Fam117b (family with sequence similarity 117, member B) - Rat Genome Database

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Gene: Fam117b (family with sequence similarity 117, member B) Rattus norvegicus
Analyze
Symbol: Fam117b
Name: family with sequence similarity 117, member B
RGD ID: 1307676
Description: Orthologous to human FAM117B (family with sequence similarity 117 member B); INTERACTS WITH 2,3,4,7,8-Pentachlorodibenzofuran; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Als2cr13; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (human); LOC363236
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2961,340,291 - 61,418,531 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,340,249 - 61,408,483 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx969,840,399 - 69,908,549 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0974,955,951 - 75,024,103 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0973,274,661 - 73,342,815 (+)NCBIRnor_WKY
Rnor_6.0966,716,969 - 66,784,487 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,716,969 - 66,784,487 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,520,071 - 66,596,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,476,287 - 58,544,228 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1958,622,696 - 58,688,285 (+)NCBI
Celera958,775,417 - 58,842,774 (+)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,4,7,8-Pentachlorodibenzofuran  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hexadecanoic acid  (ISO)
hydrogen cyanide  (ISO)
hydroquinone  (ISO)
iron atom  (EXP)
iron(0)  (EXP)
isoprenaline  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (EXP)
phenformin  (EXP)
phenylmercury acetate  (ISO)
potassium cyanide  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

Comparative Map Data
Fam117b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2961,340,291 - 61,418,531 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,340,249 - 61,408,483 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx969,840,399 - 69,908,549 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0974,955,951 - 75,024,103 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0973,274,661 - 73,342,815 (+)NCBIRnor_WKY
Rnor_6.0966,716,969 - 66,784,487 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,716,969 - 66,784,487 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,520,071 - 66,596,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,476,287 - 58,544,228 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1958,622,696 - 58,688,285 (+)NCBI
Celera958,775,417 - 58,842,774 (+)NCBICelera
Cytogenetic Map9q31NCBI
FAM117B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382202,634,969 - 202,769,757 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2202,634,969 - 202,769,757 (+)EnsemblGRCh38hg38GRCh38
GRCh372203,499,692 - 203,634,480 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362203,208,456 - 203,342,725 (+)NCBINCBI36Build 36hg18NCBI36
Celera2197,252,014 - 197,387,230 (+)NCBICelera
Cytogenetic Map2q33.2NCBI
HuRef2195,346,934 - 195,481,383 (+)NCBIHuRef
CHM1_12203,506,619 - 203,641,107 (+)NCBICHM1_1
T2T-CHM13v2.02203,116,388 - 203,251,211 (+)NCBIT2T-CHM13v2.0
Fam117b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,952,165 - 60,024,507 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl159,952,165 - 60,024,505 (+)EnsemblGRCm39 Ensembl
GRCm38159,913,006 - 59,985,348 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,913,006 - 59,985,346 (+)EnsemblGRCm38mm10GRCm38
MGSCv37159,969,850 - 60,042,190 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36159,857,552 - 59,929,893 (+)NCBIMGSCv36mm8
Celera160,428,884 - 60,500,816 (+)NCBICelera
Cytogenetic Map1C2NCBI
Fam117b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545712,107,141 - 12,180,614 (-)NCBIChiLan1.0ChiLan1.0
FAM117B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan12B105,280,920 - 105,415,187 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B89,896,400 - 90,030,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B208,043,335 - 208,177,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B208,042,146 - 208,173,180 (+)Ensemblpanpan1.1panPan2
FAM117B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13711,583,542 - 11,668,488 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3711,583,684 - 11,661,903 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3712,467,063 - 12,552,009 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03711,520,177 - 11,605,348 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3711,520,315 - 11,599,177 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,476,433 - 11,561,749 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,448,107 - 11,533,023 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,441,918 - 11,526,872 (+)NCBIUU_Cfam_GSD_1.0
Fam117b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303159,783,034 - 159,876,695 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367261,753,652 - 1,843,405 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049367261,753,318 - 1,846,977 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM117B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15106,183,205 - 106,284,313 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115106,183,217 - 106,284,318 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215117,639,859 - 117,740,819 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM117B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11088,370,979 - 88,513,138 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040110,878,963 - 111,018,660 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam117b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476513,701,345 - 13,782,952 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476513,661,928 - 13,782,962 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam117b
327 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:967
Count of miRNA genes:344
Interacting mature miRNAs:458
Transcripts:ENSRNOT00000031261
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)94996854671098346Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1578659Tspe1Trichinella spiralis expulsion QTL 14.8parasite quantity (VT:0010441)logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)96138143465691299Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat

Markers in Region
D9Rat16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,381,434 - 61,381,613 (+)MAPPERmRatBN7.2
Rnor_6.0966,757,444 - 66,757,620NCBIRnor6.0
Rnor_5.0966,570,118 - 66,570,294UniSTSRnor5.0
RGSC_v3.4958,516,720 - 58,516,896UniSTSRGSC3.4
RGSC_v3.4958,516,719 - 58,516,896RGDRGSC3.4
RGSC_v3.1958,663,702 - 58,663,878RGD
Celera958,815,886 - 58,816,062UniSTS
RH 3.4 Map9495.2RGD
RH 3.4 Map9495.2UniSTS
RH 2.0 Map9574.9RGD
SHRSP x BN Map942.2298RGD
Cytogenetic Map9q31UniSTS
RH133076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,408,705 - 61,408,916 (+)MAPPERmRatBN7.2
Rnor_6.0966,784,710 - 66,784,920NCBIRnor6.0
Rnor_5.0966,596,579 - 66,596,789UniSTSRnor5.0
RGSC_v3.4958,544,451 - 58,544,661UniSTSRGSC3.4
Celera958,842,997 - 58,843,207UniSTS
RH 3.4 Map9515.3UniSTS
Cytogenetic Map9q31UniSTS
BE107857  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,390,173 - 61,390,366 (+)MAPPERmRatBN7.2
Rnor_6.0966,766,179 - 66,766,371NCBIRnor6.0
Rnor_5.0966,578,074 - 66,578,266UniSTSRnor5.0
RGSC_v3.4958,525,452 - 58,525,644UniSTSRGSC3.4
Celera958,824,453 - 58,824,645UniSTS
RH 3.4 Map9495.8UniSTS
Cytogenetic Map9q31UniSTS
RH137964  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,397,122 - 61,397,330 (+)MAPPERmRatBN7.2
Rnor_6.0966,773,127 - 66,773,334NCBIRnor6.0
Rnor_5.0966,585,022 - 66,585,229UniSTSRnor5.0
RGSC_v3.4958,532,400 - 58,532,607UniSTSRGSC3.4
Celera958,831,401 - 58,831,608UniSTS
RH 3.4 Map9514.9UniSTS
Cytogenetic Map9q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 14 32 16 19 16 74 35 37 11
Low 29 25 25 25 8 11 4 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000031261   ⟹   ENSRNOP00000029910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,340,249 - 61,408,483 (+)Ensembl
Rnor_6.0 Ensembl966,716,969 - 66,784,487 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111864   ⟹   ENSRNOP00000083133
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,340,249 - 61,408,483 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113257   ⟹   ENSRNOP00000093486
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,340,269 - 61,406,212 (+)Ensembl
RefSeq Acc Id: NM_001108797   ⟹   NP_001102267
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2961,340,953 - 61,408,483 (+)NCBI
Rnor_6.0966,716,969 - 66,784,487 (+)NCBI
Rnor_5.0966,520,071 - 66,596,356 (+)NCBI
RGSC_v3.4958,476,287 - 58,544,228 (+)RGD
Celera958,775,417 - 58,842,774 (+)RGD
Sequence:
RefSeq Acc Id: XM_039083858   ⟹   XP_038939786
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2961,340,291 - 61,408,485 (+)NCBI
RefSeq Acc Id: XM_039083859   ⟹   XP_038939787
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2961,340,291 - 61,418,531 (+)NCBI
RefSeq Acc Id: XM_039083860   ⟹   XP_038939788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2961,341,104 - 61,408,485 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102267 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939786 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939787 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939788 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL98943 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001102267   ⟸   NM_001108797
- UniProtKB: F1M8D5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029910   ⟸   ENSRNOT00000031261
RefSeq Acc Id: XP_038939787   ⟸   XM_039083859
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939786   ⟸   XM_039083858
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939788   ⟸   XM_039083860
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000083133   ⟸   ENSRNOT00000111864
RefSeq Acc Id: ENSRNOP00000093486   ⟸   ENSRNOT00000113257

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8D5-F1-model_v2 AlphaFold F1M8D5 1-345 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307676 AgrOrtholog
BioCyc Gene G2FUF-27389 BioCyc
Ensembl Genes ENSRNOG00000022066 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000029910.6 UniProtKB/TrEMBL
  ENSRNOP00000083133 ENTREZGENE
  ENSRNOP00000083133.1 UniProtKB/TrEMBL
  ENSRNOP00000093486.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031261.6 UniProtKB/TrEMBL
  ENSRNOT00000111864 ENTREZGENE
  ENSRNOT00000111864.1 UniProtKB/TrEMBL
  ENSRNOT00000113257.1 UniProtKB/TrEMBL
InterPro Glcci1/FAM117 UniProtKB/TrEMBL
KEGG Report rno:363236 UniProtKB/TrEMBL
NCBI Gene 363236 ENTREZGENE
PANTHER PTHR14972 UniProtKB/TrEMBL
  PTHR14972:SF6 UniProtKB/TrEMBL
Pfam FAM117 UniProtKB/TrEMBL
PhenoGen Fam117b PhenoGen
UniProt A0A8I5ZYM6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALF3_RAT UniProtKB/TrEMBL
  F1M8D5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Fam117b  family with sequence similarity 117, member B  Als2cr13  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Als2cr13  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (human)  Als2cr13  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Als2cr13  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13  Als2cr13_predicted  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Als2cr13_predicted  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED