FAM117B (family with sequence similarity 117 member B) - Rat Genome Database

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Gene: FAM117B (family with sequence similarity 117 member B) Pan paniscus
Analyze
Symbol: FAM117B
Name: family with sequence similarity 117 member B
RGD ID: 11940215
Description: ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); common variable immunodeficiency 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213105,265,851 - 105,400,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B105,280,848 - 105,415,187 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B89,896,400 - 90,030,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B208,043,335 - 208,177,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B208,042,146 - 208,173,180 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
FAM117B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213105,265,851 - 105,400,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B105,280,848 - 105,415,187 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B89,896,400 - 90,030,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B208,043,335 - 208,177,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B208,042,146 - 208,173,180 (+)Ensemblpanpan1.1panPan2
FAM117B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382202,634,969 - 202,769,757 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2202,634,969 - 202,769,757 (+)EnsemblGRCh38hg38GRCh38
GRCh372203,499,692 - 203,634,480 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362203,208,456 - 203,342,725 (+)NCBINCBI36Build 36hg18NCBI36
Celera2197,252,014 - 197,387,230 (+)NCBICelera
Cytogenetic Map2q33.2NCBI
HuRef2195,346,934 - 195,481,383 (+)NCBIHuRef
CHM1_12203,506,619 - 203,641,107 (+)NCBICHM1_1
T2T-CHM13v2.02203,116,388 - 203,251,211 (+)NCBIT2T-CHM13v2.0
Fam117b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,952,165 - 60,024,507 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl159,952,165 - 60,024,505 (+)EnsemblGRCm39 Ensembl
GRCm38159,913,006 - 59,985,348 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,913,006 - 59,985,346 (+)EnsemblGRCm38mm10GRCm38
MGSCv37159,969,850 - 60,042,190 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36159,857,552 - 59,929,893 (+)NCBIMGSCv36mm8
Celera160,428,884 - 60,500,816 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.44NCBI
Fam117b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8968,834,334 - 68,902,543 (+)NCBIGRCr8
mRatBN7.2961,340,284 - 61,418,531 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,340,249 - 61,408,483 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx969,840,399 - 69,908,549 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0974,955,951 - 75,024,103 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,274,661 - 73,342,815 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0966,716,969 - 66,784,487 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,716,969 - 66,784,487 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,520,071 - 66,596,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,476,287 - 58,544,228 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1958,622,696 - 58,688,285 (+)NCBI
Celera958,775,417 - 58,842,774 (+)NCBICelera
Cytogenetic Map9q31NCBI
Fam117b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545712,107,141 - 12,180,614 (-)NCBIChiLan1.0ChiLan1.0
FAM117B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13711,583,542 - 11,668,488 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3711,583,684 - 11,661,903 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3712,467,063 - 12,552,009 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03711,520,177 - 11,605,348 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3711,520,315 - 11,599,177 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,476,433 - 11,561,749 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,448,107 - 11,533,023 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,441,918 - 11,526,872 (+)NCBIUU_Cfam_GSD_1.0
Fam117b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303159,783,034 - 159,876,695 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367261,753,652 - 1,843,405 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367261,753,318 - 1,846,977 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM117B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15106,183,205 - 106,284,313 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115106,183,217 - 106,284,318 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215117,639,859 - 117,740,819 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM117B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11088,370,979 - 88,513,138 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040110,878,963 - 111,018,660 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam117b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476513,701,345 - 13,782,952 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476513,661,928 - 13,782,962 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008974205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000060596   ⟹   ENSPPAP00000037695
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B208,042,146 - 208,173,180 (+)Ensembl
RefSeq Acc Id: XM_008974205   ⟹   XP_008972453
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213105,265,851 - 105,400,190 (+)NCBI
NHGRI_mPanPan12B105,280,848 - 105,415,187 (+)NCBI
Mhudiblu_PPA_v02B89,896,400 - 90,030,724 (+)NCBI
PanPan1.12B208,043,335 - 208,177,158 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008972453 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037695.1
Reference Protein Sequences
RefSeq Acc Id: XP_008972453   ⟸   XM_008974205
- Sequence:
RefSeq Acc Id: ENSPPAP00000037695   ⟸   ENSPPAT00000060596


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041596 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060596.1 UniProtKB/TrEMBL
InterPro Glcci1/FAM117 UniProtKB/TrEMBL
NCBI Gene FAM117B ENTREZGENE
PANTHER PTHR14972 UniProtKB/TrEMBL
  PTHR14972:SF6 UniProtKB/TrEMBL
Pfam FAM117 UniProtKB/TrEMBL
UniProt A0A2R9C6Z0_PANPA UniProtKB/TrEMBL