Dnah7 (dynein, axonemal, heavy chain 7) - Rat Genome Database
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Gene: Dnah7 (dynein, axonemal, heavy chain 7) Rattus norvegicus
Analyze
Symbol: Dnah7
Name: dynein, axonemal, heavy chain 7
RGD ID: 621798
Description: Predicted to have ATP-dependent microtubule motor activity, minus-end-directed; dynein intermediate chain binding activity; and dynein light intermediate chain binding activity. Predicted to be involved in cilium movement and inner dynein arm assembly. Predicted to localize to cytosol and inner dynein arm. Orthologous to human DNAH7 (dynein axonemal heavy chain 7); INTERACTS WITH bisphenol A; cefaloridine; linsidomine.
Type: protein-coding
RefSeq Status: MODEL
Also known as: axo b; axonemal beta dynein heavy chain 7; axonemal dynein heavy chain b; calcyclin binding protein; ciliary dynein heavy chain 7; dynein heavy chain 7, axonemal; dynein, axonemal, heavy polypeptide 7; dynein-like protein 7; LOC363230; LOW QUALITY PROTEIN: dynein heavy chain 7, axonemal
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0959,564,253 - 59,595,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0960,070,087 - 60,330,121 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl960,070,739 - 60,330,125 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl959,564,498 - 59,594,416 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0959,757,260 - 60,016,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0959,254,229 - 59,284,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4952,217,861 - 52,520,698 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1952,401,330 - 52,410,054 (-)NCBI
Celera952,462,581 - 52,758,315 (-)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cilium  (IEA,ISO)
cytoplasm  (IEA)
cytosol  (IEA,ISO)
dynein complex  (IBA,IEA)
inner dynein arm  (IBA,IEA,ISO)
microtubule  (IEA)

References

Additional References at PubMed
PMID:8741840   PMID:11877439  


Genomics

Comparative Map Data
Dnah7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0959,564,253 - 59,595,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0960,070,087 - 60,330,121 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl960,070,739 - 60,330,125 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl959,564,498 - 59,594,416 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0959,757,260 - 60,016,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0959,254,229 - 59,284,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4952,217,861 - 52,520,698 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1952,401,330 - 52,410,054 (-)NCBI
Celera952,462,581 - 52,758,315 (-)NCBICelera
Cytogenetic Map9q31NCBI
DNAH7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2195,737,703 - 196,068,837 (-)EnsemblGRCh38hg38GRCh38
GRCh382195,737,604 - 196,068,837 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372196,602,427 - 196,933,536 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362196,310,672 - 196,641,781 (-)NCBINCBI36hg18NCBI36
Build 342196,427,933 - 196,759,037NCBI
Celera2190,358,292 - 190,689,358 (-)NCBI
Cytogenetic Map2q32.3NCBI
HuRef2188,455,231 - 188,786,327 (-)NCBIHuRef
CHM1_12196,608,723 - 196,939,431 (-)NCBICHM1_1
Dnah7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39146,105,232 - 46,412,711 (+)NCBIGRCm39mm39
GRCm38146,066,071 - 46,373,551 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl146,066,315 - 46,373,550 (+)EnsemblGRCm38mm10GRCm38
MGSCv37146,123,583 - 46,430,395 (+)NCBIGRCm37mm9NCBIm37
MGSCv36146,011,284 - 46,318,090 (+)NCBImm8
Celera146,409,716 - 46,718,671 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
Dnah7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554034,189,887 - 4,426,399 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554034,189,887 - 4,426,405 (+)NCBIChiLan1.0ChiLan1.0
DNAH7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B200,883,535 - 201,204,307 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B200,883,742 - 201,200,239 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B82,981,765 - 83,314,338 (-)NCBIMhudiblu_PPA_v0panPan3
DNAH7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl375,521,147 - 5,760,277 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1375,521,106 - 5,760,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dnah7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365063,001,304 - 3,298,241 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAH7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1599,724,828 - 99,987,004 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11599,722,278 - 99,987,348 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215110,692,095 - 110,841,024 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAH7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11081,272,913 - 81,615,943 (-)NCBI
ChlSab1.1 Ensembl1081,269,432 - 81,604,013 (-)Ensembl
Dnah7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624854912,986 - 1,180,639 (+)NCBI

Position Markers
D9Rat22  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0960,142,282 - 60,142,421NCBIRnor6.0
Rnor_5.0959,829,608 - 59,829,747UniSTSRnor5.0
RGSC_v3.4952,292,953 - 52,293,093UniSTSRGSC3.4
RGSC_v3.4952,292,952 - 52,293,093RGDRGSC3.4
RGSC_v3.1952,294,366 - 52,294,507RGD
Celera952,536,220 - 52,536,332UniSTS
Cytogenetic Map9q22UniSTS
RH 2.0 Map9514.6RGD
SHRSP x BN Map941.0298RGD
RH127346  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0960,070,710 - 60,070,924NCBIRnor6.0
Rnor_5.0959,758,383 - 59,758,597UniSTSRnor5.0
RGSC_v3.4952,217,942 - 52,218,156UniSTSRGSC3.4
Celera952,463,204 - 52,463,418UniSTS
Cytogenetic Map9q22UniSTS
DNAH7__4760  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0960,070,478 - 60,070,890NCBIRnor6.0
Rnor_5.0959,758,151 - 59,758,563UniSTSRnor5.0
RGSC_v3.4952,217,710 - 52,218,122UniSTSRGSC3.4
Celera952,462,972 - 52,463,384UniSTS
Cytogenetic Map9q22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9105522293442944Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92488509969885099Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92569234292741406Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92569237370692373Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92748603663264281Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92748603666757620Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92748615588333183Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92907507983686404Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)929466970107878528Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93238513377385133Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93764235182642351Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93764235182642351Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)94126103490024806Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94126103498606834Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)941261034102531865Rat
6903941Pur31Proteinuria QTL 310.036total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94657976991579769Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94657976991579769Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94695242783686153Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94724896594124663Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95417754299177542Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95488504176677636Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 9 2
Low 10 2 33 25 27 18
Below cutoff 4 33 39 26 16 26 7 7 72 11 26 2 7

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006244944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07067728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07067736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07067737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07067738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07067739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01060078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D26498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U32180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000081963
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl959,564,498 - 59,594,416 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092162   ⟹   ENSRNOP00000070606
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl960,070,741 - 60,330,086 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093630   ⟹   ENSRNOP00000076106
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl960,271,917 - 60,330,125 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093710   ⟹   ENSRNOP00000076089
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl960,070,739 - 60,255,746 (-)Ensembl
RefSeq Acc Id: XM_006244944   ⟹   XP_006245006
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0959,564,253 - 59,595,347 (-)NCBI
Rnor_5.0959,254,229 - 59,284,368 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008758049   ⟹   XP_008756271
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera952,462,581 - 52,758,315 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767151   ⟹   XP_008765373
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0959,564,253 - 59,595,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596807   ⟹   XP_017452296
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0960,070,087 - 60,330,121 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_006245006   ⟸   XM_006244944
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008756271   ⟸   XM_008758049
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008765373   ⟸   XM_008767151
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017452296   ⟸   XM_017596807
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000070606   ⟸   ENSRNOT00000092162
RefSeq Acc Id: ENSRNOP00000076106   ⟸   ENSRNOT00000093630
RefSeq Acc Id: ENSRNOP00000076089   ⟸   ENSRNOT00000093710
Protein Domains
DHC_N2   EF-hand

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621798 AgrOrtholog
Ensembl Genes ENSRNOG00000052194 Ensembl, ENTREZGENE
  ENSRNOG00000060984 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000070606 UniProtKB/TrEMBL
  ENSRNOP00000076089 UniProtKB/TrEMBL
  ENSRNOP00000076106 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081963 ENTREZGENE
  ENSRNOT00000092162 UniProtKB/TrEMBL
  ENSRNOT00000093630 UniProtKB/TrEMBL
  ENSRNOT00000093710 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.710 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.8.720 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.140.100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.10.490.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.20.180.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_lid_11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_lid_11_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DHC_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNAH3_AAA_lid_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_AAA1S UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_AAA5_ext UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_C_barrel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_HC_stalk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_heavy_chain_D4_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_heavy_D6_P-loop UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_heavy_dom-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 252893 ENTREZGENE
PANTHER PTHR10676 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AAA_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_lid_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_lid_11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DHC_N2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_AAA_lid UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_heavy UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF12777 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dnah7 PhenoGen
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Rn.232718 ENTREZGENE
UniProt A0A0G2JYD0_RAT UniProtKB/TrEMBL
  A0A1W2Q612_RAT UniProtKB/TrEMBL
  A0A1W2Q624_RAT UniProtKB/TrEMBL
  DYH7_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q62821 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-16 Dnah7  dynein, axonemal, heavy chain 7  Dnah7  dynein, axonemal, heavy polypeptide 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-15 Dnah7  dynein, axonemal, heavy polypeptide 7  Dnah7_predicted  dynein, axonemal, heavy polypeptide 7 (predicted)  Data Merged 1643240 APPROVED
2005-01-20 Dnah7  dynein, axonemal, heavy polypeptide 7      Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Dnah7_predicted  dynein, axonemal, heavy polypeptide 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED
2002-08-07 Dnah7  dynein, axonemal, heavy polypeptide 7      Symbol and Name status set to provisional 70820 PROVISIONAL