Slc39a10 (solute carrier family 39 member 10) - Rat Genome Database

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Gene: Slc39a10 (solute carrier family 39 member 10) Rattus norvegicus
Analyze
Symbol: Slc39a10
Name: solute carrier family 39 member 10
RGD ID: 1307321
Description: Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in cellular zinc ion homeostasis; positive regulation of B cell receptor signaling pathway; and zinc ion import across plasma membrane. Predicted to act upstream of or within several processes, including negative regulation of B cell apoptotic process; positive regulation of B cell proliferation; and positive regulation of protein tyrosine phosphatase activity. Predicted to be active in plasma membrane. Orthologous to human SLC39A10 (solute carrier family 39 member 10); INTERACTS WITH 1,2-dimethylhydrazine; 1,3-dicyclohexylcarbodiimide; 1-benzylpiperazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363229; solute carrier family 39 (zinc transporter), member 10; zinc transporter ZIP10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2954,836,841 - 54,960,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl954,876,141 - 54,960,325 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx963,415,252 - 63,464,475 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0968,531,028 - 68,580,251 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0966,826,876 - 66,876,105 (+)NCBIRnor_WKY
Rnor_6.0959,947,562 - 60,070,549 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl960,021,534 - 60,070,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0959,634,923 - 59,758,222 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4952,168,107 - 52,217,677 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1952,169,481 - 52,216,722 (+)NCBI
Celera952,413,746 - 52,463,043 (+)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
1,3-dicyclohexylcarbodiimide  (EXP)
1-benzylpiperazine  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
cocaine  (EXP)
coumarin  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flusilazole  (EXP)
gadodiamide hydrate  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
mercaptoethanol  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
motexafin gadolinium  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
nickel dichloride  (EXP)
ochratoxin A  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pentetic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triptonide  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP,ISO)
zidovudine  (ISO)
zinc acetate  (ISO)
zinc atom  (EXP,ISO)
zinc sulfate  (EXP)
zinc(0)  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
plasma membrane  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25074913   PMID:25074919   PMID:33742346  


Genomics

Comparative Map Data
Slc39a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2954,836,841 - 54,960,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl954,876,141 - 54,960,325 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx963,415,252 - 63,464,475 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0968,531,028 - 68,580,251 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0966,826,876 - 66,876,105 (+)NCBIRnor_WKY
Rnor_6.0959,947,562 - 60,070,549 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl960,021,534 - 60,070,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0959,634,923 - 59,758,222 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4952,168,107 - 52,217,677 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1952,169,481 - 52,216,722 (+)NCBI
Celera952,413,746 - 52,463,043 (+)NCBICelera
Cytogenetic Map9q31NCBI
SLC39A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382195,613,029 - 195,737,700 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2195,575,977 - 195,737,702 (+)EnsemblGRCh38hg38GRCh38
GRCh372196,521,682 - 196,602,424 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362196,230,184 - 196,310,663 (+)NCBINCBI36Build 36hg18NCBI36
Celera2190,277,406 - 190,358,291 (+)NCBICelera
Cytogenetic Map2q32.3NCBI
HuRef2188,374,467 - 188,455,230 (+)NCBIHuRef
CHM1_12196,527,823 - 196,608,722 (+)NCBICHM1_1
T2T-CHM13v2.02196,141,298 - 196,222,040 (+)NCBIT2T-CHM13v2.0
Slc39a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39146,846,704 - 46,964,952 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl146,846,704 - 46,932,012 (-)EnsemblGRCm39 Ensembl
GRCm38146,807,544 - 46,925,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl146,807,544 - 46,892,852 (-)EnsemblGRCm38mm10GRCm38
MGSCv37146,864,389 - 46,910,354 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36146,752,090 - 46,798,055 (-)NCBIMGSCv36mm8
Celera147,145,316 - 47,190,906 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
Slc39a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554034,426,538 - 4,479,693 (-)NCBIChiLan1.0ChiLan1.0
SLC39A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B200,736,327 - 200,883,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B200,805,459 - 200,883,524 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B82,823,472 - 82,981,894 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC39A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1375,482,200 - 5,521,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl375,482,177 - 5,521,110 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha376,325,793 - 6,462,496 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0375,271,185 - 5,408,052 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl375,270,867 - 5,408,045 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1375,272,054 - 5,408,755 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0375,244,321 - 5,380,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0375,260,580 - 5,397,312 (+)NCBIUU_Cfam_GSD_1.0
Slc39a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303153,412,914 - 153,539,813 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365063,298,245 - 3,396,291 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365063,298,259 - 3,425,126 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1599,584,872 - 99,724,611 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11599,584,830 - 99,724,621 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC39A10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11081,143,658 - 81,273,010 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1081,187,587 - 81,273,749 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040118,172,530 - 118,298,973 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248541,163,025 - 1,280,717 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc39a10
545 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:124
Interacting mature miRNAs:133
Transcripts:ENSRNOT00000016262
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat

Markers in Region
RH127346  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2954,960,485 - 54,960,700 (+)MAPPERmRatBN7.2
Rnor_6.0960,070,710 - 60,070,924NCBIRnor6.0
Rnor_5.0959,758,383 - 59,758,597UniSTSRnor5.0
RGSC_v3.4952,217,942 - 52,218,156UniSTSRGSC3.4
Celera952,463,204 - 52,463,418UniSTS
Cytogenetic Map9q22UniSTS
RH143016  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2954,957,917 - 54,958,028 (+)MAPPERmRatBN7.2
Rnor_6.0960,068,142 - 60,068,252NCBIRnor6.0
Rnor_5.0959,755,815 - 59,755,925UniSTSRnor5.0
RGSC_v3.4952,215,374 - 52,215,484UniSTSRGSC3.4
Celera952,460,636 - 52,460,746UniSTS
Cytogenetic Map9q22UniSTS
BF413432  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2954,929,310 - 54,929,421 (+)MAPPERmRatBN7.2
Rnor_6.0960,039,891 - 60,040,001NCBIRnor6.0
Rnor_5.0959,727,564 - 59,727,674UniSTSRnor5.0
RGSC_v3.4952,186,769 - 52,186,879UniSTSRGSC3.4
Celera952,432,055 - 52,432,165UniSTS
Cytogenetic Map9q22UniSTS
RH137127  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2954,912,720 - 54,912,901 (+)MAPPERmRatBN7.2
Rnor_6.0960,023,253 - 60,023,433NCBIRnor6.0
Rnor_5.0959,710,926 - 59,711,106UniSTSRnor5.0
RGSC_v3.4952,169,266 - 52,169,446UniSTSRGSC3.4
Celera952,415,465 - 52,415,645UniSTS
Cytogenetic Map9q22UniSTS
DNAH7__4760  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2954,960,253 - 54,960,666 (+)MAPPERmRatBN7.2
Rnor_6.0960,070,478 - 60,070,890NCBIRnor6.0
Rnor_5.0959,758,151 - 59,758,563UniSTSRnor5.0
RGSC_v3.4952,217,710 - 52,218,122UniSTSRGSC3.4
Celera952,462,972 - 52,463,384UniSTS
Cytogenetic Map9q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 26 22 6 19 6 1 1 74 30 41 11 1
Low 2 17 35 35 35 7 10 5 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000016262   ⟹   ENSRNOP00000016262
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl954,876,141 - 54,960,325 (+)Ensembl
Rnor_6.0 Ensembl960,039,297 - 60,070,552 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093343
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl960,049,001 - 60,050,443 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093748   ⟹   ENSRNOP00000076105
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl954,911,002 - 54,960,325 (+)Ensembl
Rnor_6.0 Ensembl960,021,534 - 60,068,488 (+)Ensembl
RefSeq Acc Id: NM_001108796   ⟹   NP_001102266
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2954,911,002 - 54,960,325 (+)NCBI
Rnor_6.0960,021,534 - 60,070,549 (+)NCBI
RGSC_v3.4952,168,107 - 52,217,677 (+)RGD
Celera952,413,746 - 52,463,043 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006244936   ⟹   XP_006244998
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2954,876,044 - 54,960,312 (+)NCBI
Rnor_6.0959,986,123 - 60,070,549 (+)NCBI
Rnor_5.0959,634,923 - 59,758,222 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083852   ⟹   XP_038939780
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2954,875,980 - 54,960,325 (+)NCBI
RefSeq Acc Id: XM_039083853   ⟹   XP_038939781
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2954,907,918 - 54,958,151 (+)NCBI
RefSeq Acc Id: XM_039083855   ⟹   XP_038939783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2954,836,841 - 54,958,151 (+)NCBI
RefSeq Acc Id: XM_039083856   ⟹   XP_038939784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2954,911,959 - 54,958,151 (+)NCBI
RefSeq Acc Id: XM_039083857   ⟹   XP_038939785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2954,921,596 - 54,958,151 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102266   ⟸   NM_001108796
- Peptide Label: precursor
- UniProtKB: D4A517 (UniProtKB/TrEMBL),   A0A1W2Q626 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244998   ⟸   XM_006244936
- Peptide Label: isoform X2
- UniProtKB: D4A517 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016262   ⟸   ENSRNOT00000016262
RefSeq Acc Id: ENSRNOP00000076105   ⟸   ENSRNOT00000093748
RefSeq Acc Id: XP_038939783   ⟸   XM_039083855
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939780   ⟸   XM_039083852
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939781   ⟸   XM_039083853
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939784   ⟸   XM_039083856
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939785   ⟸   XM_039083857
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A517-F1-model_v2 AlphaFold D4A517 1-834 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307321 AgrOrtholog
BioCyc Gene G2FUF-27559 BioCyc
Ensembl Genes ENSRNOG00000011677 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000016262 ENTREZGENE
  ENSRNOP00000016262.6 UniProtKB/TrEMBL
  ENSRNOP00000076105 ENTREZGENE
  ENSRNOP00000076105.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016262 ENTREZGENE
  ENSRNOT00000016262.8 UniProtKB/TrEMBL
  ENSRNOT00000093748 ENTREZGENE
  ENSRNOT00000093748.2 UniProtKB/TrEMBL
InterPro ZIP UniProtKB/TrEMBL
KEGG Report rno:363229 UniProtKB/TrEMBL
NCBI Gene 363229 ENTREZGENE
Pfam Zip UniProtKB/TrEMBL
PhenoGen Slc39a10 PhenoGen
UniProt A0A1W2Q626 ENTREZGENE, UniProtKB/TrEMBL
  D4A517 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc39a10  solute carrier family 39 member 10  Slc39a10  solute carrier family 39 (zinc transporter), member 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-01-06 Slc39a10  solute carrier family 39 (zinc transporter), member 10  Slc39a10_predicted  solute carrier family 39 (zinc transporter), member 10 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Slc39a10_predicted  solute carrier family 39 (zinc transporter), member 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED