACTTTCTCTACAGAACAGTGAGGACAAGCATTGCATGTCTGGGCAGCAATCTTGCTGAAACTT
CCAGAAACTTCTATGTGAACATGCAAGACACTTTCAAATGCCATCATAATAGTTGTATTTTCTC
AACACACACTTGAGCCCAGAAGGATTTCTGATAGACATGGAGGATTCTACAGAAAGCTAAGGAG
CATCCCATGTTCTTCCTTTCAGTCTAACTCCCACAGTGCCATTAGAGAGTACTAAGCAAAAGCT
ATTGGCAGAGGACATAGAGTCTAGGGTTTGAAGGGAAGGCTATTCAGTGGCAGTTGGGCAAACT
GGCGAAATCATAACTGCTGGATTGCTACTCCTTCAGCTTCCTGTCCTTTCTTGTCCACCCTTTA
ATTTAAGGGTAGTTCTCCAAGTGTTCTGTCATCAAGTCCATTGTGGCCAGTGTCCCACAGGGAC
ATCTTAAGTTGTTTATTGTGGTTTTTATGGGCTTCTAGTCATTAGCAGGTTGATTCAAGTTCAA
ATTACATATAATGTCCAAGTCATGGTATATAGGGAGCTATTTTTAAGAAAAAAACCAGAGTGGG
TAGAATGCCATCCACTCCACACATTCAGAAACCTGGCCTAACCCTGTGGAACTGACCCTGAGCT
GTCAACTGGTGCAAGGGCTGCAGACTCACCTGTGGGTCAGAAACAAATGCAGACTTGTTCCTAA
ATATCTTCAGTCTTAATGAACTATTACCTCTTCAAAAGCACTTCCCTTCTGTTCAGTGAAAAAT
TCCAGAACACAATATTGTCATTGTTCTGCCAAGATTGATCACCAGGATTACTATAATGAATCAC
AGTCTGAGGCTAGGGTCCAGAGCAACCACTGCCATTAACCTCAAGAAGCAATAACTTACACTGT
CTGTGCTACCTCTCTTTGCGAGGTATCCTTCCATGAGTTAGTTCAGTTATGAGAACACAGTTGT
GAACACTTACCAGAAAGACAGCTGATGGGGAAGCATAGGTTGTCCCAGAGCAACTTTGTCAAAA
ATGGGTATCTTTTATATCGAGTGAAGAAGCACCTATGTTCTACTTTATTTTATTCCAAATTAGA
CTTCACAGAAAGTTAGACAGACCCAAGCACAGCCACATTAGCCTTCTCCTCAAGAGACACAAGA
ATGGCAGGTCATATGATCAGATTGGTGTAATTTGTATTTTCTGAGATTTTAATTGTATAATAGT
GTTCTAATATCATTAGAAACAAATTGTATTTAAAATTAGATTTCATTATTTGCACATTGAAAGG
AGCTATATTTCCACTCTGAATATTTATTTCACATTACCTATTGTTCTGGGTATTTATTTCATGT
TTCCTAACTAATAGATCTAGAAATATACAGGGCTTACAGCATTAGGAAGCTAGTTTAATGTGTT
CCCTCTCTCTTGAGCGTCCATTAATAAAGATTACAGATGGCATAAAGCAA

hide sequence

RefSeq Acc Id:

XM_039083634 ⟹ XP_038939562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,520 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,470 (-)	NCBI

RefSeq Acc Id:

XM_039083635 ⟹ XP_038939563

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,621 (-)	NCBI

RefSeq Acc Id:

XM_039083636 ⟹ XP_038939564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI

RefSeq Acc Id:

XM_039083637 ⟹ XP_038939565

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,518 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,469,468 (-)	NCBI

RefSeq Acc Id:

XM_039083638 ⟹ XP_038939566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,943,779 (-)	NCBI
mRatBN7.2	9	61,410,959 - 61,449,727 (-)	NCBI

RefSeq Acc Id:

XM_063267202 ⟹ XP_063123272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,519 (-)	NCBI

RefSeq Acc Id:

XM_063267203 ⟹ XP_063123273

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,519 (-)	NCBI

RefSeq Acc Id:

XM_063267204 ⟹ XP_063123274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267205 ⟹ XP_063123275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,519 (-)	NCBI

RefSeq Acc Id:

XM_063267206 ⟹ XP_063123276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,737 (-)	NCBI

RefSeq Acc Id:

XM_063267207 ⟹ XP_063123277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267208 ⟹ XP_063123278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267209 ⟹ XP_063123279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267210 ⟹ XP_063123280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267211 ⟹ XP_063123281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

RefSeq Acc Id:

XM_063267212 ⟹ XP_063123282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,906,148 - 68,963,738 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_955432	(Get FASTA)	NCBI Sequence Viewer
	XP_006245056	(Get FASTA)	NCBI Sequence Viewer
	XP_006245057	(Get FASTA)	NCBI Sequence Viewer
	XP_006245061	(Get FASTA)	NCBI Sequence Viewer
	XP_008765333	(Get FASTA)	NCBI Sequence Viewer
	XP_017451950	(Get FASTA)	NCBI Sequence Viewer
	XP_017451953	(Get FASTA)	NCBI Sequence Viewer
	XP_038939562	(Get FASTA)	NCBI Sequence Viewer
	XP_038939563	(Get FASTA)	NCBI Sequence Viewer
	XP_038939564	(Get FASTA)	NCBI Sequence Viewer
	XP_038939565	(Get FASTA)	NCBI Sequence Viewer
	XP_038939566	(Get FASTA)	NCBI Sequence Viewer
	XP_063123272	(Get FASTA)	NCBI Sequence Viewer
	XP_063123273	(Get FASTA)	NCBI Sequence Viewer
	XP_063123274	(Get FASTA)	NCBI Sequence Viewer
	XP_063123275	(Get FASTA)	NCBI Sequence Viewer
	XP_063123276	(Get FASTA)	NCBI Sequence Viewer
	XP_063123277	(Get FASTA)	NCBI Sequence Viewer
	XP_063123278	(Get FASTA)	NCBI Sequence Viewer
	XP_063123279	(Get FASTA)	NCBI Sequence Viewer
	XP_063123280	(Get FASTA)	NCBI Sequence Viewer
	XP_063123281	(Get FASTA)	NCBI Sequence Viewer
	XP_063123282	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAR36901	(Get FASTA)	NCBI Sequence Viewer
	EDL98942	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000045103
	ENSRNOP00000076459
	ENSRNOP00000094417
	ENSRNOP00000104337
GenBank Protein	Q6RUG5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_955432 ⟸ NM_199400

- UniProtKB:

Q6RUG5 (UniProtKB/Swiss-Prot), A0A0H2UHX6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHVVASDAELDAKLEVFHSIQETCN
ELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMMGAAGKALCSSAKQRLALCTPLS
RLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDASQELDPDTFKQVEKFRKVQIQVR
NSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGFWEKTAQMMSQIQEACAGFHPYD
FMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEERFEREPAVARALPRDSLEGDDF
EKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLGPGPLTSSSQFLPSRLFDLGLHA
DGAFNSWASQEGSEHSDTLPVPSQHPKKLKYLGPLSNPDAIGHSDDELLNA

hide sequence

RefSeq Acc Id:	XP_006245061 ⟸ XM_006244999
- Peptide Label:	isoform X13
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANVHSPACFPVGRLFCFSYSMDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHV VASDAELDAKLEVFHSIQETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMM GAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDAS QELDPDTFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGF WEKTAQMMSQIQEACAGFHPYDFMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEE RFEREPAVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLG PGPLTSSSQFLPSRLFDLGLHADGAFNTPNSGNQDMSAWFNLFADLGPLSNPDAIGHSDDELLN A hide sequence

RefSeq Acc Id:	XP_006245057 ⟸ XM_006244995
- Peptide Label:	isoform X4
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL), A0A8I6AM57 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANVHSPACFPVGRLFCFSYSMDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHV VASDAELDAKLEVFHSIQETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMM GAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDAS QELDPDTFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGF WEKTAQMMSQIQEACAGFHPYDFMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEE RFEREPAVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLG PGPLTSSSQFLPSRLFDLGLHADGAFNSWASQEGSEHSDTLPVPSQHPKKLKSPNSGNQDMSAW FNLFADLGPLSNPDAIGHSDDELLNA hide sequence

RefSeq Acc Id:	XP_006245056 ⟸ XM_006244994
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANVHSPACFPVGRLFCFSYSMDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHV VASDAELDAKLEVFHSIQETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMM GAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDAS QELDPDTFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGF WEKTAQMMSQIQEACAGFHPYDFMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEE RFEREPAVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLG PGPLTSSSQFLPSRLFDLGLHADGAFNSWASQEGSEHSDTLPVPSQHPKKLKWPPHAGYPASYT LSLDAPNSGNQDMSAWFNLFADLGPLSNPDAIGHSDDELLNA hide sequence

RefSeq Acc Id:	XP_008765333 ⟸ XM_008767111
- Peptide Label:	isoform X3
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANVHSPACFPVGRLFCFSYSMDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHV VASDAELDAKLEETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMMGAAGKA LCSSAKQRLALCTPLSRLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDASQELDPD TFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGFWEKTAQ MMSQIQEACAGFHPYDFMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEERFEREP AVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLGPGPLTS SSQFLPSRLFDLGLHADGAFNSWASQEGSEHSDTLPVPSQHPKKLKWPPHAGYPASYTLSLDAP NSGNQDMSAWFNLFADLGPLSNPDAIGHSDDELLNA hide sequence

RefSeq Acc Id:	XP_017451953 ⟸ XM_017596464
- Peptide Label:	isoform X7
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHVVASDAELDAKLEVFHSIQETCN ELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMMGAAGKALCSSAKQRLALCTPLS RLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDASQELDPDTFKQVEKFRKVQIQVR NSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGFWEKTAQMMSQIQEACAGFHPYD FMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEERFEREPAVARALPRDSLEGDDF EKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLGPGPLTSSSQFLPSRLFDLGLHA DGAFNSWASQEGSEHSDTLPVPSQHPKKLKWPPHAGYPASYTLSLDAPNSGNQDMSAWFNLFAD LGPLSNPDAIGHSDDELLNA hide sequence

RefSeq Acc Id:	XP_017451950 ⟸ XM_017596461
- Peptide Label:	isoform X6
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANVHSPACFPVGRLFCFSYSMDSFEHLRPEDSQSVVSRMQKKYWKTKQVFIKATGKKEDEHV VASDAELDAKLEVFHSIQETCNELVKAVEKYQLRLNVISEEENELGLFLTFQAERDATQAGKMM GAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTSVTINRMERARTEYRGALLWMKDAS QELDPDTFKQVEKFRKVQIQVRNSKDCFDKLKMDVCQKVDLLGASRCNMLSHSLATYQRTLLGF WEKTAQMMSQIQEACAGFHPYDFMALKQLQDTPGNLTAEDKEEQTEGSCLSTNLNKVALSEEEE RFEREPAVARALPRDSLEGDDFEKEFSFLSSLLSPTSSRASECTQECQPACGSPSLMCQEPSLG PGPLTSSSQFLPSRLFDLGLHADGAFNSWASQEGSEHSDTLPVPSQHPKKLKWPPHAGYPASYT LSLDDLGPLSNPDAIGHSDDELLNA hide sequence

Ensembl Acc Id:

ENSRNOP00000045103 ⟸ ENSRNOT00000041546

RefSeq Acc Id:	XP_038939563 ⟸ XM_039083635
- Peptide Label:	isoform X7
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939562 ⟸ XM_039083634
- Peptide Label:	isoform X2
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939565 ⟸ XM_039083637
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_038939564 ⟸ XM_039083636
- Peptide Label:	isoform X16
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939566 ⟸ XM_039083638
- Peptide Label:	isoform X21

Ensembl Acc Id:

ENSRNOP00000094417 ⟸ ENSRNOT00000094628

Ensembl Acc Id:

ENSRNOP00000076459 ⟸ ENSRNOT00000119954

RefSeq Acc Id:	XP_063123278 ⟸ XM_063267208
- Peptide Label:	isoform X14
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123274 ⟸ XM_063267204
- Peptide Label:	isoform X9
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123281 ⟸ XM_063267211
- Peptide Label:	isoform X18
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123277 ⟸ XM_063267207
- Peptide Label:	isoform X12
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123282 ⟸ XM_063267212
- Peptide Label:	isoform X19
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123280 ⟸ XM_063267210
- Peptide Label:	isoform X17
- UniProtKB:	A0A8I5XZZ8 (UniProtKB/TrEMBL), A6IPB8 (UniProtKB/TrEMBL), A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123279 ⟸ XM_063267209
- Peptide Label:	isoform X15
- UniProtKB:	Q6RUG5 (UniProtKB/Swiss-Prot), A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123276 ⟸ XM_063267206
- Peptide Label:	isoform X11
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123273 ⟸ XM_063267203
- Peptide Label:	isoform X8
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123275 ⟸ XM_063267205
- Peptide Label:	isoform X10
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123272 ⟸ XM_063267202
- Peptide Label:	isoform X5
- UniProtKB:	A0A0H2UHX6 (UniProtKB/TrEMBL)

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6RUG5-F1-model_v2	AlphaFold	Q6RUG5	1-435	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735110	AgrOrtholog
BioCyc Gene	G2FUF-27386	BioCyc
Ensembl Genes	ENSRNOG00000017258	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000041546	ENTREZGENE
	ENSRNOT00000094628	ENTREZGENE
	ENSRNOT00000119954	ENTREZGENE
	ENSRNOT00000135120	ENTREZGENE
Gene3D-CATH	1.20.1270.60	UniProtKB/Swiss-Prot
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot
	AH_dom	UniProtKB/Swiss-Prot
	Islet_autoAg_Ica1/Ica1-like	UniProtKB/Swiss-Prot
	Islet_autoAg_Ica1_C	UniProtKB/Swiss-Prot
KEGG Report	rno:316432	UniProtKB/Swiss-Prot
NCBI Gene	316432	ENTREZGENE
PANTHER	ISLET CELL AUTOANTIGEN 1-LIKE PROTEIN	UniProtKB/Swiss-Prot
	PTHR10164	UniProtKB/Swiss-Prot
Pfam	Arfaptin	UniProtKB/Swiss-Prot
	ICA69	UniProtKB/Swiss-Prot
PhenoGen	Ica1l	PhenoGen
PROSITE	PS50870	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000017258	RatGTEx
SMART	Arfaptin	UniProtKB/Swiss-Prot
	ICA69	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF103657	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHX6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5XZZ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AM57	ENTREZGENE, UniProtKB/TrEMBL
	A6IPB8	ENTREZGENE, UniProtKB/TrEMBL
	ICA1L_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Ica1l	islet cell autoantigen 1-like	LOC316432	Ica69-related protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-09-30	LOC316432				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD