Hycc2 (hyccin PI4KA lipid kinase complex subunit 2) - Rat Genome Database

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Gene: Hycc2 (hyccin PI4KA lipid kinase complex subunit 2) Rattus norvegicus
Analyze
Symbol: Hycc2
Name: hyccin PI4KA lipid kinase complex subunit 2
RGD ID: 1309752
Description: Predicted to be involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Predicted to be located in cytosol and membrane. Predicted to be active in plasma membrane. Orthologous to human HYCC2 (hyccin PI4KA lipid kinase complex subunit 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam126b; family with sequence similarity 126, member B; hyccin 2; hypothetical protein LOC316415; LOC316415; MGC116143; RGD1309752; similar to hypothetical protein D630010C10; uncharacterized protein LOC316415
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,551,064 - 67,623,353 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl967,551,064 - 67,587,186 (-)EnsemblGRCr8
mRatBN7.2960,056,883 - 60,129,176 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl960,056,890 - 60,093,007 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx968,551,324 - 68,623,553 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,667,255 - 73,739,498 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,985,327 - 72,057,759 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0965,406,136 - 65,478,399 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl965,406,138 - 65,442,257 (-)Ensemblrn6Rnor6.0
Rnor_5.0965,213,173 - 65,285,837 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4957,180,410 - 57,252,641 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera957,499,544 - 57,570,448 (-)NCBICelera
RGSC_v3.1957,327,391 - 57,399,623 (-)NCBI
Cytogenetic Map9q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
amitrole  (EXP)
amphetamine  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
diethyl maleate  (EXP)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
indometacin  (ISO)
leflunomide  (ISO)
methamphetamine  (EXP)
methapyrilene  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
rimonabant  (ISO)
SCH 23390  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tetrachloroethene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Hycc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,551,064 - 67,623,353 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl967,551,064 - 67,587,186 (-)EnsemblGRCr8
mRatBN7.2960,056,883 - 60,129,176 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl960,056,890 - 60,093,007 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx968,551,324 - 68,623,553 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,667,255 - 73,739,498 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0971,985,327 - 72,057,759 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0965,406,136 - 65,478,399 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl965,406,138 - 65,442,257 (-)Ensemblrn6Rnor6.0
Rnor_5.0965,213,173 - 65,285,837 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4957,180,410 - 57,252,641 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera957,499,544 - 57,570,448 (-)NCBICelera
RGSC_v3.1957,327,391 - 57,399,623 (-)NCBI
Cytogenetic Map9q31NCBI
HYCC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382200,973,718 - 201,071,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2200,973,718 - 201,071,671 (-)Ensemblhg38GRCh38
GRCh372201,838,441 - 201,936,394 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,552,032 - 201,644,637 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2195,593,067 - 195,691,017 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2193,689,774 - 193,787,896 (-)NCBIHuRef
CHM1_12201,844,437 - 201,942,410 (-)NCBICHM1_1
T2T-CHM13v2.02201,457,164 - 201,555,113 (-)NCBIT2T-CHM13v2.0
Hycc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,561,965 - 58,625,492 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,561,965 - 58,625,482 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38158,522,806 - 58,586,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,522,806 - 58,586,323 (-)Ensemblmm10GRCm38
MGSCv37158,579,650 - 58,643,177 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36158,471,779 - 58,510,500 (-)NCBIMGSCv36mm8
Celera159,040,768 - 59,105,918 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.12NCBI
Hycc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955403483,675 - 564,503 (+)Ensembl
ChiLan1.0NW_004955403483,671 - 564,509 (+)NCBIChiLan1.0ChiLan1.0
HYCC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213103,600,605 - 103,698,737 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B103,615,604 - 103,713,736 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B88,231,222 - 88,329,311 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B206,390,867 - 206,487,787 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B206,395,627 - 206,487,785 (-)EnsemblpanPan2panpan1.1
HYCC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13710,162,728 - 10,240,061 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3710,169,973 - 10,238,994 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3711,047,940 - 11,125,445 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03710,068,399 - 10,110,212 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3710,068,619 - 10,145,308 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13710,049,686 - 10,127,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03710,027,455 - 10,105,121 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03710,021,429 - 10,098,943 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hycc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303158,291,456 - 158,367,824 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936726268,873 - 338,048 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936726261,530 - 338,105 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HYCC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,665,729 - 104,747,567 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115104,665,720 - 104,747,688 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215116,039,889 - 116,072,168 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HYCC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,645,109 - 86,723,148 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1086,644,742 - 86,723,138 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040112,696,185 - 112,780,209 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hycc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624889141,657 - 208,518 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Hycc2
123 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:407
Count of miRNA genes:232
Interacting mature miRNAs:266
Transcripts:ENSRNOT00000037660
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat

Markers in Region
RH129968  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2960,060,117 - 60,060,321 (+)MAPPERmRatBN7.2
Rnor_6.0965,409,366 - 65,409,569NCBIRnor6.0
Rnor_5.0965,216,403 - 65,216,606UniSTSRnor5.0
RGSC_v3.4957,183,640 - 57,183,843UniSTSRGSC3.4
Celera957,502,774 - 57,502,977UniSTS
RH 3.4 Map9493.6UniSTS
Cytogenetic Map9q31UniSTS
RH137745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2960,061,806 - 60,061,936 (+)MAPPERmRatBN7.2
Rnor_6.0965,411,055 - 65,411,184NCBIRnor6.0
Rnor_5.0965,218,092 - 65,218,221UniSTSRnor5.0
RGSC_v3.4957,185,329 - 57,185,458UniSTSRGSC3.4
Celera957,504,463 - 57,504,592UniSTS
RH 3.4 Map9480.4UniSTS
Cytogenetic Map9q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000037660   ⟹   ENSRNOP00000033249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl967,551,071 - 67,587,186 (-)Ensembl
mRatBN7.2 Ensembl960,056,890 - 60,093,007 (-)Ensembl
Rnor_6.0 Ensembl965,406,138 - 65,442,257 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098396   ⟹   ENSRNOP00000087875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl967,551,064 - 67,587,186 (-)Ensembl
mRatBN7.2 Ensembl960,057,018 - 60,093,007 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118168   ⟹   ENSRNOP00000082000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl967,551,064 - 67,587,186 (-)Ensembl
mRatBN7.2 Ensembl960,060,069 - 60,093,007 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000162115   ⟹   ENSRNOP00000108238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl967,556,832 - 67,587,186 (-)Ensembl
RefSeq Acc Id: NM_001025710   ⟹   NP_001020881
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,297 (-)NCBI
mRatBN7.2960,056,883 - 60,129,120 (-)NCBI
Rnor_6.0965,406,136 - 65,478,368 (-)NCBI
Rnor_5.0965,213,173 - 65,285,837 (-)NCBI
RGSC_v3.4957,180,410 - 57,252,641 (-)RGD
Celera957,499,544 - 57,570,448 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244983   ⟹   XP_006245045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,353 (-)NCBI
mRatBN7.2960,056,883 - 60,129,176 (-)NCBI
Rnor_6.0965,410,646 - 65,478,398 (-)NCBI
Rnor_5.0965,213,173 - 65,285,837 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244984   ⟹   XP_006245046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,353 (-)NCBI
mRatBN7.2960,056,883 - 60,129,176 (-)NCBI
Rnor_6.0965,410,646 - 65,478,397 (-)NCBI
Rnor_5.0965,213,173 - 65,285,837 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596454   ⟹   XP_017451943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,353 (-)NCBI
mRatBN7.2960,056,883 - 60,129,176 (-)NCBI
Rnor_6.0965,410,646 - 65,478,399 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596455   ⟹   XP_017451944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,340 (-)NCBI
mRatBN7.2960,056,883 - 60,129,149 (-)NCBI
Rnor_6.0965,410,646 - 65,478,393 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596458   ⟹   XP_017451947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,219 (-)NCBI
mRatBN7.2960,056,883 - 60,129,046 (-)NCBI
Rnor_6.0965,410,646 - 65,478,297 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083620   ⟹   XP_038939548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,340 (-)NCBI
mRatBN7.2960,056,883 - 60,129,149 (-)NCBI
RefSeq Acc Id: XM_039083623   ⟹   XP_038939551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,558,293 - 67,623,353 (-)NCBI
mRatBN7.2960,064,114 - 60,129,171 (-)NCBI
RefSeq Acc Id: XM_063267184   ⟹   XP_063123254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,339 (-)NCBI
RefSeq Acc Id: XM_063267185   ⟹   XP_063123255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,338 (-)NCBI
RefSeq Acc Id: XM_063267186   ⟹   XP_063123256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,623,253 (-)NCBI
RefSeq Acc Id: XM_063267187   ⟹   XP_063123257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8967,551,064 - 67,587,121 (-)NCBI
RefSeq Acc Id: NP_001020881   ⟸   NM_001025710
- UniProtKB: A0A8I6A5B0 (UniProtKB/TrEMBL),   A6IP75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245045   ⟸   XM_006244983
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZT89 (UniProtKB/TrEMBL),   A6IP75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245046   ⟸   XM_006244984
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A5B0 (UniProtKB/TrEMBL),   A6IP75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451943   ⟸   XM_017596454
- Peptide Label: isoform X1
- UniProtKB: A6IP75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451944   ⟸   XM_017596455
- Peptide Label: isoform X1
- UniProtKB: A6IP75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451947   ⟸   XM_017596458
- Peptide Label: isoform X1
- UniProtKB: A6IP75 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033249   ⟸   ENSRNOT00000037660
RefSeq Acc Id: XP_038939548   ⟸   XM_039083620
- Peptide Label: isoform X1
- UniProtKB: A6IP75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939551   ⟸   XM_039083623
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000087875   ⟸   ENSRNOT00000098396
Ensembl Acc Id: ENSRNOP00000082000   ⟸   ENSRNOT00000118168
RefSeq Acc Id: XP_063123254   ⟸   XM_063267184
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A5B0 (UniProtKB/TrEMBL),   A6IP75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123255   ⟸   XM_063267185
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A5B0 (UniProtKB/TrEMBL),   A6IP75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123256   ⟸   XM_063267186
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A5B0 (UniProtKB/TrEMBL),   A6IP75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123257   ⟸   XM_063267187
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000108238   ⟸   ENSRNOT00000162115

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V7D4-F1-model_v2 AlphaFold Q4V7D4 1-456 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309752 AgrOrtholog
BioCyc Gene G2FUF-27445 BioCyc
Ensembl Genes ENSRNOG00000025079 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037660.4 UniProtKB/TrEMBL
  ENSRNOT00000098396 ENTREZGENE
  ENSRNOT00000098396.1 UniProtKB/TrEMBL
  ENSRNOT00000118168 ENTREZGENE
  ENSRNOT00000118168.1 UniProtKB/TrEMBL
  ENSRNOT00000162115 ENTREZGENE
IMAGE_CLONE IMAGE:7453086 IMAGE-MGC_LOAD
InterPro Hyccin UniProtKB/TrEMBL
KEGG Report rno:316415 UniProtKB/TrEMBL
MGC_CLONE MGC:116143 IMAGE-MGC_LOAD
NCBI Gene 316415 ENTREZGENE
PANTHER PROTEIN FAM126B UniProtKB/TrEMBL
  PTHR31220 UniProtKB/TrEMBL
Pfam Hyccin UniProtKB/TrEMBL
PhenoGen Hycc2 PhenoGen
RatGTEx ENSRNOG00000025079 RatGTEx
UniProt A0A8I5ZT89 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5B0 ENTREZGENE, UniProtKB/TrEMBL
  A6IP75 ENTREZGENE, UniProtKB/TrEMBL
  Q4V7D4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-29 Hycc2  hyccin PI4KA lipid kinase complex subunit 2  Fam126b  family with sequence similarity 126, member B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Fam126b  family with sequence similarity 126, member B  RGD1309752  similar to hypothetical protein D630010C10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309752  similar to hypothetical protein D630010C10  RGD1309752_predicted  similar to hypothetical protein D630010C10 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309752_predicted  similar to hypothetical protein D630010C10 (predicted)  LOC316415_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC316415_predicted  similar to hypothetical protein D630010C10 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL